data_8R64
#
_model_server_result.job_id            w1m_RY2ynTrLZhWHXvl8VQ 
_model_server_result.datetime_utc      '2024-11-20 07:15:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8r64 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":702}' 
#
_entry.id    8R64 
#
_exptl.entry_id    8R64 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8R64 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8R64 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             Q 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 181 B THR 448 1_555 H MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc2 H MG MG . B MG 701 1_555 I O1G ATP . B ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc3 H MG MG . B MG 701 1_555 I O2B ATP . B ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc4 B OG1 THR 181 C THR 448 1_555 J MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc5 J MG MG . C MG 701 1_555 K O2B ATP . C ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
metalc ? metalc6 J MG MG . C MG 701 1_555 K O1G ATP . C ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc7 C OG1 THR 181 D THR 448 1_555 L MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc8 L MG MG . D MG 701 1_555 M O2B ATP . D ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
metalc ? metalc9 L MG MG . D MG 701 1_555 M O2G ATP . D ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc10 D OG1 THR 181 E THR 448 1_555 N MG MG . E MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
metalc ? metalc11 N MG MG . E MG 701 1_555 O O1G ATP . E ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc12 N MG MG . E MG 701 1_555 O O2B ATP . E ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc13 N MG MG . E MG 701 1_555 E OD2 ASP 262 F ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? 
metalc ? metalc14 P MG MG . F MG 701 1_555 Q O1A ADP . F ADP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? 
metalc ? metalc15 F OG1 THR 181 A THR 448 1_555 R MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc16 R MG MG . A MG 701 1_555 S O3G ATP . A ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? 
metalc ? metalc17 R MG MG . A MG 701 1_555 S O2B ATP . A ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8R64 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 MG B 1 701 702 MG MG . 
I 4 ATP B 1 702 801 ATP ATP . 
J 3 MG C 1 701 702 MG MG . 
K 4 ATP C 1 702 801 ATP ATP . 
L 3 MG D 1 701 702 MG MG . 
M 4 ATP D 1 702 801 ATP ATP . 
N 3 MG E 1 701 702 MG MG . 
O 4 ATP E 1 702 801 ATP ATP . 
P 3 MG F 1 701 702 MG MG . 
Q 5 ADP F 1 702 801 ADP ADP . 
R 3 MG A 1 701 702 MG MG . 
S 4 ATP A 1 702 801 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . Q 5 138.28 119.959 113.473 1 109.44 ? PB ADP 702 F 1 
HETATM 2 O O1B ADP . . . Q 5 137.851 118.926 112.459 1 102.03 ? O1B ADP 702 F 1 
HETATM 3 O O2B ADP . . . Q 5 137.54 119.885 114.786 1 107.11 ? O2B ADP 702 F 1 
HETATM 4 O O3B ADP . . . Q 5 138.431 121.354 112.919 1 106.98 ? O3B ADP 702 F 1 
HETATM 5 P PA ADP . . . Q 5 140.036 118.145 114.644 1 118.77 ? PA ADP 702 F 1 
HETATM 6 O O1A ADP . . . Q 5 139.3 117.057 113.901 1 114.85 ? O1A ADP 702 F 1 
HETATM 7 O O2A ADP . . . Q 5 139.775 118.382 116.112 1 102.67 ? O2A ADP 702 F 1 
HETATM 8 O O3A ADP . . . Q 5 139.78 119.528 113.862 1 112.02 ? O3A ADP 702 F 1 
HETATM 9 O O5' ADP . . . Q 5 141.616 117.907 114.448 1 112.09 ? O5' ADP 702 F 1 
HETATM 10 C C5' ADP . . . Q 5 142.137 116.582 114.357 1 110.42 ? C5' ADP 702 F 1 
HETATM 11 C C4' ADP . . . Q 5 143.589 116.57 114.818 1 110.19 ? C4' ADP 702 F 1 
HETATM 12 O O4' ADP . . . Q 5 144.245 117.775 114.415 1 108.97 ? O4' ADP 702 F 1 
HETATM 13 C C3' ADP . . . Q 5 143.696 116.475 116.333 1 111.42 ? C3' ADP 702 F 1 
HETATM 14 O O3' ADP . . . Q 5 144.198 115.192 116.722 1 111.66 ? O3' ADP 702 F 1 
HETATM 15 C C2' ADP . . . Q 5 144.639 117.586 116.755 1 109.92 ? C2' ADP 702 F 1 
HETATM 16 O O2' ADP . . . Q 5 145.792 117.061 117.422 1 107.95 ? O2' ADP 702 F 1 
HETATM 17 C C1' ADP . . . Q 5 145.043 118.305 115.478 1 108.98 ? C1' ADP 702 F 1 
HETATM 18 N N9 ADP . . . Q 5 144.801 119.761 115.622 1 110.03 ? N9 ADP 702 F 1 
HETATM 19 C C8 ADP . . . Q 5 143.864 120.469 114.961 1 110.03 ? C8 ADP 702 F 1 
HETATM 20 N N7 ADP . . . Q 5 143.909 121.778 115.322 1 109.83 ? N7 ADP 702 F 1 
HETATM 21 C C5 ADP . . . Q 5 144.892 121.919 116.229 1 107.16 ? C5 ADP 702 F 1 
HETATM 22 C C6 ADP . . . Q 5 145.47 123.032 117.016 1 105.49 ? C6 ADP 702 F 1 
HETATM 23 N N6 ADP . . . Q 5 144.992 124.295 116.901 1 104.44 ? N6 ADP 702 F 1 
HETATM 24 N N1 ADP . . . Q 5 146.492 122.744 117.852 1 106.07 ? N1 ADP 702 F 1 
HETATM 25 C C2 ADP . . . Q 5 146.984 121.498 117.983 1 104.82 ? C2 ADP 702 F 1 
HETATM 26 N N3 ADP . . . Q 5 146.502 120.446 117.298 1 104.07 ? N3 ADP 702 F 1 
HETATM 27 C C4 ADP . . . Q 5 145.479 120.587 116.422 1 107.08 ? C4 ADP 702 F 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#