data_8R6A # _model_server_result.job_id FFG37TX4ijsshOjvZC2rhg _model_server_result.datetime_utc '2025-01-11 07:45:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r6a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 8R6A # _exptl.entry_id 8R6A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.982 _cell.angle_gamma 90 _cell.entry_id 8R6A _cell.length_a 68.08 _cell.length_b 34.059 _cell.length_c 84.578 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R6A _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 8R6A _atom_sites.fract_transf_matrix[1][1] 0.014689 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000005 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029361 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 201 201 ADP ADP . D 2 ADP B 1 201 201 ADP ADP . E 3 HOH A 1 301 46 HOH HOH . E 3 HOH A 2 302 129 HOH HOH . E 3 HOH A 3 303 7 HOH HOH . E 3 HOH A 4 304 38 HOH HOH . E 3 HOH A 5 305 86 HOH HOH . E 3 HOH A 6 306 97 HOH HOH . E 3 HOH A 7 307 65 HOH HOH . E 3 HOH A 8 308 128 HOH HOH . E 3 HOH A 9 309 45 HOH HOH . E 3 HOH A 10 310 81 HOH HOH . E 3 HOH A 11 311 25 HOH HOH . E 3 HOH A 12 312 92 HOH HOH . E 3 HOH A 13 313 11 HOH HOH . E 3 HOH A 14 314 58 HOH HOH . E 3 HOH A 15 315 51 HOH HOH . E 3 HOH A 16 316 1 HOH HOH . E 3 HOH A 17 317 6 HOH HOH . E 3 HOH A 18 318 62 HOH HOH . E 3 HOH A 19 319 108 HOH HOH . E 3 HOH A 20 320 26 HOH HOH . E 3 HOH A 21 321 79 HOH HOH . E 3 HOH A 22 322 94 HOH HOH . E 3 HOH A 23 323 100 HOH HOH . E 3 HOH A 24 324 93 HOH HOH . E 3 HOH A 25 325 125 HOH HOH . E 3 HOH A 26 326 116 HOH HOH . E 3 HOH A 27 327 41 HOH HOH . E 3 HOH A 28 328 43 HOH HOH . E 3 HOH A 29 329 50 HOH HOH . E 3 HOH A 30 330 23 HOH HOH . E 3 HOH A 31 331 96 HOH HOH . E 3 HOH A 32 332 18 HOH HOH . E 3 HOH A 33 333 39 HOH HOH . E 3 HOH A 34 334 49 HOH HOH . E 3 HOH A 35 335 126 HOH HOH . E 3 HOH A 36 336 12 HOH HOH . E 3 HOH A 37 337 68 HOH HOH . E 3 HOH A 38 338 36 HOH HOH . E 3 HOH A 39 339 82 HOH HOH . E 3 HOH A 40 340 78 HOH HOH . E 3 HOH A 41 341 123 HOH HOH . E 3 HOH A 42 342 17 HOH HOH . E 3 HOH A 43 343 71 HOH HOH . E 3 HOH A 44 344 28 HOH HOH . E 3 HOH A 45 345 106 HOH HOH . E 3 HOH A 46 346 15 HOH HOH . E 3 HOH A 47 347 119 HOH HOH . E 3 HOH A 48 348 34 HOH HOH . E 3 HOH A 49 349 53 HOH HOH . E 3 HOH A 50 350 117 HOH HOH . E 3 HOH A 51 351 90 HOH HOH . E 3 HOH A 52 352 42 HOH HOH . E 3 HOH A 53 353 105 HOH HOH . E 3 HOH A 54 354 135 HOH HOH . E 3 HOH A 55 355 124 HOH HOH . E 3 HOH A 56 356 29 HOH HOH . E 3 HOH A 57 357 115 HOH HOH . E 3 HOH A 58 358 134 HOH HOH . E 3 HOH A 59 359 112 HOH HOH . E 3 HOH A 60 360 118 HOH HOH . F 3 HOH B 1 301 59 HOH HOH . F 3 HOH B 2 302 2 HOH HOH . F 3 HOH B 3 303 16 HOH HOH . F 3 HOH B 4 304 120 HOH HOH . F 3 HOH B 5 305 27 HOH HOH . F 3 HOH B 6 306 55 HOH HOH . F 3 HOH B 7 307 133 HOH HOH . F 3 HOH B 8 308 66 HOH HOH . F 3 HOH B 9 309 122 HOH HOH . F 3 HOH B 10 310 80 HOH HOH . F 3 HOH B 11 311 24 HOH HOH . F 3 HOH B 12 312 8 HOH HOH . F 3 HOH B 13 313 9 HOH HOH . F 3 HOH B 14 314 127 HOH HOH . F 3 HOH B 15 315 35 HOH HOH . F 3 HOH B 16 316 13 HOH HOH . F 3 HOH B 17 317 21 HOH HOH . F 3 HOH B 18 318 95 HOH HOH . F 3 HOH B 19 319 19 HOH HOH . F 3 HOH B 20 320 85 HOH HOH . F 3 HOH B 21 321 52 HOH HOH . F 3 HOH B 22 322 48 HOH HOH . F 3 HOH B 23 323 30 HOH HOH . F 3 HOH B 24 324 33 HOH HOH . F 3 HOH B 25 325 5 HOH HOH . F 3 HOH B 26 326 3 HOH HOH . F 3 HOH B 27 327 87 HOH HOH . F 3 HOH B 28 328 57 HOH HOH . F 3 HOH B 29 329 132 HOH HOH . F 3 HOH B 30 330 101 HOH HOH . F 3 HOH B 31 331 4 HOH HOH . F 3 HOH B 32 332 72 HOH HOH . F 3 HOH B 33 333 10 HOH HOH . F 3 HOH B 34 334 54 HOH HOH . F 3 HOH B 35 335 67 HOH HOH . F 3 HOH B 36 336 22 HOH HOH . F 3 HOH B 37 337 40 HOH HOH . F 3 HOH B 38 338 64 HOH HOH . F 3 HOH B 39 339 61 HOH HOH . F 3 HOH B 40 340 70 HOH HOH . F 3 HOH B 41 341 121 HOH HOH . F 3 HOH B 42 342 130 HOH HOH . F 3 HOH B 43 343 98 HOH HOH . F 3 HOH B 44 344 76 HOH HOH . F 3 HOH B 45 345 113 HOH HOH . F 3 HOH B 46 346 69 HOH HOH . F 3 HOH B 47 347 20 HOH HOH . F 3 HOH B 48 348 47 HOH HOH . F 3 HOH B 49 349 89 HOH HOH . F 3 HOH B 50 350 91 HOH HOH . F 3 HOH B 51 351 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . D 2 20.032 -2.034 62.192 1 56.14 ? PB ADP 201 B 1 HETATM 2 O O1B ADP . . . D 2 20.636 -2.602 60.93 1 63.83 ? O1B ADP 201 B 1 HETATM 3 O O2B ADP . . . D 2 18.529 -1.881 62.155 1 66.62 ? O2B ADP 201 B 1 HETATM 4 O O3B ADP . . . D 2 20.566 -2.655 63.461 1 54.04 ? O3B ADP 201 B 1 HETATM 5 P PA ADP . . . D 2 20.723 0.404 60.959 1 58.41 ? PA ADP 201 B 1 HETATM 6 O O1A ADP . . . D 2 20.954 1.836 61.385 1 56.07 ? O1A ADP 201 B 1 HETATM 7 O O2A ADP . . . D 2 21.637 -0.256 59.954 1 57.95 ? O2A ADP 201 B 1 HETATM 8 O O3A ADP . . . D 2 20.552 -0.511 62.275 1 78.65 ? O3A ADP 201 B 1 HETATM 9 O O5' ADP . . . D 2 19.253 0.283 60.325 1 59.22 ? O5' ADP 201 B 1 HETATM 10 C C5' ADP . . . D 2 18.273 1.282 60.558 1 62.77 ? C5' ADP 201 B 1 HETATM 11 C C4' ADP . . . D 2 17.921 1.913 59.224 1 60.35 ? C4' ADP 201 B 1 HETATM 12 O O4' ADP . . . D 2 18.906 2.891 58.906 1 59.74 ? O4' ADP 201 B 1 HETATM 13 C C3' ADP . . . D 2 17.913 0.903 58.086 1 64.38 ? C3' ADP 201 B 1 HETATM 14 O O3' ADP . . . D 2 16.57 0.735 57.628 1 89.32 ? O3' ADP 201 B 1 HETATM 15 C C2' ADP . . . D 2 18.785 1.487 56.989 1 59.69 ? C2' ADP 201 B 1 HETATM 16 O O2' ADP . . . D 2 18.056 1.56 55.761 1 69.47 ? O2' ADP 201 B 1 HETATM 17 C C1' ADP . . . D 2 19.137 2.875 57.501 1 53.8 ? C1' ADP 201 B 1 HETATM 18 N N9 ADP . . . D 2 20.538 3.251 57.191 1 53.69 ? N9 ADP 201 B 1 HETATM 19 C C8 ADP . . . D 2 21.655 2.579 57.53 1 47.57 ? C8 ADP 201 B 1 HETATM 20 N N7 ADP . . . D 2 22.764 3.202 57.045 1 43.31 ? N7 ADP 201 B 1 HETATM 21 C C5 ADP . . . D 2 22.351 4.288 56.362 1 43.94 ? C5 ADP 201 B 1 HETATM 22 C C6 ADP . . . D 2 22.976 5.395 55.595 1 41.63 ? C6 ADP 201 B 1 HETATM 23 N N6 ADP . . . D 2 24.317 5.492 55.438 1 40.57 ? N6 ADP 201 B 1 HETATM 24 N N1 ADP . . . D 2 22.161 6.32 55.044 1 44.39 ? N1 ADP 201 B 1 HETATM 25 C C2 ADP . . . D 2 20.825 6.261 55.176 1 50.4 ? C2 ADP 201 B 1 HETATM 26 N N3 ADP . . . D 2 20.191 5.292 55.853 1 54.39 ? N3 ADP 201 B 1 HETATM 27 C C4 ADP . . . D 2 20.884 4.293 56.443 1 52.53 ? C4 ADP 201 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #