data_8R6B # _model_server_result.job_id RipMZ2hWoQZ0MUiWaWO7UQ _model_server_result.datetime_utc '2025-01-11 07:08:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r6b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8R6B # _exptl.entry_id 8R6B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8R6B _cell.length_a 33.856 _cell.length_b 67.372 _cell.length_c 70.291 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R6B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 8R6B _atom_sites.fract_transf_matrix[1][1] 0.029537 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 201 201 ADP ADP . C 3 HOH A 1 301 3 HOH HOH . C 3 HOH A 2 302 1 HOH HOH . C 3 HOH A 3 303 2 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -1.553 2.221 29.64 1 56.17 ? PB ADP 201 A 1 HETATM 2 O O1B ADP . . . B 2 -3.046 2.401 29.492 1 42.94 ? O1B ADP 201 A 1 HETATM 3 O O2B ADP . . . B 2 -1.122 0.915 30.274 1 39.94 ? O2B ADP 201 A 1 HETATM 4 O O3B ADP . . . B 2 -0.818 3.452 30.12 1 36.28 ? O3B ADP 201 A 1 HETATM 5 P PA ADP . . . B 2 -0.734 3.189 27.053 1 44.24 ? PA ADP 201 A 1 HETATM 6 O O1A ADP . . . B 2 -1.403 4.473 27.478 1 39.48 ? O1A ADP 201 A 1 HETATM 7 O O2A ADP . . . B 2 0.76 3.138 26.812 1 32.95 ? O2A ADP 201 A 1 HETATM 8 O O3A ADP . . . B 2 -1.058 2.019 28.117 1 52.15 ? O3A ADP 201 A 1 HETATM 9 O O5' ADP . . . B 2 -1.541 2.615 25.779 1 35.8 ? O5' ADP 201 A 1 HETATM 10 C C5' ADP . . . B 2 -1.26 1.29 25.346 1 32.97 ? C5' ADP 201 A 1 HETATM 11 C C4' ADP . . . B 2 -1.793 1.121 23.927 1 34.57 ? C4' ADP 201 A 1 HETATM 12 O O4' ADP . . . B 2 -2.004 2.394 23.294 1 23.77 ? O4' ADP 201 A 1 HETATM 13 C C3' ADP . . . B 2 -0.779 0.367 23.084 1 32.51 ? C3' ADP 201 A 1 HETATM 14 O O3' ADP . . . B 2 -1.448 -0.566 22.229 1 40.22 ? O3' ADP 201 A 1 HETATM 15 C C2' ADP . . . B 2 -0.118 1.428 22.236 1 32.49 ? C2' ADP 201 A 1 HETATM 16 O O2' ADP . . . B 2 0.183 0.873 20.953 1 34.39 ? O2' ADP 201 A 1 HETATM 17 C C1' ADP . . . B 2 -1.158 2.535 22.153 1 27.06 ? C1' ADP 201 A 1 HETATM 18 N N9 ADP . . . B 2 -0.523 3.883 22.096 1 27.25 ? N9 ADP 201 A 1 HETATM 19 C C8 ADP . . . B 2 0.229 4.418 23.059 1 27.78 ? C8 ADP 201 A 1 HETATM 20 N N7 ADP . . . B 2 0.678 5.639 22.708 1 23.64 ? N7 ADP 201 A 1 HETATM 21 C C5 ADP . . . B 2 0.201 5.889 21.49 1 22.05 ? C5 ADP 201 A 1 HETATM 22 C C6 ADP . . . B 2 0.272 6.991 20.502 1 25.86 ? C6 ADP 201 A 1 HETATM 23 N N6 ADP . . . B 2 0.96 8.13 20.714 1 20.26 ? N6 ADP 201 A 1 HETATM 24 N N1 ADP . . . B 2 -0.371 6.871 19.335 1 30.36 ? N1 ADP 201 A 1 HETATM 25 C C2 ADP . . . B 2 -1.073 5.759 19.068 1 24.46 ? C2 ADP 201 A 1 HETATM 26 N N3 ADP . . . B 2 -1.194 4.714 19.892 1 26.51 ? N3 ADP 201 A 1 HETATM 27 C C4 ADP . . . B 2 -0.592 4.726 21.088 1 25.23 ? C4 ADP 201 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #