data_8R6E # _model_server_result.job_id 4sW4LP2OE7HkP7o2BSlMug _model_server_result.datetime_utc '2024-12-12 14:40:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r6e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":206}' # _entry.id 8R6E # _exptl.entry_id 8R6E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8R6E _cell.length_a 43.62 _cell.length_b 47.372 _cell.length_c 134.625 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R6E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 44 A GLU 44 1_555 G NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc2 A OE1 GLN 48 A GLN 48 1_555 G NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc3 A OD1 ASN 99 A ASN 99 1_555 H NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc4 A OD2 ASP 102 A ASP 102 1_555 H NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc5 B O THR 36 B THR 36 1_555 M NA NA . B NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc6 B OG1 THR 36 B THR 36 1_555 M NA NA . B NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc7 B O THR 116 B THR 116 1_555 M NA NA . B NA 205 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 3.074 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8R6E _atom_sites.fract_transf_matrix[1][1] 0.022925 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG A 1 201 201 PEG PEG . D 2 PEG A 1 202 202 PEG PEG . E 3 EDO A 1 203 203 EDO EDO . F 4 GOL A 1 204 149 GOL GOL . G 5 NA A 1 205 3 NA NA . H 5 NA A 1 206 4 NA NA . I 3 EDO B 1 201 201 EDO EDO . J 3 EDO B 1 202 204 EDO EDO . K 3 EDO B 1 203 205 EDO EDO . L 3 EDO B 1 204 206 EDO EDO . M 5 NA B 1 205 1 NA NA . N 6 HOH A 1 301 3 HOH HOH . N 6 HOH A 2 302 4 HOH HOH . N 6 HOH A 3 303 109 HOH HOH . N 6 HOH A 4 304 110 HOH HOH . N 6 HOH A 5 305 142 HOH HOH . N 6 HOH A 6 306 71 HOH HOH . N 6 HOH A 7 307 92 HOH HOH . N 6 HOH A 8 308 63 HOH HOH . N 6 HOH A 9 309 10 HOH HOH . N 6 HOH A 10 310 37 HOH HOH . N 6 HOH A 11 311 108 HOH HOH . N 6 HOH A 12 312 99 HOH HOH . N 6 HOH A 13 313 16 HOH HOH . N 6 HOH A 14 314 107 HOH HOH . N 6 HOH A 15 315 84 HOH HOH . N 6 HOH A 16 316 146 HOH HOH . N 6 HOH A 17 317 101 HOH HOH . N 6 HOH A 18 318 64 HOH HOH . N 6 HOH A 19 319 38 HOH HOH . N 6 HOH A 20 320 61 HOH HOH . N 6 HOH A 21 321 90 HOH HOH . N 6 HOH A 22 322 34 HOH HOH . N 6 HOH A 23 323 81 HOH HOH . N 6 HOH A 24 324 77 HOH HOH . N 6 HOH A 25 325 29 HOH HOH . N 6 HOH A 26 326 148 HOH HOH . N 6 HOH A 27 327 59 HOH HOH . N 6 HOH A 28 328 116 HOH HOH . N 6 HOH A 29 329 19 HOH HOH . N 6 HOH A 30 330 56 HOH HOH . N 6 HOH A 31 331 31 HOH HOH . N 6 HOH A 32 332 32 HOH HOH . N 6 HOH A 33 333 70 HOH HOH . N 6 HOH A 34 334 117 HOH HOH . N 6 HOH A 35 335 121 HOH HOH . N 6 HOH A 36 336 11 HOH HOH . N 6 HOH A 37 337 35 HOH HOH . N 6 HOH A 38 338 9 HOH HOH . N 6 HOH A 39 339 20 HOH HOH . N 6 HOH A 40 340 104 HOH HOH . N 6 HOH A 41 341 22 HOH HOH . N 6 HOH A 42 342 97 HOH HOH . N 6 HOH A 43 343 96 HOH HOH . N 6 HOH A 44 344 143 HOH HOH . N 6 HOH A 45 345 67 HOH HOH . N 6 HOH A 46 346 28 HOH HOH . N 6 HOH A 47 347 60 HOH HOH . N 6 HOH A 48 348 43 HOH HOH . N 6 HOH A 49 349 12 HOH HOH . N 6 HOH A 50 350 18 HOH HOH . N 6 HOH A 51 351 54 HOH HOH . N 6 HOH A 52 352 5 HOH HOH . N 6 HOH A 53 353 21 HOH HOH . N 6 HOH A 54 354 49 HOH HOH . N 6 HOH A 55 355 5 HOH HOH . N 6 HOH A 56 356 18 HOH HOH . N 6 HOH A 57 357 39 HOH HOH . N 6 HOH A 58 358 48 HOH HOH . N 6 HOH A 59 359 15 HOH HOH . N 6 HOH A 60 360 118 HOH HOH . N 6 HOH A 61 361 1 HOH HOH . N 6 HOH A 62 362 6 HOH HOH . N 6 HOH A 63 363 95 HOH HOH . N 6 HOH A 64 364 40 HOH HOH . N 6 HOH A 65 365 33 HOH HOH . N 6 HOH A 66 366 25 HOH HOH . N 6 HOH A 67 367 51 HOH HOH . N 6 HOH A 68 368 76 HOH HOH . N 6 HOH A 69 369 105 HOH HOH . N 6 HOH A 70 370 102 HOH HOH . N 6 HOH A 71 371 30 HOH HOH . N 6 HOH A 72 372 91 HOH HOH . N 6 HOH A 73 373 8 HOH HOH . N 6 HOH A 74 374 111 HOH HOH . N 6 HOH A 75 375 58 HOH HOH . N 6 HOH A 76 376 68 HOH HOH . N 6 HOH A 77 377 6 HOH HOH . N 6 HOH A 78 378 75 HOH HOH . N 6 HOH A 79 379 106 HOH HOH . N 6 HOH A 80 380 98 HOH HOH . N 6 HOH A 81 381 115 HOH HOH . N 6 HOH A 82 382 66 HOH HOH . N 6 HOH A 83 383 2 HOH HOH . N 6 HOH A 84 384 123 HOH HOH . N 6 HOH A 85 385 100 HOH HOH . N 6 HOH A 86 386 145 HOH HOH . N 6 HOH A 87 387 87 HOH HOH . N 6 HOH A 88 388 83 HOH HOH . N 6 HOH A 89 389 85 HOH HOH . N 6 HOH A 90 390 1 HOH HOH . N 6 HOH A 91 391 8 HOH HOH . N 6 HOH A 92 392 144 HOH HOH . N 6 HOH A 93 393 147 HOH HOH . N 6 HOH A 94 394 82 HOH HOH . O 6 HOH B 1 301 136 HOH HOH . O 6 HOH B 2 302 137 HOH HOH . O 6 HOH B 3 303 42 HOH HOH . O 6 HOH B 4 304 10 HOH HOH . O 6 HOH B 5 305 103 HOH HOH . O 6 HOH B 6 306 14 HOH HOH . O 6 HOH B 7 307 125 HOH HOH . O 6 HOH B 8 308 7 HOH HOH . O 6 HOH B 9 309 139 HOH HOH . O 6 HOH B 10 310 126 HOH HOH . O 6 HOH B 11 311 3 HOH HOH . O 6 HOH B 12 312 112 HOH HOH . O 6 HOH B 13 313 79 HOH HOH . O 6 HOH B 14 314 93 HOH HOH . O 6 HOH B 15 315 134 HOH HOH . O 6 HOH B 16 316 78 HOH HOH . O 6 HOH B 17 317 120 HOH HOH . O 6 HOH B 18 318 13 HOH HOH . O 6 HOH B 19 319 141 HOH HOH . O 6 HOH B 20 320 55 HOH HOH . O 6 HOH B 21 321 14 HOH HOH . O 6 HOH B 22 322 69 HOH HOH . O 6 HOH B 23 323 9 HOH HOH . O 6 HOH B 24 324 135 HOH HOH . O 6 HOH B 25 325 22 HOH HOH . O 6 HOH B 26 326 41 HOH HOH . O 6 HOH B 27 327 7 HOH HOH . O 6 HOH B 28 328 128 HOH HOH . O 6 HOH B 29 329 47 HOH HOH . O 6 HOH B 30 330 86 HOH HOH . O 6 HOH B 31 331 65 HOH HOH . O 6 HOH B 32 332 4 HOH HOH . O 6 HOH B 33 333 50 HOH HOH . O 6 HOH B 34 334 15 HOH HOH . O 6 HOH B 35 335 17 HOH HOH . O 6 HOH B 36 336 12 HOH HOH . O 6 HOH B 37 337 80 HOH HOH . O 6 HOH B 38 338 26 HOH HOH . O 6 HOH B 39 339 124 HOH HOH . O 6 HOH B 40 340 94 HOH HOH . O 6 HOH B 41 341 140 HOH HOH . O 6 HOH B 42 342 138 HOH HOH . O 6 HOH B 43 343 36 HOH HOH . O 6 HOH B 44 344 131 HOH HOH . O 6 HOH B 45 345 24 HOH HOH . O 6 HOH B 46 346 23 HOH HOH . O 6 HOH B 47 347 13 HOH HOH . O 6 HOH B 48 348 113 HOH HOH . O 6 HOH B 49 349 62 HOH HOH . O 6 HOH B 50 350 122 HOH HOH . O 6 HOH B 51 351 44 HOH HOH . O 6 HOH B 52 352 57 HOH HOH . O 6 HOH B 53 353 27 HOH HOH . O 6 HOH B 54 354 45 HOH HOH . O 6 HOH B 55 355 17 HOH HOH . O 6 HOH B 56 356 46 HOH HOH . O 6 HOH B 57 357 52 HOH HOH . O 6 HOH B 58 358 16 HOH HOH . O 6 HOH B 59 359 53 HOH HOH . O 6 HOH B 60 360 20 HOH HOH . O 6 HOH B 61 361 74 HOH HOH . O 6 HOH B 62 362 19 HOH HOH . O 6 HOH B 63 363 130 HOH HOH . O 6 HOH B 64 364 89 HOH HOH . O 6 HOH B 65 365 73 HOH HOH . O 6 HOH B 66 366 114 HOH HOH . O 6 HOH B 67 367 11 HOH HOH . O 6 HOH B 68 368 88 HOH HOH . O 6 HOH B 69 369 129 HOH HOH . O 6 HOH B 70 370 127 HOH HOH . O 6 HOH B 71 371 119 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 5 _atom_site.Cartn_x 12.711 _atom_site.Cartn_y 14.814 _atom_site.Cartn_z 27.176 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 206 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #