data_8R6L
#
_model_server_result.job_id            e_wHkkfaogoImTCJ17_uDQ 
_model_server_result.datetime_utc      '2024-11-17 12:18:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8r6l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":505}' 
#
_entry.id    8R6L 
#
_exptl.entry_id    8R6L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.52 
_cell.angle_gamma         90 
_cell.entry_id            8R6L 
_cell.length_a            80.291 
_cell.length_b            67.686 
_cell.length_c            96.618 
_cell.Z_PDB               14 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8R6L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
? monomeric 1 author_defined_assembly 7 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,H,I,J,K,L,M,N,O,P,KA 1 1 
B,Q,R,S,T,U,V,W,LA 2 1 
C,X,Y,Z,AA,MA 3 1 
D,BA,CA,DA,NA 4 1 
E,EA,FA,GA,HA,IA,OA 5 1 
F,JA 6 1 
G,PA 7 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 L N N 
? 3 M N N 
? 3 O N N 
? 3 P N N 
? 3 R N N 
? 3 U N N 
? 3 V N N 
? 3 Y N N 
? 3 Z N N 
? 3 DA N N 
? 3 FA N N 
? 3 GA N N 
? 3 HA N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 135 n n 
C1 C2 GOL sing 136 n n 
C1 H11 GOL sing 137 n n 
C1 H12 GOL sing 138 n n 
O1 HO1 GOL sing 139 n n 
C2 O2 GOL sing 140 n n 
C2 C3 GOL sing 141 n n 
C2 H2 GOL sing 142 n n 
O2 HO2 GOL sing 143 n n 
C3 O3 GOL sing 144 n n 
C3 H31 GOL sing 145 n n 
C3 H32 GOL sing 146 n n 
O3 HO3 GOL sing 147 n n 
#
_atom_sites.entry_id                     8R6L 
_atom_sites.fract_transf_matrix[1][1]    0.012455 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001204 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014774 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010398 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 MPD A 1 901 901 MPD MPD . 
I 2 MPD A 1 902 903 MPD MPD . 
J 3 GOL A 1 903 904 GOL GOL . 
K 4 ACT A 1 904 905 ACT ACT . 
L 3 GOL A 1 905 906 GOL GOL . 
M 3 GOL A 1 906 907 GOL GOL . 
N 4 ACT A 1 907 908 ACT ACT . 
O 3 GOL A 1 908 910 GOL GOL . 
P 3 GOL A 1 909 910 GOL GOL . 
Q 2 MPD B 1 501 909 MPD MPD . 
R 3 GOL B 1 502 901 GOL GOL . 
S 2 MPD B 1 503 902 MPD MPD . 
T 4 ACT B 1 504 903 ACT ACT . 
U 3 GOL B 1 505 906 GOL GOL . 
V 3 GOL B 1 506 907 GOL GOL . 
W 4 ACT B 1 507 908 ACT ACT . 
X 2 MPD C 1 901 901 MPD MPD . 
Y 3 GOL C 1 902 904 GOL GOL . 
Z 3 GOL C 1 903 906 GOL GOL . 
AA 4 ACT C 1 904 908 ACT ACT . 
BA 2 MPD D 1 901 901 MPD MPD . 
CA 2 MPD D 1 902 903 MPD MPD . 
DA 3 GOL D 1 903 906 GOL GOL . 
EA 2 MPD E 1 901 901 MPD MPD . 
FA 3 GOL E 1 902 904 GOL GOL . 
GA 3 GOL E 1 903 906 GOL GOL . 
HA 3 GOL E 1 904 907 GOL GOL . 
IA 4 ACT E 1 905 908 ACT ACT . 
JA 4 ACT F 1 501 906 ACT ACT . 
KA 5 HOH A 1 1001 43 HOH HOH . 
KA 5 HOH A 2 1002 34 HOH HOH . 
KA 5 HOH A 3 1003 4 HOH HOH . 
KA 5 HOH A 4 1004 16 HOH HOH . 
KA 5 HOH A 5 1005 1 HOH HOH . 
KA 5 HOH A 6 1006 54 HOH HOH . 
KA 5 HOH A 7 1007 30 HOH HOH . 
KA 5 HOH A 8 1008 8 HOH HOH . 
KA 5 HOH A 9 1009 27 HOH HOH . 
KA 5 HOH A 10 1010 39 HOH HOH . 
KA 5 HOH A 11 1011 31 HOH HOH . 
KA 5 HOH A 12 1012 24 HOH HOH . 
KA 5 HOH A 13 1013 15 HOH HOH . 
KA 5 HOH A 14 1014 48 HOH HOH . 
KA 5 HOH A 15 1015 41 HOH HOH . 
KA 5 HOH A 16 1016 23 HOH HOH . 
KA 5 HOH A 17 1017 22 HOH HOH . 
KA 5 HOH A 18 1018 3 HOH HOH . 
KA 5 HOH A 19 1019 10 HOH HOH . 
KA 5 HOH A 20 1020 38 HOH HOH . 
KA 5 HOH A 21 1021 56 HOH HOH . 
KA 5 HOH A 22 1022 18 HOH HOH . 
KA 5 HOH A 23 1023 11 HOH HOH . 
KA 5 HOH A 24 1024 2 HOH HOH . 
KA 5 HOH A 25 1025 28 HOH HOH . 
KA 5 HOH A 26 1026 49 HOH HOH . 
KA 5 HOH A 27 1027 25 HOH HOH . 
KA 5 HOH A 28 1028 6 HOH HOH . 
KA 5 HOH A 29 1029 20 HOH HOH . 
KA 5 HOH A 30 1030 5 HOH HOH . 
KA 5 HOH A 31 1031 0 HOH HOH . 
KA 5 HOH A 32 1032 9 HOH HOH . 
KA 5 HOH A 33 1033 42 HOH HOH . 
KA 5 HOH A 34 1034 62 HOH HOH . 
KA 5 HOH A 35 1035 21 HOH HOH . 
KA 5 HOH A 36 1036 50 HOH HOH . 
KA 5 HOH A 37 1037 7 HOH HOH . 
KA 5 HOH A 38 1038 37 HOH HOH . 
KA 5 HOH A 39 1039 26 HOH HOH . 
KA 5 HOH A 40 1040 59 HOH HOH . 
KA 5 HOH A 41 1041 14 HOH HOH . 
KA 5 HOH A 42 1042 17 HOH HOH . 
KA 5 HOH A 43 1043 -1 HOH HOH . 
KA 5 HOH A 44 1044 13 HOH HOH . 
KA 5 HOH A 45 1045 35 HOH HOH . 
KA 5 HOH A 46 1046 32 HOH HOH . 
KA 5 HOH A 47 1047 33 HOH HOH . 
KA 5 HOH A 48 1048 60 HOH HOH . 
KA 5 HOH A 49 1049 51 HOH HOH . 
KA 5 HOH A 50 1050 47 HOH HOH . 
KA 5 HOH A 51 1051 53 HOH HOH . 
KA 5 HOH A 52 1052 29 HOH HOH . 
KA 5 HOH A 53 1053 61 HOH HOH . 
KA 5 HOH A 54 1054 12 HOH HOH . 
KA 5 HOH A 55 1055 44 HOH HOH . 
KA 5 HOH A 56 1056 46 HOH HOH . 
KA 5 HOH A 57 1057 52 HOH HOH . 
KA 5 HOH A 58 1058 55 HOH HOH . 
KA 5 HOH A 59 1059 36 HOH HOH . 
KA 5 HOH A 60 1060 40 HOH HOH . 
KA 5 HOH A 61 1061 19 HOH HOH . 
KA 5 HOH A 62 1062 57 HOH HOH . 
KA 5 HOH A 63 1063 35 HOH HOH . 
LA 5 HOH B 1 601 27 HOH HOH . 
LA 5 HOH B 2 602 1 HOH HOH . 
LA 5 HOH B 3 603 19 HOH HOH . 
LA 5 HOH B 4 604 15 HOH HOH . 
LA 5 HOH B 5 605 33 HOH HOH . 
LA 5 HOH B 6 606 29 HOH HOH . 
LA 5 HOH B 7 607 4 HOH HOH . 
LA 5 HOH B 8 608 20 HOH HOH . 
LA 5 HOH B 9 609 17 HOH HOH . 
LA 5 HOH B 10 610 7 HOH HOH . 
LA 5 HOH B 11 611 18 HOH HOH . 
LA 5 HOH B 12 612 21 HOH HOH . 
LA 5 HOH B 13 613 22 HOH HOH . 
LA 5 HOH B 14 614 5 HOH HOH . 
LA 5 HOH B 15 615 25 HOH HOH . 
LA 5 HOH B 16 616 6 HOH HOH . 
LA 5 HOH B 17 617 31 HOH HOH . 
LA 5 HOH B 18 618 28 HOH HOH . 
LA 5 HOH B 19 619 13 HOH HOH . 
LA 5 HOH B 20 620 3 HOH HOH . 
LA 5 HOH B 21 621 8 HOH HOH . 
LA 5 HOH B 22 622 9 HOH HOH . 
LA 5 HOH B 23 623 2 HOH HOH . 
LA 5 HOH B 24 624 0 HOH HOH . 
LA 5 HOH B 25 625 14 HOH HOH . 
LA 5 HOH B 26 626 34 HOH HOH . 
LA 5 HOH B 27 627 11 HOH HOH . 
LA 5 HOH B 28 628 12 HOH HOH . 
LA 5 HOH B 29 629 32 HOH HOH . 
LA 5 HOH B 30 630 30 HOH HOH . 
LA 5 HOH B 31 631 23 HOH HOH . 
LA 5 HOH B 32 632 16 HOH HOH . 
LA 5 HOH B 33 633 36 HOH HOH . 
LA 5 HOH B 34 634 24 HOH HOH . 
LA 5 HOH B 35 635 -1 HOH HOH . 
LA 5 HOH B 36 636 45 HOH HOH . 
LA 5 HOH B 37 637 10 HOH HOH . 
LA 5 HOH B 38 638 26 HOH HOH . 
MA 5 HOH C 1 1001 8 HOH HOH . 
MA 5 HOH C 2 1002 7 HOH HOH . 
MA 5 HOH C 3 1003 23 HOH HOH . 
MA 5 HOH C 4 1004 22 HOH HOH . 
MA 5 HOH C 5 1005 1 HOH HOH . 
MA 5 HOH C 6 1006 9 HOH HOH . 
MA 5 HOH C 7 1007 28 HOH HOH . 
MA 5 HOH C 8 1008 5 HOH HOH . 
MA 5 HOH C 9 1009 13 HOH HOH . 
MA 5 HOH C 10 1010 16 HOH HOH . 
MA 5 HOH C 11 1011 2 HOH HOH . 
MA 5 HOH C 12 1012 4 HOH HOH . 
MA 5 HOH C 13 1013 24 HOH HOH . 
MA 5 HOH C 14 1014 3 HOH HOH . 
MA 5 HOH C 15 1015 58 HOH HOH . 
MA 5 HOH C 16 1016 10 HOH HOH . 
MA 5 HOH C 17 1017 19 HOH HOH . 
MA 5 HOH C 18 1018 17 HOH HOH . 
MA 5 HOH C 19 1019 27 HOH HOH . 
MA 5 HOH C 20 1020 0 HOH HOH . 
MA 5 HOH C 21 1021 6 HOH HOH . 
MA 5 HOH C 22 1022 15 HOH HOH . 
MA 5 HOH C 23 1023 14 HOH HOH . 
MA 5 HOH C 24 1024 -1 HOH HOH . 
MA 5 HOH C 25 1025 18 HOH HOH . 
MA 5 HOH C 26 1026 25 HOH HOH . 
MA 5 HOH C 27 1027 20 HOH HOH . 
MA 5 HOH C 28 1028 12 HOH HOH . 
MA 5 HOH C 29 1029 26 HOH HOH . 
MA 5 HOH C 30 1030 11 HOH HOH . 
NA 5 HOH D 1 1001 7 HOH HOH . 
NA 5 HOH D 2 1002 1 HOH HOH . 
NA 5 HOH D 3 1003 8 HOH HOH . 
NA 5 HOH D 4 1004 12 HOH HOH . 
NA 5 HOH D 5 1005 20 HOH HOH . 
NA 5 HOH D 6 1006 0 HOH HOH . 
NA 5 HOH D 7 1007 6 HOH HOH . 
NA 5 HOH D 8 1008 21 HOH HOH . 
NA 5 HOH D 9 1009 2 HOH HOH . 
NA 5 HOH D 10 1010 18 HOH HOH . 
NA 5 HOH D 11 1011 9 HOH HOH . 
NA 5 HOH D 12 1012 6 HOH HOH . 
NA 5 HOH D 13 1013 4 HOH HOH . 
NA 5 HOH D 14 1014 13 HOH HOH . 
NA 5 HOH D 15 1015 5 HOH HOH . 
NA 5 HOH D 16 1016 16 HOH HOH . 
NA 5 HOH D 17 1017 15 HOH HOH . 
NA 5 HOH D 18 1018 3 HOH HOH . 
NA 5 HOH D 19 1019 10 HOH HOH . 
NA 5 HOH D 20 1020 17 HOH HOH . 
NA 5 HOH D 21 1021 21 HOH HOH . 
NA 5 HOH D 22 1022 -1 HOH HOH . 
NA 5 HOH D 23 1023 19 HOH HOH . 
NA 5 HOH D 24 1024 11 HOH HOH . 
NA 5 HOH D 25 1025 14 HOH HOH . 
OA 5 HOH E 1 1001 5 HOH HOH . 
OA 5 HOH E 2 1002 12 HOH HOH . 
OA 5 HOH E 3 1003 9 HOH HOH . 
OA 5 HOH E 4 1004 21 HOH HOH . 
OA 5 HOH E 5 1005 0 HOH HOH . 
OA 5 HOH E 6 1006 3 HOH HOH . 
OA 5 HOH E 7 1007 4 HOH HOH . 
OA 5 HOH E 8 1008 16 HOH HOH . 
OA 5 HOH E 9 1009 1 HOH HOH . 
OA 5 HOH E 10 1010 14 HOH HOH . 
OA 5 HOH E 11 1011 19 HOH HOH . 
OA 5 HOH E 12 1012 -1 HOH HOH . 
OA 5 HOH E 13 1013 2 HOH HOH . 
OA 5 HOH E 14 1014 20 HOH HOH . 
OA 5 HOH E 15 1015 8 HOH HOH . 
OA 5 HOH E 16 1016 10 HOH HOH . 
OA 5 HOH E 17 1017 13 HOH HOH . 
OA 5 HOH E 18 1018 18 HOH HOH . 
OA 5 HOH E 19 1019 7 HOH HOH . 
OA 5 HOH E 20 1020 17 HOH HOH . 
OA 5 HOH E 21 1021 15 HOH HOH . 
OA 5 HOH E 22 1022 11 HOH HOH . 
PA 5 HOH G 1 501 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . U 3 -34.561 0.037 49.384 1 76.56 ? C1 GOL 505 B 1 
HETATM 2 O O1 GOL . . . U 3 -35.198 1.079 48.715 1 74.57 ? O1 GOL 505 B 1 
HETATM 3 C C2 GOL . . . U 3 -35.621 -0.707 50.24 1 80.68 ? C2 GOL 505 B 1 
HETATM 4 O O2 GOL . . . U 3 -36.336 0.151 51.061 1 82.92 ? O2 GOL 505 B 1 
HETATM 5 C C3 GOL . . . U 3 -36.535 -1.448 49.216 1 83.51 ? C3 GOL 505 B 1 
HETATM 6 O O3 GOL . . . U 3 -35.696 -2.214 48.404 1 86.22 ? O3 GOL 505 B 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#