data_8R6M
#
_model_server_result.job_id            pAGLxGw6CbX6HWogNWTKhQ 
_model_server_result.datetime_utc      '2024-11-15 02:08:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8r6m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":502}' 
#
_entry.id    8R6M 
#
_exptl.entry_id    8R6M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    24 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8R6M 
_cell.length_a            70.588 
_cell.length_b            88.426 
_cell.length_c            257.785 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8R6M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,J,K,L,M,N,O,IA 1 1 
B,P,Q,R,S,T,U,V,W,JA 2 1 
C,X,Y,Z,AA,BA,CA,KA 3 1 
D,DA,EA,FA,GA,HA,LA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 DA N N 
? 2 EA N N 
? 2 FA N N 
? 2 GA N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 185 n n 
C1 C2 GOL sing 186 n n 
C1 H11 GOL sing 187 n n 
C1 H12 GOL sing 188 n n 
O1 HO1 GOL sing 189 n n 
C2 O2 GOL sing 190 n n 
C2 C3 GOL sing 191 n n 
C2 H2 GOL sing 192 n n 
O2 HO2 GOL sing 193 n n 
C3 O3 GOL sing 194 n n 
C3 H31 GOL sing 195 n n 
C3 H32 GOL sing 196 n n 
O3 HO3 GOL sing 197 n n 
#
_atom_sites.entry_id                     8R6M 
_atom_sites.fract_transf_matrix[1][1]    0.014167 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011309 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003879 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GOL A 1 501 501 GOL GOL . 
F 2 GOL A 1 502 502 GOL GOL . 
G 2 GOL A 1 503 503 GOL GOL . 
H 2 GOL A 1 504 504 GOL GOL . 
I 2 GOL A 1 505 505 GOL GOL . 
J 2 GOL A 1 506 506 GOL GOL . 
K 2 GOL A 1 507 507 GOL GOL . 
L 2 GOL A 1 508 508 GOL GOL . 
M 3 SO4 A 1 509 600 SO4 SO4 . 
N 3 SO4 A 1 510 601 SO4 SO4 . 
O 4 1GH A 1 511 900 1GH 1GH . 
P 2 GOL B 1 501 501 GOL GOL . 
Q 2 GOL B 1 502 502 GOL GOL . 
R 2 GOL B 1 503 503 GOL GOL . 
S 2 GOL B 1 504 504 GOL GOL . 
T 2 GOL B 1 505 505 GOL GOL . 
U 2 GOL B 1 506 506 GOL GOL . 
V 2 GOL B 1 507 507 GOL GOL . 
W 4 1GH B 1 508 900 1GH 1GH . 
X 2 GOL C 1 501 501 GOL GOL . 
Y 2 GOL C 1 502 502 GOL GOL . 
Z 2 GOL C 1 503 503 GOL GOL . 
AA 2 GOL C 1 504 504 GOL GOL . 
BA 2 GOL C 1 505 505 GOL GOL . 
CA 4 1GH C 1 506 900 1GH 1GH . 
DA 2 GOL D 1 501 501 GOL GOL . 
EA 2 GOL D 1 502 502 GOL GOL . 
FA 2 GOL D 1 503 503 GOL GOL . 
GA 2 GOL D 1 504 504 GOL GOL . 
HA 4 1GH D 1 505 900 1GH 1GH . 
IA 5 HOH A 1 601 9 HOH HOH . 
IA 5 HOH A 2 602 13 HOH HOH . 
IA 5 HOH A 3 603 72 HOH HOH . 
IA 5 HOH A 4 604 104 HOH HOH . 
IA 5 HOH A 5 605 2 HOH HOH . 
IA 5 HOH A 6 606 3 HOH HOH . 
IA 5 HOH A 7 607 119 HOH HOH . 
IA 5 HOH A 8 608 1 HOH HOH . 
IA 5 HOH A 9 609 1 HOH HOH . 
IA 5 HOH A 10 610 59 HOH HOH . 
IA 5 HOH A 11 611 123 HOH HOH . 
IA 5 HOH A 12 612 170 HOH HOH . 
IA 5 HOH A 13 613 69 HOH HOH . 
IA 5 HOH A 14 614 4 HOH HOH . 
IA 5 HOH A 15 615 31 HOH HOH . 
IA 5 HOH A 16 616 75 HOH HOH . 
IA 5 HOH A 17 617 6 HOH HOH . 
IA 5 HOH A 18 618 136 HOH HOH . 
IA 5 HOH A 19 619 7 HOH HOH . 
IA 5 HOH A 20 620 66 HOH HOH . 
IA 5 HOH A 21 621 157 HOH HOH . 
IA 5 HOH A 22 622 40 HOH HOH . 
IA 5 HOH A 23 623 0 HOH HOH . 
IA 5 HOH A 24 624 141 HOH HOH . 
IA 5 HOH A 25 625 11 HOH HOH . 
IA 5 HOH A 26 626 143 HOH HOH . 
IA 5 HOH A 27 627 12 HOH HOH . 
IA 5 HOH A 28 628 18 HOH HOH . 
IA 5 HOH A 29 629 149 HOH HOH . 
IA 5 HOH A 30 630 4 HOH HOH . 
IA 5 HOH A 31 631 150 HOH HOH . 
IA 5 HOH A 32 632 85 HOH HOH . 
IA 5 HOH A 33 633 23 HOH HOH . 
IA 5 HOH A 34 634 115 HOH HOH . 
IA 5 HOH A 35 635 103 HOH HOH . 
IA 5 HOH A 36 636 7 HOH HOH . 
IA 5 HOH A 37 637 25 HOH HOH . 
IA 5 HOH A 38 638 5 HOH HOH . 
IA 5 HOH A 39 639 -1 HOH HOH . 
IA 5 HOH A 40 640 80 HOH HOH . 
IA 5 HOH A 41 641 98 HOH HOH . 
IA 5 HOH A 42 642 21 HOH HOH . 
IA 5 HOH A 43 643 169 HOH HOH . 
IA 5 HOH A 44 644 14 HOH HOH . 
IA 5 HOH A 45 645 93 HOH HOH . 
IA 5 HOH A 46 646 110 HOH HOH . 
IA 5 HOH A 47 647 48 HOH HOH . 
IA 5 HOH A 48 648 79 HOH HOH . 
IA 5 HOH A 49 649 8 HOH HOH . 
IA 5 HOH A 50 650 5 HOH HOH . 
IA 5 HOH A 51 651 63 HOH HOH . 
IA 5 HOH A 52 652 154 HOH HOH . 
IA 5 HOH A 53 653 58 HOH HOH . 
IA 5 HOH A 54 654 34 HOH HOH . 
IA 5 HOH A 55 655 101 HOH HOH . 
IA 5 HOH A 56 656 46 HOH HOH . 
IA 5 HOH A 57 657 117 HOH HOH . 
IA 5 HOH A 58 658 39 HOH HOH . 
IA 5 HOH A 59 659 56 HOH HOH . 
IA 5 HOH A 60 660 118 HOH HOH . 
IA 5 HOH A 61 661 116 HOH HOH . 
IA 5 HOH A 62 662 120 HOH HOH . 
IA 5 HOH A 63 663 33 HOH HOH . 
IA 5 HOH A 64 664 182 HOH HOH . 
IA 5 HOH A 65 665 77 HOH HOH . 
IA 5 HOH A 66 666 187 HOH HOH . 
IA 5 HOH A 67 667 146 HOH HOH . 
IA 5 HOH A 68 668 55 HOH HOH . 
IA 5 HOH A 69 669 142 HOH HOH . 
IA 5 HOH A 70 670 41 HOH HOH . 
IA 5 HOH A 71 671 167 HOH HOH . 
IA 5 HOH A 72 672 100 HOH HOH . 
IA 5 HOH A 73 673 52 HOH HOH . 
IA 5 HOH A 74 674 81 HOH HOH . 
IA 5 HOH A 75 675 102 HOH HOH . 
IA 5 HOH A 76 676 89 HOH HOH . 
IA 5 HOH A 77 677 108 HOH HOH . 
IA 5 HOH A 78 678 165 HOH HOH . 
JA 5 HOH B 1 601 7 HOH HOH . 
JA 5 HOH B 2 602 74 HOH HOH . 
JA 5 HOH B 3 603 125 HOH HOH . 
JA 5 HOH B 4 604 3 HOH HOH . 
JA 5 HOH B 5 605 0 HOH HOH . 
JA 5 HOH B 6 606 179 HOH HOH . 
JA 5 HOH B 7 607 32 HOH HOH . 
JA 5 HOH B 8 608 124 HOH HOH . 
JA 5 HOH B 9 609 185 HOH HOH . 
JA 5 HOH B 10 610 107 HOH HOH . 
JA 5 HOH B 11 611 60 HOH HOH . 
JA 5 HOH B 12 612 8 HOH HOH . 
JA 5 HOH B 13 613 122 HOH HOH . 
JA 5 HOH B 14 614 20 HOH HOH . 
JA 5 HOH B 15 615 26 HOH HOH . 
JA 5 HOH B 16 616 43 HOH HOH . 
JA 5 HOH B 17 617 30 HOH HOH . 
JA 5 HOH B 18 618 5 HOH HOH . 
JA 5 HOH B 19 619 163 HOH HOH . 
JA 5 HOH B 20 620 91 HOH HOH . 
JA 5 HOH B 21 621 17 HOH HOH . 
JA 5 HOH B 22 622 1 HOH HOH . 
JA 5 HOH B 23 623 65 HOH HOH . 
JA 5 HOH B 24 624 4 HOH HOH . 
JA 5 HOH B 25 625 188 HOH HOH . 
JA 5 HOH B 26 626 2 HOH HOH . 
JA 5 HOH B 27 627 109 HOH HOH . 
JA 5 HOH B 28 628 70 HOH HOH . 
JA 5 HOH B 29 629 173 HOH HOH . 
JA 5 HOH B 30 630 10 HOH HOH . 
JA 5 HOH B 31 631 106 HOH HOH . 
JA 5 HOH B 32 632 156 HOH HOH . 
JA 5 HOH B 33 633 129 HOH HOH . 
JA 5 HOH B 34 634 180 HOH HOH . 
JA 5 HOH B 35 635 49 HOH HOH . 
JA 5 HOH B 36 636 145 HOH HOH . 
JA 5 HOH B 37 637 128 HOH HOH . 
JA 5 HOH B 38 638 24 HOH HOH . 
JA 5 HOH B 39 639 152 HOH HOH . 
JA 5 HOH B 40 640 96 HOH HOH . 
JA 5 HOH B 41 641 132 HOH HOH . 
JA 5 HOH B 42 642 90 HOH HOH . 
JA 5 HOH B 43 643 22 HOH HOH . 
JA 5 HOH B 44 644 3 HOH HOH . 
JA 5 HOH B 45 645 130 HOH HOH . 
JA 5 HOH B 46 646 78 HOH HOH . 
JA 5 HOH B 47 647 28 HOH HOH . 
JA 5 HOH B 48 648 16 HOH HOH . 
JA 5 HOH B 49 649 92 HOH HOH . 
JA 5 HOH B 50 650 6 HOH HOH . 
JA 5 HOH B 51 651 -1 HOH HOH . 
JA 5 HOH B 52 652 158 HOH HOH . 
JA 5 HOH B 53 653 53 HOH HOH . 
JA 5 HOH B 54 654 47 HOH HOH . 
JA 5 HOH B 55 655 184 HOH HOH . 
JA 5 HOH B 56 656 181 HOH HOH . 
JA 5 HOH B 57 657 174 HOH HOH . 
JA 5 HOH B 58 658 36 HOH HOH . 
JA 5 HOH B 59 659 160 HOH HOH . 
JA 5 HOH B 60 660 164 HOH HOH . 
JA 5 HOH B 61 661 83 HOH HOH . 
JA 5 HOH B 62 662 112 HOH HOH . 
JA 5 HOH B 63 663 178 HOH HOH . 
JA 5 HOH B 64 664 113 HOH HOH . 
KA 5 HOH C 1 601 153 HOH HOH . 
KA 5 HOH C 2 602 71 HOH HOH . 
KA 5 HOH C 3 603 5 HOH HOH . 
KA 5 HOH C 4 604 6 HOH HOH . 
KA 5 HOH C 5 605 2 HOH HOH . 
KA 5 HOH C 6 606 177 HOH HOH . 
KA 5 HOH C 7 607 27 HOH HOH . 
KA 5 HOH C 8 608 151 HOH HOH . 
KA 5 HOH C 9 609 138 HOH HOH . 
KA 5 HOH C 10 610 7 HOH HOH . 
KA 5 HOH C 11 611 99 HOH HOH . 
KA 5 HOH C 12 612 82 HOH HOH . 
KA 5 HOH C 13 613 4 HOH HOH . 
KA 5 HOH C 14 614 87 HOH HOH . 
KA 5 HOH C 15 615 168 HOH HOH . 
KA 5 HOH C 16 616 0 HOH HOH . 
KA 5 HOH C 17 617 1 HOH HOH . 
KA 5 HOH C 18 618 121 HOH HOH . 
KA 5 HOH C 19 619 161 HOH HOH . 
KA 5 HOH C 20 620 67 HOH HOH . 
KA 5 HOH C 21 621 54 HOH HOH . 
KA 5 HOH C 22 622 2 HOH HOH . 
KA 5 HOH C 23 623 6 HOH HOH . 
KA 5 HOH C 24 624 3 HOH HOH . 
KA 5 HOH C 25 625 76 HOH HOH . 
KA 5 HOH C 26 626 84 HOH HOH . 
KA 5 HOH C 27 627 62 HOH HOH . 
KA 5 HOH C 28 628 155 HOH HOH . 
KA 5 HOH C 29 629 19 HOH HOH . 
KA 5 HOH C 30 630 57 HOH HOH . 
KA 5 HOH C 31 631 64 HOH HOH . 
KA 5 HOH C 32 632 51 HOH HOH . 
KA 5 HOH C 33 633 86 HOH HOH . 
KA 5 HOH C 34 634 88 HOH HOH . 
KA 5 HOH C 35 635 37 HOH HOH . 
KA 5 HOH C 36 636 176 HOH HOH . 
KA 5 HOH C 37 637 137 HOH HOH . 
KA 5 HOH C 38 638 131 HOH HOH . 
KA 5 HOH C 39 639 172 HOH HOH . 
KA 5 HOH C 40 640 -1 HOH HOH . 
KA 5 HOH C 41 641 186 HOH HOH . 
KA 5 HOH C 42 642 140 HOH HOH . 
KA 5 HOH C 43 643 114 HOH HOH . 
KA 5 HOH C 44 644 139 HOH HOH . 
KA 5 HOH C 45 645 45 HOH HOH . 
KA 5 HOH C 46 646 127 HOH HOH . 
KA 5 HOH C 47 647 73 HOH HOH . 
KA 5 HOH C 48 648 50 HOH HOH . 
KA 5 HOH C 49 649 159 HOH HOH . 
LA 5 HOH D 1 601 15 HOH HOH . 
LA 5 HOH D 2 602 2 HOH HOH . 
LA 5 HOH D 3 603 175 HOH HOH . 
LA 5 HOH D 4 604 166 HOH HOH . 
LA 5 HOH D 5 605 95 HOH HOH . 
LA 5 HOH D 6 606 135 HOH HOH . 
LA 5 HOH D 7 607 6 HOH HOH . 
LA 5 HOH D 8 608 1 HOH HOH . 
LA 5 HOH D 9 609 38 HOH HOH . 
LA 5 HOH D 10 610 29 HOH HOH . 
LA 5 HOH D 11 611 3 HOH HOH . 
LA 5 HOH D 12 612 68 HOH HOH . 
LA 5 HOH D 13 613 5 HOH HOH . 
LA 5 HOH D 14 614 0 HOH HOH . 
LA 5 HOH D 15 615 147 HOH HOH . 
LA 5 HOH D 16 616 4 HOH HOH . 
LA 5 HOH D 17 617 97 HOH HOH . 
LA 5 HOH D 18 618 8 HOH HOH . 
LA 5 HOH D 19 619 44 HOH HOH . 
LA 5 HOH D 20 620 7 HOH HOH . 
LA 5 HOH D 21 621 105 HOH HOH . 
LA 5 HOH D 22 622 171 HOH HOH . 
LA 5 HOH D 23 623 94 HOH HOH . 
LA 5 HOH D 24 624 162 HOH HOH . 
LA 5 HOH D 25 625 42 HOH HOH . 
LA 5 HOH D 26 626 144 HOH HOH . 
LA 5 HOH D 27 627 -1 HOH HOH . 
LA 5 HOH D 28 628 134 HOH HOH . 
LA 5 HOH D 29 629 126 HOH HOH . 
LA 5 HOH D 30 630 35 HOH HOH . 
LA 5 HOH D 31 631 61 HOH HOH . 
LA 5 HOH D 32 632 183 HOH HOH . 
LA 5 HOH D 33 633 111 HOH HOH . 
LA 5 HOH D 34 634 133 HOH HOH . 
LA 5 HOH D 35 635 148 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 2 29.47 -4.47 65.035 1 25.72 ? C1 GOL 502 A 1 
HETATM 2 O O1 GOL . . . F 2 30.249 -3.425 65.517 1 21.31 ? O1 GOL 502 A 1 
HETATM 3 C C2 GOL . . . F 2 29.637 -4.496 63.501 1 30.24 ? C2 GOL 502 A 1 
HETATM 4 O O2 GOL . . . F 2 30.967 -4.48 63.134 1 33.77 ? O2 GOL 502 A 1 
HETATM 5 C C3 GOL . . . F 2 28.947 -5.797 63.034 1 28.76 ? C3 GOL 502 A 1 
HETATM 6 O O3 GOL . . . F 2 28.205 -6.306 64.099 1 24.33 ? O3 GOL 502 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#