data_8R7R # _model_server_result.job_id cmYHAottVK66744fpU0rnQ _model_server_result.datetime_utc '2024-12-27 04:19:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":401}' # _entry.id 8R7R # _exptl.entry_id 8R7R _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 324.417 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Quinidine _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8R7R _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 12-meric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 55 A CYS 55 1_555 A SG CYS 242 A CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 62 A CYS 62 1_555 A SG CYS 236 A CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 66 A CYS 66 1_555 A SG CYS 231 A CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 55 B CYS 55 1_555 B SG CYS 242 B CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 62 B CYS 62 1_555 B SG CYS 236 B CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 66 B CYS 66 1_555 B SG CYS 231 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 C SG CYS 55 C CYS 55 1_555 C SG CYS 242 C CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 C SG CYS 62 C CYS 62 1_555 C SG CYS 236 C CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 C SG CYS 66 C CYS 66 1_555 C SG CYS 231 C CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 D SG CYS 55 D CYS 55 1_555 D SG CYS 242 D CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 D SG CYS 62 D CYS 62 1_555 D SG CYS 236 D CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 D SG CYS 66 D CYS 66 1_555 D SG CYS 231 D CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 E SG CYS 55 E CYS 55 1_555 E SG CYS 242 E CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 E SG CYS 62 E CYS 62 1_555 E SG CYS 236 E CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 E SG CYS 66 E CYS 66 1_555 E SG CYS 231 E CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 F SG CYS 55 F CYS 55 1_555 F SG CYS 242 F CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 F SG CYS 62 F CYS 62 1_555 F SG CYS 236 F CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 F SG CYS 66 F CYS 66 1_555 F SG CYS 231 F CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf19 G SG CYS 55 G CYS 55 1_555 G SG CYS 242 G CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf20 G SG CYS 62 G CYS 62 1_555 G SG CYS 236 G CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf21 G SG CYS 66 G CYS 66 1_555 G SG CYS 231 G CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf22 H SG CYS 55 H CYS 55 1_555 H SG CYS 242 H CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf23 H SG CYS 62 H CYS 62 1_555 H SG CYS 236 H CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf24 H SG CYS 66 H CYS 66 1_555 H SG CYS 231 H CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf25 I SG CYS 55 I CYS 55 1_555 I SG CYS 242 I CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf26 I SG CYS 62 I CYS 62 1_555 I SG CYS 236 I CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf27 I SG CYS 66 I CYS 66 1_555 I SG CYS 231 I CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf28 J SG CYS 55 J CYS 55 1_555 J SG CYS 242 J CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf29 J SG CYS 62 J CYS 62 1_555 J SG CYS 236 J CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf30 J SG CYS 66 J CYS 66 1_555 J SG CYS 231 J CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf31 K SG CYS 55 K CYS 55 1_555 K SG CYS 242 K CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf32 K SG CYS 62 K CYS 62 1_555 K SG CYS 236 K CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf33 K SG CYS 66 K CYS 66 1_555 K SG CYS 231 K CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf34 L SG CYS 55 L CYS 55 1_555 L SG CYS 242 L CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf35 L SG CYS 62 L CYS 62 1_555 L SG CYS 236 L CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf36 L SG CYS 66 L CYS 66 1_555 L SG CYS 231 L CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C20 H24 N2 O2' _chem_comp.formula_weight 324.417 _chem_comp.id QDN _chem_comp.mon_nstd_flag . _chem_comp.name Quinidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "(9S)-6'-methoxycinchonan-9-ol" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C QDN sing 275 n n O C1 QDN sing 276 n n C9 C1 QDN doub 277 n y C9 C8 QDN sing 278 n y C1 C2 QDN sing 279 n y C8 C7 QDN doub 280 n y C2 C3 QDN doub 281 n y O1 C10 QDN sing 282 n n C3 C7 QDN sing 283 n y C3 C4 QDN sing 284 n y C7 N QDN sing 285 n y C10 C4 QDN sing 286 n n C10 C11 QDN sing 287 n n C4 C5 QDN doub 288 n y N C6 QDN doub 289 n y C6 C5 QDN sing 290 n y C16 N1 QDN sing 291 n n C16 C17 QDN sing 292 n n N1 C11 QDN sing 293 n n N1 C15 QDN sing 294 n n C11 C12 QDN sing 295 n n C18 C19 QDN doub 296 n n C18 C17 QDN sing 297 n n C17 C13 QDN sing 298 n n C12 C13 QDN sing 299 n n C15 C14 QDN sing 300 n n C13 C14 QDN sing 301 n n O1 H1 QDN sing 302 n n C10 H2 QDN sing 303 n n C11 H3 QDN sing 304 n n C15 H5 QDN sing 305 n n C15 H6 QDN sing 306 n n C14 H7 QDN sing 307 n n C14 H8 QDN sing 308 n n C16 H9 QDN sing 309 n n C16 H10 QDN sing 310 n n C17 H11 QDN sing 311 n n C18 H12 QDN sing 312 n n C19 H13 QDN sing 313 n n C19 H14 QDN sing 314 n n C13 H15 QDN sing 315 n n C12 H16 QDN sing 316 n n C12 H17 QDN sing 317 n n C5 H18 QDN sing 318 n n C6 H19 QDN sing 319 n n C2 H20 QDN sing 320 n n C8 H21 QDN sing 321 n n C9 H22 QDN sing 322 n n C H23 QDN sing 323 n n C H24 QDN sing 324 n n C H25 QDN sing 325 n n # _atom_sites.entry_id 8R7R _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 QDN A 1 401 301 QDN QDN . N 2 QDN B 1 401 301 QDN QDN . O 2 QDN C 1 401 302 QDN QDN . P 2 QDN D 1 401 301 QDN QDN . Q 2 QDN E 1 401 301 QDN QDN . R 2 QDN F 1 401 301 QDN QDN . S 2 QDN G 1 401 301 QDN QDN . T 2 QDN H 1 401 301 QDN QDN . U 2 QDN I 1 401 301 QDN QDN . V 2 QDN J 1 401 301 QDN QDN . W 2 QDN K 1 401 301 QDN QDN . X 2 QDN L 1 401 301 QDN QDN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 QDN . . . T 2 130.607 139.562 169.535 1 1334.2 ? O1 QDN 401 H 1 HETATM 2 C C10 QDN . . . T 2 131.233 140.794 169.229 1 1325.2 ? C10 QDN 401 H 1 HETATM 3 C C11 QDN . . . T 2 132.669 140.558 168.715 1 1315.1 ? C11 QDN 401 H 1 HETATM 4 N N1 QDN . . . T 2 132.695 140.087 167.308 1 1328.5 ? N1 QDN 401 H 1 HETATM 5 C C15 QDN . . . T 2 134.059 140.282 166.778 1 1296.6 ? C15 QDN 401 H 1 HETATM 6 C C14 QDN . . . T 2 135.116 139.705 167.734 1 1297.2 ? C14 QDN 401 H 1 HETATM 7 C C16 QDN . . . T 2 132.388 138.643 167.263 1 1303.9 ? C16 QDN 401 H 1 HETATM 8 C C17 QDN . . . T 2 133.523 137.796 167.895 1 1320 ? C17 QDN 401 H 1 HETATM 9 C C18 QDN . . . T 2 132.99 136.651 168.701 1 1329.1 ? C18 QDN 401 H 1 HETATM 10 C C19 QDN . . . T 2 133.21 135.398 168.488 1 1325.2 ? C19 QDN 401 H 1 HETATM 11 C C13 QDN . . . T 2 134.398 138.772 168.701 1 1313.7 ? C13 QDN 401 H 1 HETATM 12 C C12 QDN . . . T 2 133.504 139.613 169.61 1 1301.3 ? C12 QDN 401 H 1 HETATM 13 C C4 QDN . . . T 2 131.28 141.701 170.453 1 1354.6 ? C4 QDN 401 H 1 HETATM 14 C C5 QDN . . . T 2 131.303 141.162 171.71 1 1354.1 ? C5 QDN 401 H 1 HETATM 15 C C6 QDN . . . T 2 131.346 142.004 172.833 1 1365.7 ? C6 QDN 401 H 1 HETATM 16 N N QDN . . . T 2 131.365 143.315 172.777 1 1382.4 ? N QDN 401 H 1 HETATM 17 C C7 QDN . . . T 2 131.341 143.884 171.534 1 1368.2 ? C7 QDN 401 H 1 HETATM 18 C C3 QDN . . . T 2 131.298 143.122 170.331 1 1355.2 ? C3 QDN 401 H 1 HETATM 19 C C2 QDN . . . T 2 131.277 143.805 169.086 1 1328.3 ? C2 QDN 401 H 1 HETATM 20 C C8 QDN . . . T 2 131.362 145.297 171.451 1 1351.1 ? C8 QDN 401 H 1 HETATM 21 C C9 QDN . . . T 2 131.34 145.924 170.249 1 1342.9 ? C9 QDN 401 H 1 HETATM 22 C C1 QDN . . . T 2 131.297 145.177 169.053 1 1349.2 ? C1 QDN 401 H 1 HETATM 23 O O QDN . . . T 2 131.28 145.94 167.918 1 1339.2 ? O QDN 401 H 1 HETATM 24 C C QDN . . . T 2 131.226 145.271 166.662 1 1290.5 ? C QDN 401 H 1 HETATM 25 H H1 QDN . . . T 2 129.792 139.715 169.8 1 104.46 ? H1 QDN 401 H 1 HETATM 26 H H2 QDN . . . T 2 130.717 141.244 168.517 1 104.85 ? H2 QDN 401 H 1 HETATM 27 H H3 QDN . . . T 2 133.112 141.434 168.725 1 106.8 ? H3 QDN 401 H 1 HETATM 28 H H5 QDN . . . T 2 134.13 139.841 165.902 1 100.25 ? H5 QDN 401 H 1 HETATM 29 H H6 QDN . . . T 2 134.22 141.245 166.651 1 100.28 ? H6 QDN 401 H 1 HETATM 30 H H7 QDN . . . T 2 135.799 139.206 167.227 1 99.77 ? H7 QDN 401 H 1 HETATM 31 H H8 QDN . . . T 2 135.561 140.431 168.231 1 100.32 ? H8 QDN 401 H 1 HETATM 32 H H9 QDN . . . T 2 132.261 138.374 166.331 1 101.13 ? H9 QDN 401 H 1 HETATM 33 H H10 QDN . . . T 2 131.55 138.478 167.74 1 104.65 ? H10 QDN 401 H 1 HETATM 34 H H11 QDN . . . T 2 134.073 137.426 167.164 1 102.29 ? H11 QDN 401 H 1 HETATM 35 H H12 QDN . . . T 2 132.435 136.873 169.439 1 102.56 ? H12 QDN 401 H 1 HETATM 36 H H13 QDN . . . T 2 132.825 134.745 169.057 1 97.4 ? H13 QDN 401 H 1 HETATM 37 H H14 QDN . . . T 2 133.756 135.129 167.761 1 98.01 ? H14 QDN 401 H 1 HETATM 38 H H15 QDN . . . T 2 135.05 138.269 169.24 1 101.63 ? H15 QDN 401 H 1 HETATM 39 H H16 QDN . . . T 2 134.052 140.135 170.233 1 103.47 ? H16 QDN 401 H 1 HETATM 40 H H17 QDN . . . T 2 132.913 139.033 170.133 1 104.33 ? H17 QDN 401 H 1 HETATM 41 H H18 QDN . . . T 2 131.292 140.226 171.824 1 102.07 ? H18 QDN 401 H 1 HETATM 42 H H19 QDN . . . T 2 131.362 141.6 173.691 1 99.16 ? H19 QDN 401 H 1 HETATM 43 H H20 QDN . . . T 2 131.249 143.309 168.281 1 104.4 ? H20 QDN 401 H 1 HETATM 44 H H21 QDN . . . T 2 131.39 145.809 172.246 1 99.67 ? H21 QDN 401 H 1 HETATM 45 H H22 QDN . . . T 2 131.354 146.871 170.209 1 99.04 ? H22 QDN 401 H 1 HETATM 46 H H23 QDN . . . T 2 132.003 144.697 166.567 1 98.74 ? H23 QDN 401 H 1 HETATM 47 H H24 QDN . . . T 2 131.219 145.928 165.946 1 95.35 ? H24 QDN 401 H 1 HETATM 48 H H25 QDN . . . T 2 130.418 144.735 166.616 1 96.69 ? H25 QDN 401 H 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 61 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #