data_8R81
#
_model_server_result.job_id            7P21QBMre4qC0AIZOb9Fow 
_model_server_result.datetime_utc      '2025-06-21 07:23:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8r81 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    8R81 
#
_exptl.entry_id    8R81 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              405.513 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,4,6-trimethyl-~{N}-[1-(phenylmethyl)benzimidazol-5-yl]benzenesulfonamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8R81 
_cell.length_a            90.849 
_cell.length_b            90.849 
_cell.length_c            86.682 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8R81 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_664 -y+1,-x+1,-z-1/2 0 -1 0 -1 0 0 0 0 -1 90.849 90.849 -43.341 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C23 H23 N3 O2 S' 
_chem_comp.formula_weight    405.513 
_chem_comp.id                Y8B 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,4,6-trimethyl-~{N}-[1-(phenylmethyl)benzimidazol-5-yl]benzenesulfonamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAH CAJ Y8B doub 400 n y 
CAH CAI Y8B sing 401 n y 
CAJ CAL Y8B sing 402 n y 
CAI CAK Y8B doub 403 n y 
CAL CAW Y8B doub 404 n y 
CAK CAW Y8B sing 405 n y 
CAW CAF Y8B sing 406 n n 
CAF NAZ Y8B sing 407 n n 
CAO CAM Y8B doub 408 n y 
CAO CBB Y8B sing 409 n y 
CAM CAX Y8B sing 410 n y 
CAC CAV Y8B sing 411 n n 
NAZ CBB Y8B sing 412 n y 
NAZ CAN Y8B sing 413 n y 
CBB CBA Y8B doub 414 n y 
CAX NAG Y8B sing 415 n n 
CAX CAR Y8B doub 416 n y 
NAG SBC Y8B sing 417 n n 
CAN NAS Y8B doub 418 n y 
CAV CAQ Y8B doub 419 n y 
CAV CAY Y8B sing 420 n y 
CBA CAR Y8B sing 421 n y 
CBA NAS Y8B sing 422 n y 
CAQ CAT Y8B sing 423 n y 
OAD SBC Y8B doub 424 n n 
SBC CAY Y8B sing 425 n n 
SBC OAE Y8B doub 426 n n 
CAY CAU Y8B doub 427 n y 
CAT CAA Y8B sing 428 n n 
CAT CAP Y8B doub 429 n y 
CAU CAP Y8B sing 430 n y 
CAU CAB Y8B sing 431 n n 
CAA H1 Y8B sing 432 n n 
CAA H2 Y8B sing 433 n n 
CAA H3 Y8B sing 434 n n 
CAB H4 Y8B sing 435 n n 
CAB H5 Y8B sing 436 n n 
CAB H6 Y8B sing 437 n n 
CAC H7 Y8B sing 438 n n 
CAC H8 Y8B sing 439 n n 
CAC H9 Y8B sing 440 n n 
CAF H10 Y8B sing 441 n n 
CAF H11 Y8B sing 442 n n 
CAH H12 Y8B sing 443 n n 
CAI H13 Y8B sing 444 n n 
CAJ H14 Y8B sing 445 n n 
CAK H15 Y8B sing 446 n n 
CAL H16 Y8B sing 447 n n 
CAM H17 Y8B sing 448 n n 
CAN H18 Y8B sing 449 n n 
CAO H19 Y8B sing 450 n n 
CAP H20 Y8B sing 451 n n 
CAQ H21 Y8B sing 452 n n 
CAR H22 Y8B sing 453 n n 
NAG H23 Y8B sing 454 n n 
#
_atom_sites.entry_id                     8R81 
_atom_sites.fract_transf_matrix[1][1]    0.011007 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011007 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011536 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IPA A 1 501 1 IPA IPA . 
C 3 Y8B A 1 502 1 Y8B DRG . 
D 4 GOL A 1 503 1 GOL GOL . 
E 5 HOH A 1 601 11 HOH HOH . 
E 5 HOH A 2 602 71 HOH HOH . 
E 5 HOH A 3 603 63 HOH HOH . 
E 5 HOH A 4 604 9 HOH HOH . 
E 5 HOH A 5 605 53 HOH HOH . 
E 5 HOH A 6 606 69 HOH HOH . 
E 5 HOH A 7 607 45 HOH HOH . 
E 5 HOH A 8 608 74 HOH HOH . 
E 5 HOH A 9 609 3 HOH HOH . 
E 5 HOH A 10 610 7 HOH HOH . 
E 5 HOH A 11 611 1 HOH HOH . 
E 5 HOH A 12 612 21 HOH HOH . 
E 5 HOH A 13 613 10 HOH HOH . 
E 5 HOH A 14 614 2 HOH HOH . 
E 5 HOH A 15 615 32 HOH HOH . 
E 5 HOH A 16 616 24 HOH HOH . 
E 5 HOH A 17 617 33 HOH HOH . 
E 5 HOH A 18 618 5 HOH HOH . 
E 5 HOH A 19 619 66 HOH HOH . 
E 5 HOH A 20 620 12 HOH HOH . 
E 5 HOH A 21 621 22 HOH HOH . 
E 5 HOH A 22 622 4 HOH HOH . 
E 5 HOH A 23 623 75 HOH HOH . 
E 5 HOH A 24 624 61 HOH HOH . 
E 5 HOH A 25 625 49 HOH HOH . 
E 5 HOH A 26 626 64 HOH HOH . 
E 5 HOH A 27 627 62 HOH HOH . 
E 5 HOH A 28 628 70 HOH HOH . 
E 5 HOH A 29 629 77 HOH HOH . 
E 5 HOH A 30 630 31 HOH HOH . 
E 5 HOH A 31 631 13 HOH HOH . 
E 5 HOH A 32 632 58 HOH HOH . 
E 5 HOH A 33 633 86 HOH HOH . 
E 5 HOH A 34 634 68 HOH HOH . 
E 5 HOH A 35 635 20 HOH HOH . 
E 5 HOH A 36 636 40 HOH HOH . 
E 5 HOH A 37 637 84 HOH HOH . 
E 5 HOH A 38 638 15 HOH HOH . 
E 5 HOH A 39 639 51 HOH HOH . 
E 5 HOH A 40 640 8 HOH HOH . 
E 5 HOH A 41 641 34 HOH HOH . 
E 5 HOH A 42 642 28 HOH HOH . 
E 5 HOH A 43 643 46 HOH HOH . 
E 5 HOH A 44 644 39 HOH HOH . 
E 5 HOH A 45 645 37 HOH HOH . 
E 5 HOH A 46 646 57 HOH HOH . 
E 5 HOH A 47 647 36 HOH HOH . 
E 5 HOH A 48 648 73 HOH HOH . 
E 5 HOH A 49 649 60 HOH HOH . 
E 5 HOH A 50 650 18 HOH HOH . 
E 5 HOH A 51 651 80 HOH HOH . 
E 5 HOH A 52 652 59 HOH HOH . 
E 5 HOH A 53 653 47 HOH HOH . 
E 5 HOH A 54 654 42 HOH HOH . 
E 5 HOH A 55 655 55 HOH HOH . 
E 5 HOH A 56 656 85 HOH HOH . 
E 5 HOH A 57 657 44 HOH HOH . 
E 5 HOH A 58 658 82 HOH HOH . 
E 5 HOH A 59 659 78 HOH HOH . 
E 5 HOH A 60 660 65 HOH HOH . 
E 5 HOH A 61 661 50 HOH HOH . 
E 5 HOH A 62 662 38 HOH HOH . 
E 5 HOH A 63 663 83 HOH HOH . 
E 5 HOH A 64 664 30 HOH HOH . 
E 5 HOH A 65 665 79 HOH HOH . 
E 5 HOH A 66 666 48 HOH HOH . 
E 5 HOH A 67 667 81 HOH HOH . 
E 5 HOH A 68 668 76 HOH HOH . 
E 5 HOH A 69 669 54 HOH HOH . 
E 5 HOH A 70 670 67 HOH HOH . 
E 5 HOH A 71 671 72 HOH HOH . 
E 5 HOH A 72 672 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y8B . . . C 3 11.562 81.059 1.036 1 37.83 ? CAA Y8B 502 A 1 
HETATM 2 C CAB Y8B . . . C 3 8.448 78.26 3.262 1 28.22 ? CAB Y8B 502 A 1 
HETATM 3 C CAC Y8B . . . C 3 8.104 78.98 -1.599 1 22.11 ? CAC Y8B 502 A 1 
HETATM 4 C CAF Y8B . . . C 3 11.306 71.434 -2.294 1 39.13 ? CAF Y8B 502 A 1 
HETATM 5 C CAH Y8B . . . C 3 9.983 71.826 -6.294 1 27.3 ? CAH Y8B 502 A 1 
HETATM 6 C CAI Y8B . . . C 3 9.319 70.982 -5.399 1 31.01 ? CAI Y8B 502 A 1 
HETATM 7 C CAJ Y8B . . . C 3 11.095 72.538 -5.845 1 27.56 ? CAJ Y8B 502 A 1 
HETATM 8 C CAK Y8B . . . C 3 9.759 70.849 -4.078 1 30.59 ? CAK Y8B 502 A 1 
HETATM 9 C CAL Y8B . . . C 3 11.535 72.402 -4.522 1 30.75 ? CAL Y8B 502 A 1 
HETATM 10 C CAM Y8B . . . C 3 7.741 74.335 -1.695 1 38.1 ? CAM Y8B 502 A 1 
HETATM 11 C CAN Y8B . . . C 3 11.847 73.091 -0.509 1 41.43 ? CAN Y8B 502 A 1 
HETATM 12 C CAO Y8B . . . C 3 8.724 73.389 -1.965 1 33.87 ? CAO Y8B 502 A 1 
HETATM 13 C CAP Y8B . . . C 3 9.962 79.634 2.084 1 28.2 ? CAP Y8B 502 A 1 
HETATM 14 C CAQ Y8B . . . C 3 9.825 80.015 -0.292 1 26.9 ? CAQ Y8B 502 A 1 
HETATM 15 C CAR Y8B . . . C 3 9.148 75.29 -0.033 1 36.45 ? CAR Y8B 502 A 1 
HETATM 16 C CAT Y8B . . . C 3 10.45 80.233 0.933 1 39.95 ? CAT Y8B 502 A 1 
HETATM 17 C CAU Y8B . . . C 3 8.842 78.821 2.042 1 34.52 ? CAU Y8B 502 A 1 
HETATM 18 C CAV Y8B . . . C 3 8.711 79.186 -0.357 1 32.52 ? CAV Y8B 502 A 1 
HETATM 19 C CAW Y8B . . . C 3 10.866 71.565 -3.628 1 33.81 ? CAW Y8B 502 A 1 
HETATM 20 C CAX Y8B . . . C 3 7.902 75.294 -0.692 1 50.35 ? CAX Y8B 502 A 1 
HETATM 21 C CAY Y8B . . . C 3 8.228 78.546 0.801 1 42.64 ? CAY Y8B 502 A 1 
HETATM 22 C CBA Y8B . . . C 3 10.082 74.358 -0.354 1 43.04 ? CBA Y8B 502 A 1 
HETATM 23 C CBB Y8B . . . C 3 9.878 73.418 -1.307 1 39.82 ? CBB Y8B 502 A 1 
HETATM 24 N NAG Y8B . . . C 3 6.846 76.161 -0.514 1 39.91 ? NAG Y8B 502 A 1 
HETATM 25 N NAS Y8B . . . C 3 11.31 74.137 0.13 1 41.96 ? NAS Y8B 502 A 1 
HETATM 26 N NAZ Y8B . . . C 3 10.969 72.634 -1.403 1 42.38 ? NAZ Y8B 502 A 1 
HETATM 27 O OAD Y8B . . . C 3 5.572 78.39 0.297 1 31.09 ? OAD Y8B 502 A 1 
HETATM 28 O OAE Y8B . . . C 3 6.312 76.795 1.974 1 55.12 ? OAE Y8B 502 A 1 
HETATM 29 S SBC Y8B . . . C 3 6.728 77.47 0.667 1 40.43 ? SBC Y8B 502 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           29 
#