data_8R96 # _model_server_result.job_id 1CoqywK6pDDnzBwJf-ZGFw _model_server_result.datetime_utc '2024-12-12 14:28:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r96 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":403}' # _entry.id 8R96 # _exptl.entry_id 8R96 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.547 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EICOSANE _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8R96 _cell.length_a 85.565 _cell.length_b 295.665 _cell.length_c 185.5 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 M N N ? 2 N N N ? 2 Q N N ? 2 S N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 AA N N ? 2 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 242 A LYS 242 1_555 L C15 RET . A RET 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale2 B NZ LYS 242 B LYS 242 1_555 P C15 RET . B RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale3 C NZ LYS 242 C LYS 242 1_555 T C15 RET . C RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale4 D NZ LYS 242 D LYS 242 1_555 Z C15 RET . D RET 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale5 E NZ LYS 242 E LYS 242 1_555 DA C15 RET . E RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? # _chem_comp.formula 'C20 H42' _chem_comp.formula_weight 282.547 _chem_comp.id LFA _chem_comp.mon_nstd_flag . _chem_comp.name EICOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LFA sing 194 n n C1 H11 LFA sing 195 n n C1 H12 LFA sing 196 n n C1 H13 LFA sing 197 n n C2 C3 LFA sing 198 n n C2 H21 LFA sing 199 n n C2 H22 LFA sing 200 n n C3 C4 LFA sing 201 n n C3 H31 LFA sing 202 n n C3 H32 LFA sing 203 n n C4 C5 LFA sing 204 n n C4 H41 LFA sing 205 n n C4 H42 LFA sing 206 n n C5 C6 LFA sing 207 n n C5 H51 LFA sing 208 n n C5 H52 LFA sing 209 n n C6 C7 LFA sing 210 n n C6 H61 LFA sing 211 n n C6 H62 LFA sing 212 n n C7 C8 LFA sing 213 n n C7 H71 LFA sing 214 n n C7 H72 LFA sing 215 n n C8 C9 LFA sing 216 n n C8 H81 LFA sing 217 n n C8 H82 LFA sing 218 n n C9 C10 LFA sing 219 n n C9 H91 LFA sing 220 n n C9 H92 LFA sing 221 n n C10 C11 LFA sing 222 n n C10 H101 LFA sing 223 n n C10 H102 LFA sing 224 n n C11 C12 LFA sing 225 n n C11 H111 LFA sing 226 n n C11 H112 LFA sing 227 n n C12 C13 LFA sing 228 n n C12 H121 LFA sing 229 n n C12 H122 LFA sing 230 n n C13 C14 LFA sing 231 n n C13 H131 LFA sing 232 n n C13 H132 LFA sing 233 n n C14 C15 LFA sing 234 n n C14 H141 LFA sing 235 n n C14 H142 LFA sing 236 n n C15 C16 LFA sing 237 n n C15 H151 LFA sing 238 n n C15 H152 LFA sing 239 n n C16 C17 LFA sing 240 n n C16 H161 LFA sing 241 n n C16 H162 LFA sing 242 n n C17 C18 LFA sing 243 n n C17 H171 LFA sing 244 n n C17 H172 LFA sing 245 n n C18 C19 LFA sing 246 n n C18 H181 LFA sing 247 n n C18 H182 LFA sing 248 n n C19 C20 LFA sing 249 n n C19 H191 LFA sing 250 n n C19 H192 LFA sing 251 n n C20 H201 LFA sing 252 n n C20 H202 LFA sing 253 n n C20 H203 LFA sing 254 n n # _atom_sites.entry_id 8R96 _atom_sites.fract_transf_matrix[1][1] 0.011687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 LFA A 1 401 301 LFA LFA . G 2 LFA A 1 402 302 LFA LFA . H 3 PO4 A 1 403 2 PO4 PO4 . I 2 LFA A 1 404 1 LFA LFA . J 2 LFA A 1 405 5 LFA LFA . K 2 LFA A 1 406 6 LFA LFA . L 4 RET A 1 407 242 RET LYR . M 2 LFA B 1 401 301 LFA LFA . N 2 LFA B 1 402 302 LFA LFA . O 3 PO4 B 1 403 3 PO4 PO4 . P 4 RET B 1 404 242 RET LYR . Q 2 LFA C 1 401 301 LFA LFA . R 3 PO4 C 1 402 4 PO4 PO4 . S 2 LFA C 1 403 3 LFA LFA . T 4 RET C 1 404 242 RET LYR . U 5 OLA D 1 401 301 OLA OLA . V 3 PO4 D 1 402 5 PO4 PO4 . W 2 LFA D 1 403 4 LFA LFA . X 2 LFA D 1 404 7 LFA LFA . Y 2 LFA D 1 405 8 LFA LFA . Z 4 RET D 1 406 242 RET LYR . AA 2 LFA E 1 401 301 LFA LFA . BA 3 PO4 E 1 402 1 PO4 PO4 . CA 2 LFA E 1 403 2 LFA LFA . DA 4 RET E 1 404 242 RET LYR . EA 6 HOH A 1 501 26 HOH HOH . EA 6 HOH A 2 502 8 HOH HOH . EA 6 HOH A 3 503 23 HOH HOH . EA 6 HOH A 4 504 6 HOH HOH . FA 6 HOH B 1 501 16 HOH HOH . FA 6 HOH B 2 502 30 HOH HOH . FA 6 HOH B 3 503 13 HOH HOH . FA 6 HOH B 4 504 3 HOH HOH . FA 6 HOH B 5 505 27 HOH HOH . FA 6 HOH B 6 506 12 HOH HOH . FA 6 HOH B 7 507 20 HOH HOH . FA 6 HOH B 8 508 9 HOH HOH . FA 6 HOH B 9 509 17 HOH HOH . GA 6 HOH C 1 501 24 HOH HOH . GA 6 HOH C 2 502 1 HOH HOH . GA 6 HOH C 3 503 21 HOH HOH . GA 6 HOH C 4 504 10 HOH HOH . GA 6 HOH C 5 505 18 HOH HOH . GA 6 HOH C 6 506 2 HOH HOH . HA 6 HOH D 1 501 29 HOH HOH . HA 6 HOH D 2 502 25 HOH HOH . HA 6 HOH D 3 503 19 HOH HOH . HA 6 HOH D 4 504 4 HOH HOH . HA 6 HOH D 5 505 14 HOH HOH . HA 6 HOH D 6 506 7 HOH HOH . HA 6 HOH D 7 507 11 HOH HOH . IA 6 HOH E 1 501 28 HOH HOH . IA 6 HOH E 2 502 22 HOH HOH . IA 6 HOH E 3 503 15 HOH HOH . IA 6 HOH E 4 504 31 HOH HOH . IA 6 HOH E 5 505 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 LFA . . . CA 2 12.532 51.275 2.417 1 77.81 ? C8 LFA 403 E 1 HETATM 2 C C9 LFA . . . CA 2 12.524 50.121 1.444 1 82.65 ? C9 LFA 403 E 1 HETATM 3 C C10 LFA . . . CA 2 12.912 50.492 0.032 1 89.62 ? C10 LFA 403 E 1 HETATM 4 C C11 LFA . . . CA 2 12.394 51.837 -0.423 1 96.18 ? C11 LFA 403 E 1 HETATM 5 C C12 LFA . . . CA 2 12.377 52.027 -1.924 1 98.39 ? C12 LFA 403 E 1 HETATM 6 C C13 LFA . . . CA 2 11.448 53.123 -2.397 1 96.4 ? C13 LFA 403 E 1 HETATM 7 C C14 LFA . . . CA 2 11.725 53.617 -3.796 1 88.75 ? C14 LFA 403 E 1 HETATM 8 C C15 LFA . . . CA 2 10.879 54.796 -4.215 1 80.96 ? C15 LFA 403 E 1 HETATM 9 C C16 LFA . . . CA 2 11.532 56.143 -4.003 1 79.22 ? C16 LFA 403 E 1 HETATM 10 C C17 LFA . . . CA 2 10.856 57.278 -4.737 1 79.14 ? C17 LFA 403 E 1 HETATM 11 C C18 LFA . . . CA 2 11.187 58.656 -4.21 1 78.84 ? C18 LFA 403 E 1 HETATM 12 C C19 LFA . . . CA 2 10.343 59.762 -4.802 1 77.22 ? C19 LFA 403 E 1 HETATM 13 C C20 LFA . . . CA 2 10.902 61.153 -4.6 1 70.5 ? C20 LFA 403 E 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 143 _model_server_stats.query_time_ms 496 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #