data_8R96 # _model_server_result.job_id N6j4GjBMETHBJzY-0mamQA _model_server_result.datetime_utc '2024-12-12 14:48:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r96 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":403}' # _entry.id 8R96 # _exptl.entry_id 8R96 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8R96 _cell.length_a 85.565 _cell.length_b 295.665 _cell.length_c 185.5 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 O N N ? 3 R N N ? 3 V N N ? 3 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 242 A LYS 242 1_555 L C15 RET . A RET 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale2 B NZ LYS 242 B LYS 242 1_555 P C15 RET . B RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale3 C NZ LYS 242 C LYS 242 1_555 T C15 RET . C RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale4 D NZ LYS 242 D LYS 242 1_555 Z C15 RET . D RET 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale5 E NZ LYS 242 E LYS 242 1_555 DA C15 RET . E RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 374 n n P O2 PO4 sing 375 n n P O3 PO4 sing 376 n n P O4 PO4 sing 377 n n # _atom_sites.entry_id 8R96 _atom_sites.fract_transf_matrix[1][1] 0.011687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 LFA A 1 401 301 LFA LFA . G 2 LFA A 1 402 302 LFA LFA . H 3 PO4 A 1 403 2 PO4 PO4 . I 2 LFA A 1 404 1 LFA LFA . J 2 LFA A 1 405 5 LFA LFA . K 2 LFA A 1 406 6 LFA LFA . L 4 RET A 1 407 242 RET LYR . M 2 LFA B 1 401 301 LFA LFA . N 2 LFA B 1 402 302 LFA LFA . O 3 PO4 B 1 403 3 PO4 PO4 . P 4 RET B 1 404 242 RET LYR . Q 2 LFA C 1 401 301 LFA LFA . R 3 PO4 C 1 402 4 PO4 PO4 . S 2 LFA C 1 403 3 LFA LFA . T 4 RET C 1 404 242 RET LYR . U 5 OLA D 1 401 301 OLA OLA . V 3 PO4 D 1 402 5 PO4 PO4 . W 2 LFA D 1 403 4 LFA LFA . X 2 LFA D 1 404 7 LFA LFA . Y 2 LFA D 1 405 8 LFA LFA . Z 4 RET D 1 406 242 RET LYR . AA 2 LFA E 1 401 301 LFA LFA . BA 3 PO4 E 1 402 1 PO4 PO4 . CA 2 LFA E 1 403 2 LFA LFA . DA 4 RET E 1 404 242 RET LYR . EA 6 HOH A 1 501 26 HOH HOH . EA 6 HOH A 2 502 8 HOH HOH . EA 6 HOH A 3 503 23 HOH HOH . EA 6 HOH A 4 504 6 HOH HOH . FA 6 HOH B 1 501 16 HOH HOH . FA 6 HOH B 2 502 30 HOH HOH . FA 6 HOH B 3 503 13 HOH HOH . FA 6 HOH B 4 504 3 HOH HOH . FA 6 HOH B 5 505 27 HOH HOH . FA 6 HOH B 6 506 12 HOH HOH . FA 6 HOH B 7 507 20 HOH HOH . FA 6 HOH B 8 508 9 HOH HOH . FA 6 HOH B 9 509 17 HOH HOH . GA 6 HOH C 1 501 24 HOH HOH . GA 6 HOH C 2 502 1 HOH HOH . GA 6 HOH C 3 503 21 HOH HOH . GA 6 HOH C 4 504 10 HOH HOH . GA 6 HOH C 5 505 18 HOH HOH . GA 6 HOH C 6 506 2 HOH HOH . HA 6 HOH D 1 501 29 HOH HOH . HA 6 HOH D 2 502 25 HOH HOH . HA 6 HOH D 3 503 19 HOH HOH . HA 6 HOH D 4 504 4 HOH HOH . HA 6 HOH D 5 505 14 HOH HOH . HA 6 HOH D 6 506 7 HOH HOH . HA 6 HOH D 7 507 11 HOH HOH . IA 6 HOH E 1 501 28 HOH HOH . IA 6 HOH E 2 502 22 HOH HOH . IA 6 HOH E 3 503 15 HOH HOH . IA 6 HOH E 4 504 31 HOH HOH . IA 6 HOH E 5 505 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . O 3 38.51 25.481 -8.435 1 102.81 ? P PO4 403 B 1 HETATM 2 O O1 PO4 . . . O 3 37.889 25.521 -9.829 1 92 ? O1 PO4 403 B 1 HETATM 3 O O2 PO4 . . . O 3 40.029 25.41 -8.555 1 90.1 ? O2 PO4 403 B 1 HETATM 4 O O3 PO4 . . . O 3 38.002 24.253 -7.689 1 92.6 ? O3 PO4 403 B 1 HETATM 5 O O4 PO4 . . . O 3 38.119 26.738 -7.667 1 103.92 ? O4 PO4 403 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #