data_8R98 # _model_server_result.job_id IY2BQTy42F9tW-F6B89iwg _model_server_result.datetime_utc '2024-12-11 15:28:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":401}' # _entry.id 8R98 # _exptl.entry_id 8R98 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.461 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OLEIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.87 _cell.angle_gamma 90 _cell.entry_id 8R98 _cell.length_a 150.108 _cell.length_b 84.964 _cell.length_c 296.943 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA pentameric 5 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA 1 1 F,G,H,I,J,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 AA N N ? 5 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 242 A LYS 242 1_555 P C15 RET . A RET 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale2 B NZ LYS 242 B LYS 242 1_555 V C15 RET . B RET 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale3 C NZ LYS 242 C LYS 242 1_555 Z C15 RET . C RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale4 D NZ LYS 242 D LYS 242 1_555 EA C15 RET . D RET 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale5 E NZ LYS 242 E LYS 242 1_555 IA C15 RET . E RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale6 F NZ LYS 242 H LYS 242 1_555 MA C15 RET . H RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale7 G NZ LYS 242 G LYS 242 1_555 UA C15 RET . G RET 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale8 H NZ LYS 242 F LYS 242 1_555 ZA C15 RET . F RET 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale9 I NZ LYS 242 I LYS 242 1_555 DB C15 RET . I RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale10 J NZ LYS 242 K LYS 242 1_555 HB C15 RET . K RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? # _chem_comp.formula 'C18 H34 O2' _chem_comp.formula_weight 282.461 _chem_comp.id OLA _chem_comp.mon_nstd_flag . _chem_comp.name 'OLEIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 OLA doub 296 n n C1 O2 OLA sing 297 n n C1 C2 OLA sing 298 n n O2 HO2 OLA sing 299 n n C2 C3 OLA sing 300 n n C2 H21 OLA sing 301 n n C2 H22 OLA sing 302 n n C3 C4 OLA sing 303 n n C3 H31 OLA sing 304 n n C3 H32 OLA sing 305 n n C4 C5 OLA sing 306 n n C4 H41 OLA sing 307 n n C4 H42 OLA sing 308 n n C5 C6 OLA sing 309 n n C5 H51 OLA sing 310 n n C5 H52 OLA sing 311 n n C6 C7 OLA sing 312 n n C6 H61 OLA sing 313 n n C6 H62 OLA sing 314 n n C7 C8 OLA sing 315 n n C7 H71 OLA sing 316 n n C7 H72 OLA sing 317 n n C8 C9 OLA sing 318 n n C8 H81 OLA sing 319 n n C8 H82 OLA sing 320 n n C9 C10 OLA doub 321 z n C9 H9 OLA sing 322 n n C10 C11 OLA sing 323 n n C10 H10 OLA sing 324 n n C11 C12 OLA sing 325 n n C11 H111 OLA sing 326 n n C11 H112 OLA sing 327 n n C12 C13 OLA sing 328 n n C12 H121 OLA sing 329 n n C12 H122 OLA sing 330 n n C13 C14 OLA sing 331 n n C13 H131 OLA sing 332 n n C13 H132 OLA sing 333 n n C14 C15 OLA sing 334 n n C14 H141 OLA sing 335 n n C14 H142 OLA sing 336 n n C15 C16 OLA sing 337 n n C15 H151 OLA sing 338 n n C15 H152 OLA sing 339 n n C16 C17 OLA sing 340 n n C16 H161 OLA sing 341 n n C16 H162 OLA sing 342 n n C17 C18 OLA sing 343 n n C17 H171 OLA sing 344 n n C17 H172 OLA sing 345 n n C18 H181 OLA sing 346 n n C18 H182 OLA sing 347 n n C18 H183 OLA sing 348 n n # _atom_sites.entry_id 8R98 _atom_sites.fract_transf_matrix[1][1] 0.006662 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000802 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01177 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 LFA A 1 401 401 LFA LFA . L 2 LFA A 1 402 401 LFA LFA . M 2 LFA A 1 403 11 LFA LFA . N 2 LFA A 1 404 12 LFA LFA . O 3 PO4 A 1 405 2 PO4 PO4 . P 4 RET A 1 406 242 RET LYR . Q 2 LFA B 1 401 402 LFA LFA . R 2 LFA B 1 402 401 LFA LFA . S 2 LFA B 1 403 402 LFA LFA . T 2 LFA B 1 404 14 LFA LFA . U 3 PO4 B 1 405 3 PO4 PO4 . V 4 RET B 1 406 242 RET LYR . W 2 LFA C 1 401 401 LFA LFA . X 2 LFA C 1 402 9 LFA LFA . Y 3 PO4 C 1 403 4 PO4 PO4 . Z 4 RET C 1 404 242 RET LYR . AA 5 OLA D 1 401 401 OLA OLA . BA 2 LFA D 1 402 10 LFA LFA . CA 2 LFA D 1 403 13 LFA LFA . DA 3 PO4 D 1 404 5 PO4 PO4 . EA 4 RET D 1 405 242 RET LYR . FA 2 LFA E 1 401 401 LFA LFA . GA 2 LFA E 1 402 8 LFA LFA . HA 3 PO4 E 1 403 1 PO4 PO4 . IA 4 RET E 1 404 242 RET LYR . JA 2 LFA H 1 401 403 LFA LFA . KA 2 LFA H 1 402 3 LFA LFA . LA 3 PO4 H 1 403 9 PO4 PO4 . MA 4 RET H 1 404 242 RET LYR . NA 2 LFA G 1 401 401 LFA LFA . OA 2 LFA G 1 402 402 LFA LFA . PA 2 LFA G 1 403 1 LFA LFA . QA 2 LFA G 1 404 2 LFA LFA . RA 2 LFA G 1 405 5 LFA LFA . SA 2 LFA G 1 406 6 LFA LFA . TA 3 PO4 G 1 407 7 PO4 PO4 . UA 4 RET G 1 408 242 RET LYR . VA 2 LFA F 1 401 400 LFA LFA . WA 2 LFA F 1 402 401 LFA LFA . XA 2 LFA F 1 403 402 LFA LFA . YA 3 PO4 F 1 404 8 PO4 PO4 . ZA 4 RET F 1 405 242 RET LYR . AB 5 OLA I 1 401 401 OLA OLA . BB 2 LFA I 1 402 4 LFA LFA . CB 3 PO4 I 1 403 10 PO4 PO4 . DB 4 RET I 1 404 242 RET LYR . EB 2 LFA K 1 401 401 LFA LFA . FB 2 LFA K 1 402 7 LFA LFA . GB 3 PO4 K 1 403 6 PO4 PO4 . HB 4 RET K 1 404 242 RET LYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 OLA . . . AA 5 -45.033 11.799 15.734 1 32.15 ? C8 OLA 401 D 1 HETATM 2 C C9 OLA . . . AA 5 -44.973 10.47 16.422 1 39.05 ? C9 OLA 401 D 1 HETATM 3 C C10 OLA . . . AA 5 -45.838 9.496 16.287 1 58.82 ? C10 OLA 401 D 1 HETATM 4 C C11 OLA . . . AA 5 -45.756 8.158 16.957 1 74.28 ? C11 OLA 401 D 1 HETATM 5 C C12 OLA . . . AA 5 -46.977 7.813 17.754 1 86.71 ? C12 OLA 401 D 1 HETATM 6 C C13 OLA . . . AA 5 -47.214 8.713 18.955 1 93.43 ? C13 OLA 401 D 1 HETATM 7 C C14 OLA . . . AA 5 -48.416 8.337 19.786 1 99.04 ? C14 OLA 401 D 1 HETATM 8 C C15 OLA . . . AA 5 -48.708 9.292 20.918 1 102.3 ? C15 OLA 401 D 1 HETATM 9 C C16 OLA . . . AA 5 -47.721 9.225 22.059 1 98.81 ? C16 OLA 401 D 1 HETATM 10 C C17 OLA . . . AA 5 -48.116 10.03 23.271 1 97.92 ? C17 OLA 401 D 1 HETATM 11 C C18 OLA . . . AA 5 -47.207 9.829 24.46 1 92.28 ? C18 OLA 401 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #