data_8R98
#
_model_server_result.job_id            '_AphbPatgNorgqPhh2xgsg' 
_model_server_result.datetime_utc      '2024-12-11 15:37:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8r98 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":402}' 
#
_entry.id    8R98 
#
_exptl.entry_id    8R98 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              282.547 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            EICOSANE 
_entity.pdbx_number_of_molecules    28 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.87 
_cell.angle_gamma         90 
_cell.entry_id            8R98 
_cell.length_a            150.108 
_cell.length_b            84.964 
_cell.length_c            296.943 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8R98 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA pentameric 5 author_and_software_defined_assembly 1 
PISA pentameric 5 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA 1 1 
F,G,H,I,J,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 W N N 
? 2 X N N 
? 2 BA N N 
? 2 CA N N 
? 2 FA N N 
? 2 GA N N 
? 2 JA N N 
? 2 KA N N 
? 2 NA N N 
? 2 OA N N 
? 2 PA N N 
? 2 QA N N 
? 2 RA N N 
? 2 SA N N 
? 2 VA N N 
? 2 WA N N 
? 2 XA N N 
? 2 BB N N 
? 2 EB N N 
? 2 FB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 242 A LYS 242 1_555 P C15 RET . A RET 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
covale ? covale2 B NZ LYS 242 B LYS 242 1_555 V C15 RET . B RET 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? 
covale ? covale3 C NZ LYS 242 C LYS 242 1_555 Z C15 RET . C RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
covale ? covale4 D NZ LYS 242 D LYS 242 1_555 EA C15 RET . D RET 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale5 E NZ LYS 242 E LYS 242 1_555 IA C15 RET . E RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
covale ? covale6 F NZ LYS 242 H LYS 242 1_555 MA C15 RET . H RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
covale ? covale7 G NZ LYS 242 G LYS 242 1_555 UA C15 RET . G RET 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
covale ? covale8 H NZ LYS 242 F LYS 242 1_555 ZA C15 RET . F RET 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
covale ? covale9 I NZ LYS 242 I LYS 242 1_555 DB C15 RET . I RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
covale ? covale10 J NZ LYS 242 K LYS 242 1_555 HB C15 RET . K RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
#
_chem_comp.formula           'C20 H42' 
_chem_comp.formula_weight    282.547 
_chem_comp.id                LFA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              EICOSANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'LIPID FRAGMENT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LFA sing 192 n n 
C1 H11 LFA sing 193 n n 
C1 H12 LFA sing 194 n n 
C1 H13 LFA sing 195 n n 
C2 C3 LFA sing 196 n n 
C2 H21 LFA sing 197 n n 
C2 H22 LFA sing 198 n n 
C3 C4 LFA sing 199 n n 
C3 H31 LFA sing 200 n n 
C3 H32 LFA sing 201 n n 
C4 C5 LFA sing 202 n n 
C4 H41 LFA sing 203 n n 
C4 H42 LFA sing 204 n n 
C5 C6 LFA sing 205 n n 
C5 H51 LFA sing 206 n n 
C5 H52 LFA sing 207 n n 
C6 C7 LFA sing 208 n n 
C6 H61 LFA sing 209 n n 
C6 H62 LFA sing 210 n n 
C7 C8 LFA sing 211 n n 
C7 H71 LFA sing 212 n n 
C7 H72 LFA sing 213 n n 
C8 C9 LFA sing 214 n n 
C8 H81 LFA sing 215 n n 
C8 H82 LFA sing 216 n n 
C9 C10 LFA sing 217 n n 
C9 H91 LFA sing 218 n n 
C9 H92 LFA sing 219 n n 
C10 C11 LFA sing 220 n n 
C10 H101 LFA sing 221 n n 
C10 H102 LFA sing 222 n n 
C11 C12 LFA sing 223 n n 
C11 H111 LFA sing 224 n n 
C11 H112 LFA sing 225 n n 
C12 C13 LFA sing 226 n n 
C12 H121 LFA sing 227 n n 
C12 H122 LFA sing 228 n n 
C13 C14 LFA sing 229 n n 
C13 H131 LFA sing 230 n n 
C13 H132 LFA sing 231 n n 
C14 C15 LFA sing 232 n n 
C14 H141 LFA sing 233 n n 
C14 H142 LFA sing 234 n n 
C15 C16 LFA sing 235 n n 
C15 H151 LFA sing 236 n n 
C15 H152 LFA sing 237 n n 
C16 C17 LFA sing 238 n n 
C16 H161 LFA sing 239 n n 
C16 H162 LFA sing 240 n n 
C17 C18 LFA sing 241 n n 
C17 H171 LFA sing 242 n n 
C17 H172 LFA sing 243 n n 
C18 C19 LFA sing 244 n n 
C18 H181 LFA sing 245 n n 
C18 H182 LFA sing 246 n n 
C19 C20 LFA sing 247 n n 
C19 H191 LFA sing 248 n n 
C19 H192 LFA sing 249 n n 
C20 H201 LFA sing 250 n n 
C20 H202 LFA sing 251 n n 
C20 H203 LFA sing 252 n n 
#
_atom_sites.entry_id                     8R98 
_atom_sites.fract_transf_matrix[1][1]    0.006662 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000802 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01177 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003392 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 2 LFA A 1 401 401 LFA LFA . 
L 2 LFA A 1 402 401 LFA LFA . 
M 2 LFA A 1 403 11 LFA LFA . 
N 2 LFA A 1 404 12 LFA LFA . 
O 3 PO4 A 1 405 2 PO4 PO4 . 
P 4 RET A 1 406 242 RET LYR . 
Q 2 LFA B 1 401 402 LFA LFA . 
R 2 LFA B 1 402 401 LFA LFA . 
S 2 LFA B 1 403 402 LFA LFA . 
T 2 LFA B 1 404 14 LFA LFA . 
U 3 PO4 B 1 405 3 PO4 PO4 . 
V 4 RET B 1 406 242 RET LYR . 
W 2 LFA C 1 401 401 LFA LFA . 
X 2 LFA C 1 402 9 LFA LFA . 
Y 3 PO4 C 1 403 4 PO4 PO4 . 
Z 4 RET C 1 404 242 RET LYR . 
AA 5 OLA D 1 401 401 OLA OLA . 
BA 2 LFA D 1 402 10 LFA LFA . 
CA 2 LFA D 1 403 13 LFA LFA . 
DA 3 PO4 D 1 404 5 PO4 PO4 . 
EA 4 RET D 1 405 242 RET LYR . 
FA 2 LFA E 1 401 401 LFA LFA . 
GA 2 LFA E 1 402 8 LFA LFA . 
HA 3 PO4 E 1 403 1 PO4 PO4 . 
IA 4 RET E 1 404 242 RET LYR . 
JA 2 LFA H 1 401 403 LFA LFA . 
KA 2 LFA H 1 402 3 LFA LFA . 
LA 3 PO4 H 1 403 9 PO4 PO4 . 
MA 4 RET H 1 404 242 RET LYR . 
NA 2 LFA G 1 401 401 LFA LFA . 
OA 2 LFA G 1 402 402 LFA LFA . 
PA 2 LFA G 1 403 1 LFA LFA . 
QA 2 LFA G 1 404 2 LFA LFA . 
RA 2 LFA G 1 405 5 LFA LFA . 
SA 2 LFA G 1 406 6 LFA LFA . 
TA 3 PO4 G 1 407 7 PO4 PO4 . 
UA 4 RET G 1 408 242 RET LYR . 
VA 2 LFA F 1 401 400 LFA LFA . 
WA 2 LFA F 1 402 401 LFA LFA . 
XA 2 LFA F 1 403 402 LFA LFA . 
YA 3 PO4 F 1 404 8 PO4 PO4 . 
ZA 4 RET F 1 405 242 RET LYR . 
AB 5 OLA I 1 401 401 OLA OLA . 
BB 2 LFA I 1 402 4 LFA LFA . 
CB 3 PO4 I 1 403 10 PO4 PO4 . 
DB 4 RET I 1 404 242 RET LYR . 
EB 2 LFA K 1 401 401 LFA LFA . 
FB 2 LFA K 1 402 7 LFA LFA . 
GB 3 PO4 K 1 403 6 PO4 PO4 . 
HB 4 RET K 1 404 242 RET LYR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LFA . . . X 2 -48.763 -1.797 21.334 1 36.91 ? C1 LFA 402 C 1 
HETATM 2 C C2 LFA . . . X 2 -48.221 -2.661 20.217 1 34.79 ? C2 LFA 402 C 1 
HETATM 3 C C3 LFA . . . X 2 -48.608 -2.194 18.835 1 29.43 ? C3 LFA 402 C 1 
HETATM 4 C C4 LFA . . . X 2 -48.096 -3.066 17.709 1 21.77 ? C4 LFA 402 C 1 
HETATM 5 C C5 LFA . . . X 2 -48.49 -2.594 16.328 1 17.16 ? C5 LFA 402 C 1 
HETATM 6 C C6 LFA . . . X 2 -48.055 -3.51 15.209 1 15.62 ? C6 LFA 402 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           234 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#