data_8R98 # _model_server_result.job_id NZPZPYBb9PkcZm3GL98XSg _model_server_result.datetime_utc '2024-12-11 15:47:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GB","auth_seq_id":403}' # _entry.id 8R98 # _exptl.entry_id 8R98 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.87 _cell.angle_gamma 90 _cell.entry_id 8R98 _cell.length_a 150.108 _cell.length_b 84.964 _cell.length_c 296.943 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA pentameric 5 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA 1 1 F,G,H,I,J,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 O N N ? 3 U N N ? 3 Y N N ? 3 DA N N ? 3 HA N N ? 3 LA N N ? 3 TA N N ? 3 YA N N ? 3 CB N N ? 3 GB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 242 A LYS 242 1_555 P C15 RET . A RET 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale2 B NZ LYS 242 B LYS 242 1_555 V C15 RET . B RET 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale3 C NZ LYS 242 C LYS 242 1_555 Z C15 RET . C RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale4 D NZ LYS 242 D LYS 242 1_555 EA C15 RET . D RET 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale5 E NZ LYS 242 E LYS 242 1_555 IA C15 RET . E RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale6 F NZ LYS 242 H LYS 242 1_555 MA C15 RET . H RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale7 G NZ LYS 242 G LYS 242 1_555 UA C15 RET . G RET 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale8 H NZ LYS 242 F LYS 242 1_555 ZA C15 RET . F RET 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale9 I NZ LYS 242 I LYS 242 1_555 DB C15 RET . I RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale10 J NZ LYS 242 K LYS 242 1_555 HB C15 RET . K RET 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 372 n n P O2 PO4 sing 373 n n P O3 PO4 sing 374 n n P O4 PO4 sing 375 n n # _atom_sites.entry_id 8R98 _atom_sites.fract_transf_matrix[1][1] 0.006662 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000802 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01177 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 LFA A 1 401 401 LFA LFA . L 2 LFA A 1 402 401 LFA LFA . M 2 LFA A 1 403 11 LFA LFA . N 2 LFA A 1 404 12 LFA LFA . O 3 PO4 A 1 405 2 PO4 PO4 . P 4 RET A 1 406 242 RET LYR . Q 2 LFA B 1 401 402 LFA LFA . R 2 LFA B 1 402 401 LFA LFA . S 2 LFA B 1 403 402 LFA LFA . T 2 LFA B 1 404 14 LFA LFA . U 3 PO4 B 1 405 3 PO4 PO4 . V 4 RET B 1 406 242 RET LYR . W 2 LFA C 1 401 401 LFA LFA . X 2 LFA C 1 402 9 LFA LFA . Y 3 PO4 C 1 403 4 PO4 PO4 . Z 4 RET C 1 404 242 RET LYR . AA 5 OLA D 1 401 401 OLA OLA . BA 2 LFA D 1 402 10 LFA LFA . CA 2 LFA D 1 403 13 LFA LFA . DA 3 PO4 D 1 404 5 PO4 PO4 . EA 4 RET D 1 405 242 RET LYR . FA 2 LFA E 1 401 401 LFA LFA . GA 2 LFA E 1 402 8 LFA LFA . HA 3 PO4 E 1 403 1 PO4 PO4 . IA 4 RET E 1 404 242 RET LYR . JA 2 LFA H 1 401 403 LFA LFA . KA 2 LFA H 1 402 3 LFA LFA . LA 3 PO4 H 1 403 9 PO4 PO4 . MA 4 RET H 1 404 242 RET LYR . NA 2 LFA G 1 401 401 LFA LFA . OA 2 LFA G 1 402 402 LFA LFA . PA 2 LFA G 1 403 1 LFA LFA . QA 2 LFA G 1 404 2 LFA LFA . RA 2 LFA G 1 405 5 LFA LFA . SA 2 LFA G 1 406 6 LFA LFA . TA 3 PO4 G 1 407 7 PO4 PO4 . UA 4 RET G 1 408 242 RET LYR . VA 2 LFA F 1 401 400 LFA LFA . WA 2 LFA F 1 402 401 LFA LFA . XA 2 LFA F 1 403 402 LFA LFA . YA 3 PO4 F 1 404 8 PO4 PO4 . ZA 4 RET F 1 405 242 RET LYR . AB 5 OLA I 1 401 401 OLA OLA . BB 2 LFA I 1 402 4 LFA LFA . CB 3 PO4 I 1 403 10 PO4 PO4 . DB 4 RET I 1 404 242 RET LYR . EB 2 LFA K 1 401 401 LFA LFA . FB 2 LFA K 1 402 7 LFA LFA . GB 3 PO4 K 1 403 6 PO4 PO4 . HB 4 RET K 1 404 242 RET LYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . GB 3 -64.562 18.396 99.036 1 137.98 ? P PO4 403 K 1 HETATM 2 O O1 PO4 . . . GB 3 -63.443 18.12 98.039 1 134.34 ? O1 PO4 403 K 1 HETATM 3 O O2 PO4 . . . GB 3 -63.963 18.631 100.418 1 135.48 ? O2 PO4 403 K 1 HETATM 4 O O3 PO4 . . . GB 3 -65.506 17.2 99.088 1 131.99 ? O3 PO4 403 K 1 HETATM 5 O O4 PO4 . . . GB 3 -65.337 19.635 98.601 1 143.31 ? O4 PO4 403 K 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 5 #