data_8R9S # _model_server_result.job_id gcu39bDLrunG4XIayNkamw _model_server_result.datetime_utc '2024-11-22 13:33:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8r9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 8R9S # _exptl.entry_id 8R9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 634.751 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.7 _cell.angle_gamma 90 _cell.entry_id 8R9S _cell.length_a 40.294 _cell.length_b 145.584 _cell.length_c 66.833 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8R9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 337 A CYS 312 1_555 F C28 YPK . A YPK 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? covale ? covale2 B SG CYS 337 B CYS 312 1_555 I C28 YPK . B YPK 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? # _chem_comp.formula 'C28 H58 O15' _chem_comp.formula_weight 634.751 _chem_comp.id PE3 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O43 C42 PE3 sing 237 n n O43 H43 PE3 sing 238 n n C42 C41 PE3 sing 239 n n C42 H421 PE3 sing 240 n n C42 H422 PE3 sing 241 n n C41 O40 PE3 sing 242 n n C41 H411 PE3 sing 243 n n C41 H412 PE3 sing 244 n n O40 C39 PE3 sing 245 n n C39 C38 PE3 sing 246 n n C39 H391 PE3 sing 247 n n C39 H392 PE3 sing 248 n n C38 O37 PE3 sing 249 n n C38 H381 PE3 sing 250 n n C38 H382 PE3 sing 251 n n O37 C36 PE3 sing 252 n n C36 C35 PE3 sing 253 n n C36 H361 PE3 sing 254 n n C36 H362 PE3 sing 255 n n C35 O34 PE3 sing 256 n n C35 H351 PE3 sing 257 n n C35 H352 PE3 sing 258 n n O34 C33 PE3 sing 259 n n C33 C32 PE3 sing 260 n n C33 H331 PE3 sing 261 n n C33 H332 PE3 sing 262 n n C32 O31 PE3 sing 263 n n C32 H321 PE3 sing 264 n n C32 H322 PE3 sing 265 n n O31 C30 PE3 sing 266 n n C30 C29 PE3 sing 267 n n C30 H301 PE3 sing 268 n n C30 H302 PE3 sing 269 n n C29 O28 PE3 sing 270 n n C29 H291 PE3 sing 271 n n C29 H292 PE3 sing 272 n n O28 C27 PE3 sing 273 n n C27 C26 PE3 sing 274 n n C27 H271 PE3 sing 275 n n C27 H272 PE3 sing 276 n n C26 O25 PE3 sing 277 n n C26 H261 PE3 sing 278 n n C26 H262 PE3 sing 279 n n O25 C24 PE3 sing 280 n n C24 C23 PE3 sing 281 n n C24 H241 PE3 sing 282 n n C24 H242 PE3 sing 283 n n C23 O22 PE3 sing 284 n n C23 H231 PE3 sing 285 n n C23 H232 PE3 sing 286 n n O22 C21 PE3 sing 287 n n C21 C20 PE3 sing 288 n n C21 H211 PE3 sing 289 n n C21 H212 PE3 sing 290 n n C20 O19 PE3 sing 291 n n C20 H201 PE3 sing 292 n n C20 H202 PE3 sing 293 n n O19 C18 PE3 sing 294 n n C18 C17 PE3 sing 295 n n C18 H181 PE3 sing 296 n n C18 H182 PE3 sing 297 n n C17 O16 PE3 sing 298 n n C17 H171 PE3 sing 299 n n C17 H172 PE3 sing 300 n n O16 C15 PE3 sing 301 n n C15 C14 PE3 sing 302 n n C15 H151 PE3 sing 303 n n C15 H152 PE3 sing 304 n n C14 O13 PE3 sing 305 n n C14 H141 PE3 sing 306 n n C14 H142 PE3 sing 307 n n O13 C12 PE3 sing 308 n n C12 C11 PE3 sing 309 n n C12 H121 PE3 sing 310 n n C12 H122 PE3 sing 311 n n C11 O10 PE3 sing 312 n n C11 H111 PE3 sing 313 n n C11 H112 PE3 sing 314 n n O10 C9 PE3 sing 315 n n C9 C8 PE3 sing 316 n n C9 H91 PE3 sing 317 n n C9 H92 PE3 sing 318 n n C8 O7 PE3 sing 319 n n C8 H81 PE3 sing 320 n n C8 H82 PE3 sing 321 n n O7 C6 PE3 sing 322 n n C6 C5 PE3 sing 323 n n C6 H61 PE3 sing 324 n n C6 H62 PE3 sing 325 n n C5 O4 PE3 sing 326 n n C5 H51 PE3 sing 327 n n C5 H52 PE3 sing 328 n n O4 C3 PE3 sing 329 n n C3 C2 PE3 sing 330 n n C3 H31 PE3 sing 331 n n C3 H32 PE3 sing 332 n n C2 O1 PE3 sing 333 n n C2 H21 PE3 sing 334 n n C2 H22 PE3 sing 335 n n O1 HO1 PE3 sing 336 n n # _atom_sites.entry_id 8R9S _atom_sites.fract_transf_matrix[1][1] 0.024818 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002476 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006869 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015037 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PE3 A 1 401 401 PE3 PE3 . D 3 PEG A 1 402 403 PEG PEG . E 2 PE3 A 1 403 402 PE3 PE3 . F 4 YPK A 1 404 1 YPK L01 . G 2 PE3 B 1 401 402 PE3 PE3 . H 2 PE3 B 1 402 401 PE3 PE3 . I 4 YPK B 1 403 1 YPK L02 . J 5 HOH A 1 501 17 HOH HOH . J 5 HOH A 2 502 40 HOH HOH . J 5 HOH A 3 503 14 HOH HOH . J 5 HOH A 4 504 33 HOH HOH . J 5 HOH A 5 505 51 HOH HOH . J 5 HOH A 6 506 5 HOH HOH . J 5 HOH A 7 507 9 HOH HOH . J 5 HOH A 8 508 50 HOH HOH . J 5 HOH A 9 509 48 HOH HOH . J 5 HOH A 10 510 63 HOH HOH . J 5 HOH A 11 511 4 HOH HOH . J 5 HOH A 12 512 73 HOH HOH . J 5 HOH A 13 513 76 HOH HOH . J 5 HOH A 14 514 30 HOH HOH . J 5 HOH A 15 515 75 HOH HOH . J 5 HOH A 16 516 77 HOH HOH . J 5 HOH A 17 517 45 HOH HOH . J 5 HOH A 18 518 58 HOH HOH . J 5 HOH A 19 519 44 HOH HOH . J 5 HOH A 20 520 39 HOH HOH . J 5 HOH A 21 521 8 HOH HOH . J 5 HOH A 22 522 18 HOH HOH . J 5 HOH A 23 523 7 HOH HOH . J 5 HOH A 24 524 82 HOH HOH . J 5 HOH A 25 525 47 HOH HOH . J 5 HOH A 26 526 78 HOH HOH . J 5 HOH A 27 527 67 HOH HOH . J 5 HOH A 28 528 24 HOH HOH . J 5 HOH A 29 529 49 HOH HOH . J 5 HOH A 30 530 53 HOH HOH . J 5 HOH A 31 531 66 HOH HOH . J 5 HOH A 32 532 52 HOH HOH . J 5 HOH A 33 533 20 HOH HOH . J 5 HOH A 34 534 55 HOH HOH . J 5 HOH A 35 535 12 HOH HOH . K 5 HOH B 1 501 81 HOH HOH . K 5 HOH B 2 502 6 HOH HOH . K 5 HOH B 3 503 28 HOH HOH . K 5 HOH B 4 504 56 HOH HOH . K 5 HOH B 5 505 13 HOH HOH . K 5 HOH B 6 506 54 HOH HOH . K 5 HOH B 7 507 79 HOH HOH . K 5 HOH B 8 508 60 HOH HOH . K 5 HOH B 9 509 42 HOH HOH . K 5 HOH B 10 510 15 HOH HOH . K 5 HOH B 11 511 21 HOH HOH . K 5 HOH B 12 512 68 HOH HOH . K 5 HOH B 13 513 46 HOH HOH . K 5 HOH B 14 514 62 HOH HOH . K 5 HOH B 15 515 43 HOH HOH . K 5 HOH B 16 516 80 HOH HOH . K 5 HOH B 17 517 36 HOH HOH . K 5 HOH B 18 518 65 HOH HOH . K 5 HOH B 19 519 72 HOH HOH . K 5 HOH B 20 520 61 HOH HOH . K 5 HOH B 21 521 74 HOH HOH . K 5 HOH B 22 522 35 HOH HOH . K 5 HOH B 23 523 16 HOH HOH . K 5 HOH B 24 524 64 HOH HOH . K 5 HOH B 25 525 3 HOH HOH . K 5 HOH B 26 526 29 HOH HOH . K 5 HOH B 27 527 84 HOH HOH . K 5 HOH B 28 528 27 HOH HOH . K 5 HOH B 29 529 57 HOH HOH . K 5 HOH B 30 530 41 HOH HOH . K 5 HOH B 31 531 32 HOH HOH . K 5 HOH B 32 532 69 HOH HOH . K 5 HOH B 33 533 83 HOH HOH . K 5 HOH B 34 534 19 HOH HOH . K 5 HOH B 35 535 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O19 PE3 . . . G 2 -2.36 40.959 -20.581 1 11.28 ? O19 PE3 401 B 1 HETATM 2 C C18 PE3 . . . G 2 -1.159 41.726 -20.548 1 16.11 ? C18 PE3 401 B 1 HETATM 3 C C17 PE3 . . . G 2 0.046 40.803 -20.315 1 20.06 ? C17 PE3 401 B 1 HETATM 4 O O16 PE3 . . . G 2 1.206 41.538 -19.88 1 21.33 ? O16 PE3 401 B 1 HETATM 5 C C15 PE3 . . . G 2 2.073 40.853 -18.952 1 20.56 ? C15 PE3 401 B 1 HETATM 6 C C14 PE3 . . . G 2 1.667 41.126 -17.493 1 19.24 ? C14 PE3 401 B 1 HETATM 7 O O13 PE3 . . . G 2 2.756 41.641 -16.695 1 16.8 ? O13 PE3 401 B 1 HETATM 8 C C12 PE3 . . . G 2 2.64 43.033 -16.33 1 12.96 ? C12 PE3 401 B 1 HETATM 9 C C11 PE3 . . . G 2 1.789 43.282 -15.073 1 10.67 ? C11 PE3 401 B 1 HETATM 10 O O10 PE3 . . . G 2 1.021 42.133 -14.675 1 8.5 ? O10 PE3 401 B 1 HETATM 11 C C9 PE3 . . . G 2 0.105 42.357 -13.589 1 5.28 ? C9 PE3 401 B 1 HETATM 12 C C8 PE3 . . . G 2 0.745 41.982 -12.25 1 3.1 ? C8 PE3 401 B 1 HETATM 13 O O7 PE3 . . . G 2 0.126 42.684 -11.169 1 2.68 ? O7 PE3 401 B 1 HETATM 14 C C6 PE3 . . . G 2 -1.038 42.02 -10.669 1 1.49 ? C6 PE3 401 B 1 HETATM 15 C C5 PE3 . . . G 2 -1.553 42.746 -9.432 1 0.91 ? C5 PE3 401 B 1 HETATM 16 O O4 PE3 . . . G 2 -2.984 42.683 -9.42 1 0.5 ? O4 PE3 401 B 1 HETATM 17 C C3 PE3 . . . G 2 -3.61 43.819 -10.039 1 0.5 ? C3 PE3 401 B 1 HETATM 18 C C2 PE3 . . . G 2 -5.129 43.838 -9.839 1 0.5 ? C2 PE3 401 B 1 HETATM 19 O O1 PE3 . . . G 2 -5.578 42.694 -9.092 1 0.5 ? O1 PE3 401 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #