data_8R9S
#
_model_server_result.job_id            fznSg_QcSpxzpWHsIUKAig 
_model_server_result.datetime_utc      '2024-11-22 13:12:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8r9s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    8R9S 
#
_exptl.entry_id    8R9S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.7 
_cell.angle_gamma         90 
_cell.entry_id            8R9S 
_cell.length_a            40.294 
_cell.length_b            145.584 
_cell.length_c            66.833 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8R9S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1 
B,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 337 A CYS 312 1_555 F C28 YPK . A YPK 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? 
covale ? covale2 B SG CYS 337 B CYS 312 1_555 I C28 YPK . B YPK 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 337 n n 
C1 C2 PEG sing 338 n n 
C1 H11 PEG sing 339 n n 
C1 H12 PEG sing 340 n n 
O1 HO1 PEG sing 341 n n 
C2 O2 PEG sing 342 n n 
C2 H21 PEG sing 343 n n 
C2 H22 PEG sing 344 n n 
O2 C3 PEG sing 345 n n 
C3 C4 PEG sing 346 n n 
C3 H31 PEG sing 347 n n 
C3 H32 PEG sing 348 n n 
C4 O4 PEG sing 349 n n 
C4 H41 PEG sing 350 n n 
C4 H42 PEG sing 351 n n 
O4 HO4 PEG sing 352 n n 
#
_atom_sites.entry_id                     8R9S 
_atom_sites.fract_transf_matrix[1][1]    0.024818 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002476 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006869 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015037 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PE3 A 1 401 401 PE3 PE3 . 
D 3 PEG A 1 402 403 PEG PEG . 
E 2 PE3 A 1 403 402 PE3 PE3 . 
F 4 YPK A 1 404 1 YPK L01 . 
G 2 PE3 B 1 401 402 PE3 PE3 . 
H 2 PE3 B 1 402 401 PE3 PE3 . 
I 4 YPK B 1 403 1 YPK L02 . 
J 5 HOH A 1 501 17 HOH HOH . 
J 5 HOH A 2 502 40 HOH HOH . 
J 5 HOH A 3 503 14 HOH HOH . 
J 5 HOH A 4 504 33 HOH HOH . 
J 5 HOH A 5 505 51 HOH HOH . 
J 5 HOH A 6 506 5 HOH HOH . 
J 5 HOH A 7 507 9 HOH HOH . 
J 5 HOH A 8 508 50 HOH HOH . 
J 5 HOH A 9 509 48 HOH HOH . 
J 5 HOH A 10 510 63 HOH HOH . 
J 5 HOH A 11 511 4 HOH HOH . 
J 5 HOH A 12 512 73 HOH HOH . 
J 5 HOH A 13 513 76 HOH HOH . 
J 5 HOH A 14 514 30 HOH HOH . 
J 5 HOH A 15 515 75 HOH HOH . 
J 5 HOH A 16 516 77 HOH HOH . 
J 5 HOH A 17 517 45 HOH HOH . 
J 5 HOH A 18 518 58 HOH HOH . 
J 5 HOH A 19 519 44 HOH HOH . 
J 5 HOH A 20 520 39 HOH HOH . 
J 5 HOH A 21 521 8 HOH HOH . 
J 5 HOH A 22 522 18 HOH HOH . 
J 5 HOH A 23 523 7 HOH HOH . 
J 5 HOH A 24 524 82 HOH HOH . 
J 5 HOH A 25 525 47 HOH HOH . 
J 5 HOH A 26 526 78 HOH HOH . 
J 5 HOH A 27 527 67 HOH HOH . 
J 5 HOH A 28 528 24 HOH HOH . 
J 5 HOH A 29 529 49 HOH HOH . 
J 5 HOH A 30 530 53 HOH HOH . 
J 5 HOH A 31 531 66 HOH HOH . 
J 5 HOH A 32 532 52 HOH HOH . 
J 5 HOH A 33 533 20 HOH HOH . 
J 5 HOH A 34 534 55 HOH HOH . 
J 5 HOH A 35 535 12 HOH HOH . 
K 5 HOH B 1 501 81 HOH HOH . 
K 5 HOH B 2 502 6 HOH HOH . 
K 5 HOH B 3 503 28 HOH HOH . 
K 5 HOH B 4 504 56 HOH HOH . 
K 5 HOH B 5 505 13 HOH HOH . 
K 5 HOH B 6 506 54 HOH HOH . 
K 5 HOH B 7 507 79 HOH HOH . 
K 5 HOH B 8 508 60 HOH HOH . 
K 5 HOH B 9 509 42 HOH HOH . 
K 5 HOH B 10 510 15 HOH HOH . 
K 5 HOH B 11 511 21 HOH HOH . 
K 5 HOH B 12 512 68 HOH HOH . 
K 5 HOH B 13 513 46 HOH HOH . 
K 5 HOH B 14 514 62 HOH HOH . 
K 5 HOH B 15 515 43 HOH HOH . 
K 5 HOH B 16 516 80 HOH HOH . 
K 5 HOH B 17 517 36 HOH HOH . 
K 5 HOH B 18 518 65 HOH HOH . 
K 5 HOH B 19 519 72 HOH HOH . 
K 5 HOH B 20 520 61 HOH HOH . 
K 5 HOH B 21 521 74 HOH HOH . 
K 5 HOH B 22 522 35 HOH HOH . 
K 5 HOH B 23 523 16 HOH HOH . 
K 5 HOH B 24 524 64 HOH HOH . 
K 5 HOH B 25 525 3 HOH HOH . 
K 5 HOH B 26 526 29 HOH HOH . 
K 5 HOH B 27 527 84 HOH HOH . 
K 5 HOH B 28 528 27 HOH HOH . 
K 5 HOH B 29 529 57 HOH HOH . 
K 5 HOH B 30 530 41 HOH HOH . 
K 5 HOH B 31 531 32 HOH HOH . 
K 5 HOH B 32 532 69 HOH HOH . 
K 5 HOH B 33 533 83 HOH HOH . 
K 5 HOH B 34 534 19 HOH HOH . 
K 5 HOH B 35 535 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . D 3 24.9 35.481 8.874 1 0.5 ? C1 PEG 402 A 1 
HETATM 2 O O1 PEG . . . D 3 24.975 35.969 7.525 1 0.5 ? O1 PEG 402 A 1 
HETATM 3 C C2 PEG . . . D 3 25.281 36.566 9.885 1 0.5 ? C2 PEG 402 A 1 
HETATM 4 O O2 PEG . . . D 3 26.331 36.065 10.72 1 0.5 ? O2 PEG 402 A 1 
HETATM 5 C C3 PEG . . . D 3 26.653 36.943 11.797 1 0.5 ? C3 PEG 402 A 1 
HETATM 6 C C4 PEG . . . D 3 28.128 37.353 11.786 1 0.5 ? C4 PEG 402 A 1 
HETATM 7 O O4 PEG . . . D 3 28.296 38.61 12.466 1 0.5 ? O4 PEG 402 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           7 
#