data_8RAL # _model_server_result.job_id WB2eVrJXFK7ohbmAsMcYiQ _model_server_result.datetime_utc '2025-03-02 23:59:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ral # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 8RAL # _exptl.entry_id 8RAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RAL _cell.length_a 50.057 _cell.length_b 76.032 _cell.length_c 133.037 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 4 4 3 MAN MAN C1 O1 . O3 HO3 . sing 4 ? 4 5 4 MAN MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG D 1 NAG 4 n D NAG 2 D 2 NAG D 2 NAG 4 n D MAN 3 D 3 MAN D 3 MAN 4 n D MAN 4 D 4 MAN D 4 MAN 4 n D MAN 5 D 5 MAN D 5 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 76 A CYS 74 1_555 C SG CYS 13 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf2 A SG CYS 111 A CYS 109 1_555 A SG CYS 167 A CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf3 B SG CYS 40 B CYS 15 1_555 B SG CYS 104 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 B SG CYS 143 B CYS 118 1_555 B SG CYS 199 B CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? covale ? covale1 A ND2 ASN 122 A ASN 120 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale2 B C TYR 108 B TYR 83 1_555 B N VHF 109 B VHF 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C VHF 109 B VHF 84 1_555 B N GLY 110 B GLY 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale4 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale5 D O4 NAG . D NAG 2 1_555 D C1 MAN . D MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale6 D O3 MAN . D MAN 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale7 D O2 MAN . D MAN 4 1_555 D C1 MAN . D MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8RAL _atom_sites.fract_transf_matrix[1][1] 0.019977 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 EDO A 1 201 201 EDO EDO . F 5 EDO B 1 201 201 EDO EDO . G 6 HOH A 1 301 301 HOH HOH . G 6 HOH A 2 302 303 HOH HOH . G 6 HOH A 3 303 302 HOH HOH . G 6 HOH A 4 304 311 HOH HOH . G 6 HOH A 5 305 322 HOH HOH . G 6 HOH A 6 306 321 HOH HOH . G 6 HOH A 7 307 330 HOH HOH . G 6 HOH A 8 308 313 HOH HOH . G 6 HOH A 9 309 305 HOH HOH . G 6 HOH A 10 310 315 HOH HOH . G 6 HOH A 11 311 307 HOH HOH . G 6 HOH A 12 312 329 HOH HOH . G 6 HOH A 13 313 304 HOH HOH . G 6 HOH A 14 314 308 HOH HOH . G 6 HOH A 15 315 312 HOH HOH . G 6 HOH A 16 316 310 HOH HOH . G 6 HOH A 17 317 325 HOH HOH . G 6 HOH A 18 318 332 HOH HOH . G 6 HOH A 19 319 306 HOH HOH . G 6 HOH A 20 320 327 HOH HOH . G 6 HOH A 21 321 2 HOH HOH . G 6 HOH A 22 322 1 HOH HOH . G 6 HOH A 23 323 326 HOH HOH . G 6 HOH A 24 324 320 HOH HOH . G 6 HOH A 25 325 108 HOH HOH . G 6 HOH A 26 326 324 HOH HOH . G 6 HOH A 27 327 309 HOH HOH . G 6 HOH A 28 328 339 HOH HOH . G 6 HOH A 29 329 323 HOH HOH . G 6 HOH A 30 330 338 HOH HOH . G 6 HOH A 31 331 340 HOH HOH . G 6 HOH A 32 332 336 HOH HOH . G 6 HOH A 33 333 306 HOH HOH . G 6 HOH A 34 334 335 HOH HOH . G 6 HOH A 35 335 316 HOH HOH . G 6 HOH A 36 336 341 HOH HOH . G 6 HOH A 37 337 3 HOH HOH . G 6 HOH A 38 338 319 HOH HOH . G 6 HOH A 39 339 334 HOH HOH . G 6 HOH A 40 340 314 HOH HOH . G 6 HOH A 41 341 323 HOH HOH . G 6 HOH A 42 342 328 HOH HOH . G 6 HOH A 43 343 317 HOH HOH . G 6 HOH A 44 344 344 HOH HOH . G 6 HOH A 45 345 331 HOH HOH . G 6 HOH A 46 346 339 HOH HOH . G 6 HOH A 47 347 352 HOH HOH . G 6 HOH A 48 348 337 HOH HOH . G 6 HOH A 49 349 351 HOH HOH . G 6 HOH A 50 350 355 HOH HOH . G 6 HOH A 51 351 345 HOH HOH . G 6 HOH A 52 352 318 HOH HOH . G 6 HOH A 53 353 346 HOH HOH . G 6 HOH A 54 354 343 HOH HOH . G 6 HOH A 55 355 354 HOH HOH . G 6 HOH A 56 356 342 HOH HOH . G 6 HOH A 57 357 333 HOH HOH . G 6 HOH A 58 358 350 HOH HOH . G 6 HOH A 59 359 357 HOH HOH . G 6 HOH A 60 360 347 HOH HOH . G 6 HOH A 61 361 348 HOH HOH . G 6 HOH A 62 362 353 HOH HOH . G 6 HOH A 63 363 349 HOH HOH . G 6 HOH A 64 364 358 HOH HOH . G 6 HOH A 65 365 356 HOH HOH . G 6 HOH A 66 366 359 HOH HOH . G 6 HOH A 67 367 360 HOH HOH . G 6 HOH A 68 368 348 HOH HOH . G 6 HOH A 69 369 113 HOH HOH . H 6 HOH B 1 301 302 HOH HOH . H 6 HOH B 2 302 303 HOH HOH . H 6 HOH B 3 303 312 HOH HOH . H 6 HOH B 4 304 301 HOH HOH . H 6 HOH B 5 305 304 HOH HOH . H 6 HOH B 6 306 310 HOH HOH . H 6 HOH B 7 307 316 HOH HOH . H 6 HOH B 8 308 305 HOH HOH . H 6 HOH B 9 309 319 HOH HOH . H 6 HOH B 10 310 320 HOH HOH . H 6 HOH B 11 311 307 HOH HOH . H 6 HOH B 12 312 309 HOH HOH . H 6 HOH B 13 313 313 HOH HOH . H 6 HOH B 14 314 311 HOH HOH . H 6 HOH B 15 315 318 HOH HOH . H 6 HOH B 16 316 317 HOH HOH . H 6 HOH B 17 317 342 HOH HOH . H 6 HOH B 18 318 308 HOH HOH . H 6 HOH B 19 319 322 HOH HOH . H 6 HOH B 20 320 337 HOH HOH . H 6 HOH B 21 321 331 HOH HOH . H 6 HOH B 22 322 321 HOH HOH . H 6 HOH B 23 323 314 HOH HOH . H 6 HOH B 24 324 315 HOH HOH . H 6 HOH B 25 325 326 HOH HOH . H 6 HOH B 26 326 350 HOH HOH . H 6 HOH B 27 327 324 HOH HOH . H 6 HOH B 28 328 330 HOH HOH . H 6 HOH B 29 329 325 HOH HOH . H 6 HOH B 30 330 336 HOH HOH . H 6 HOH B 31 331 338 HOH HOH . H 6 HOH B 32 332 334 HOH HOH . H 6 HOH B 33 333 332 HOH HOH . H 6 HOH B 34 334 346 HOH HOH . H 6 HOH B 35 335 327 HOH HOH . H 6 HOH B 36 336 333 HOH HOH . H 6 HOH B 37 337 344 HOH HOH . H 6 HOH B 38 338 341 HOH HOH . H 6 HOH B 39 339 340 HOH HOH . H 6 HOH B 40 340 329 HOH HOH . H 6 HOH B 41 341 345 HOH HOH . H 6 HOH B 42 342 335 HOH HOH . H 6 HOH B 43 343 328 HOH HOH . H 6 HOH B 44 344 343 HOH HOH . H 6 HOH B 45 345 349 HOH HOH . H 6 HOH B 46 346 347 HOH HOH . H 6 HOH B 47 347 351 HOH HOH . H 6 HOH B 48 348 352 HOH HOH . I 6 HOH C 1 101 101 HOH HOH . I 6 HOH C 2 102 103 HOH HOH . I 6 HOH C 3 103 106 HOH HOH . I 6 HOH C 4 104 102 HOH HOH . I 6 HOH C 5 105 104 HOH HOH . I 6 HOH C 6 106 107 HOH HOH . I 6 HOH C 7 107 105 HOH HOH . I 6 HOH C 8 108 109 HOH HOH . I 6 HOH C 9 109 110 HOH HOH . I 6 HOH C 10 110 111 HOH HOH . I 6 HOH C 11 111 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 5 13.483 -7.572 30.853 1 74.12 0 C1 EDO 201 A 1 HETATM 2 O O1 EDO . . . E 5 13.319 -6.198 31.153 1 78.1 0 O1 EDO 201 A 1 HETATM 3 C C2 EDO . . . E 5 14.85 -8.087 31.139 1 77.67 0 C2 EDO 201 A 1 HETATM 4 O O2 EDO . . . E 5 15.875 -7.1 31.209 1 72.88 0 O2 EDO 201 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 524 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #