data_8RAO
#
_model_server_result.job_id            Zl2eOeueVcM6VW1ZI04sTg 
_model_server_result.datetime_utc      '2025-02-26 11:58:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rao 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":3001}' 
#
_entry.id    8RAO 
#
_exptl.entry_id    8RAO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RAO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RAO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 1364 O THR 1364 1_555 D MG MG . O MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc2 C O2B ADP . O ADP 3001 1_555 D MG MG . O MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 40 n n 
PB O2B ADP sing 41 n n 
PB O3B ADP sing 42 n n 
PB O3A ADP sing 43 n n 
O2B HOB2 ADP sing 44 n n 
O3B HOB3 ADP sing 45 n n 
PA O1A ADP doub 46 n n 
PA O2A ADP sing 47 n n 
PA O3A ADP sing 48 n n 
PA O5' ADP sing 49 n n 
O2A HOA2 ADP sing 50 n n 
O5' C5' ADP sing 51 n n 
C5' C4' ADP sing 52 n n 
C5' "H5'1" ADP sing 53 n n 
C5' "H5'2" ADP sing 54 n n 
C4' O4' ADP sing 55 n n 
C4' C3' ADP sing 56 n n 
C4' H4' ADP sing 57 n n 
O4' C1' ADP sing 58 n n 
C3' O3' ADP sing 59 n n 
C3' C2' ADP sing 60 n n 
C3' H3' ADP sing 61 n n 
O3' HO3' ADP sing 62 n n 
C2' O2' ADP sing 63 n n 
C2' C1' ADP sing 64 n n 
C2' H2' ADP sing 65 n n 
O2' HO2' ADP sing 66 n n 
C1' N9 ADP sing 67 n n 
C1' H1' ADP sing 68 n n 
N9 C8 ADP sing 69 n y 
N9 C4 ADP sing 70 n y 
C8 N7 ADP doub 71 n y 
C8 H8 ADP sing 72 n n 
N7 C5 ADP sing 73 n y 
C5 C6 ADP sing 74 n y 
C5 C4 ADP doub 75 n y 
C6 N6 ADP sing 76 n n 
C6 N1 ADP doub 77 n y 
N6 HN61 ADP sing 78 n n 
N6 HN62 ADP sing 79 n n 
N1 C2 ADP sing 80 n y 
C2 N3 ADP doub 81 n y 
C2 H2 ADP sing 82 n n 
N3 C4 ADP sing 83 n y 
#
_atom_sites.entry_id                     8RAO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ADP O 1 3001 3001 ADP ADP . 
D 4 MG O 1 3002 3002 MG MG . 
E 5 BEF O 1 3003 3003 BEF BEF . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 134.921 117.051 134.053 1 252.67 ? PB ADP 3001 O 1 
HETATM 2 O O1B ADP . . . C 3 135.121 117.778 132.745 1 252.67 ? O1B ADP 3001 O 1 
HETATM 3 O O2B ADP . . . C 3 134.98 117.934 135.276 1 252.67 ? O2B ADP 3001 O 1 
HETATM 4 O O3B ADP . . . C 3 135.702 115.764 134.175 1 252.67 ? O3B ADP 3001 O 1 
HETATM 5 P PA ADP . . . C 3 132.762 115.723 135.213 1 252.67 ? PA ADP 3001 O 1 
HETATM 6 O O1A ADP . . . C 3 133.601 114.482 135.4 1 252.67 ? O1A ADP 3001 O 1 
HETATM 7 O O2A ADP . . . C 3 132.549 116.656 136.381 1 252.67 ? O2A ADP 3001 O 1 
HETATM 8 O O3A ADP . . . C 3 133.388 116.564 133.992 1 252.67 ? O3A ADP 3001 O 1 
HETATM 9 O O5' ADP . . . C 3 131.323 115.267 134.655 1 252.67 ? O5' ADP 3001 O 1 
HETATM 10 C C5' ADP . . . C 3 130.6 114.259 135.357 1 252.67 ? C5' ADP 3001 O 1 
HETATM 11 C C4' ADP . . . C 3 129.214 114.054 134.758 1 252.67 ? C4' ADP 3001 O 1 
HETATM 12 O O4' ADP . . . C 3 128.713 112.779 135.167 1 252.67 ? O4' ADP 3001 O 1 
HETATM 13 C C3' ADP . . . C 3 128.222 115.114 135.215 1 252.67 ? C3' ADP 3001 O 1 
HETATM 14 O O3' ADP . . . C 3 127.807 115.924 134.109 1 252.67 ? O3' ADP 3001 O 1 
HETATM 15 C C2' ADP . . . C 3 127.049 114.359 135.813 1 252.67 ? C2' ADP 3001 O 1 
HETATM 16 O O2' ADP . . . C 3 125.832 114.689 135.135 1 252.67 ? O2' ADP 3001 O 1 
HETATM 17 C C1' ADP . . . C 3 127.377 112.88 135.663 1 252.67 ? C1' ADP 3001 O 1 
HETATM 18 N N9 ADP . . . C 3 127.287 112.193 136.977 1 252.67 ? N9 ADP 3001 O 1 
HETATM 19 C C8 ADP . . . C 3 128.255 112.175 137.914 1 252.67 ? C8 ADP 3001 O 1 
HETATM 20 N N7 ADP . . . C 3 127.86 111.457 138.998 1 252.67 ? N7 ADP 3001 O 1 
HETATM 21 C C5 ADP . . . C 3 126.617 111.002 138.759 1 252.67 ? C5 ADP 3001 O 1 
HETATM 22 C C6 ADP . . . C 3 125.619 110.183 139.486 1 252.67 ? C6 ADP 3001 O 1 
HETATM 23 N N6 ADP . . . C 3 125.879 109.692 140.723 1 252.67 ? N6 ADP 3001 O 1 
HETATM 24 N N1 ADP . . . C 3 124.439 109.944 138.871 1 252.67 ? N1 ADP 3001 O 1 
HETATM 25 C C2 ADP . . . C 3 124.159 110.421 137.644 1 252.67 ? C2 ADP 3001 O 1 
HETATM 26 N N3 ADP . . . C 3 125.023 111.17 136.933 1 252.67 ? N3 ADP 3001 O 1 
HETATM 27 C C4 ADP . . . C 3 126.243 111.49 137.424 1 252.67 ? C4 ADP 3001 O 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#