data_8RB8 # _model_server_result.job_id zuyNDKIPn3ixqjGNeaZ0jQ _model_server_result.datetime_utc '2024-11-22 20:38:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rb8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":401}' # _entry.id 8RB8 # _exptl.entry_id 8RB8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RB8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 I N N ? 9 M N N ? 9 N N N ? 9 P N N ? 9 Q N N ? 9 R N N ? 9 S N N ? 9 T N N ? 9 U N N ? 9 W N N ? 9 X N N ? 9 Y N N ? 9 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C OG1 THR 177 D THR 177 1_555 V P FMN . D FMN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.624 ? covale ? covale2 E OG1 THR 202 G THR 202 1_555 AA P FMN . G FMN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? metalc ? metalc1 A SG CYS 25 A CYS 25 1_555 H FE1 FES . A FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 A SG CYS 113 A CYS 113 1_555 H FE2 FES . A FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc3 H FE2 FES . A FES 200 1_555 D SG CYS 39 E CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc4 H FE1 FES . A FES 200 1_555 D SG CYS 122 E CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc5 B SG CYS 370 C CYS 370 1_555 K FE3 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc6 B SG CYS 373 C CYS 373 1_555 K FE4 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc7 B SG CYS 376 C CYS 376 1_555 K FE1 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc8 B SG CYS 380 C CYS 380 1_555 L FE4 SF4 . C SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc9 B SG CYS 409 C CYS 409 1_555 L FE1 SF4 . C SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc10 B SG CYS 412 C CYS 412 1_555 L FE2 SF4 . C SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc11 B SG CYS 415 C CYS 415 1_555 L FE3 SF4 . C SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc12 B SG CYS 419 C CYS 419 1_555 K FE2 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc13 G SG CYS 109 B CYS 109 1_555 CA FE1 SF4 . B SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc14 G SG CYS 112 B CYS 112 1_555 CA FE2 SF4 . B SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc15 G SG CYS 115 B CYS 115 1_555 CA FE3 SF4 . B SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc16 G SG CYS 119 B CYS 119 1_555 BA FE1 SF4 . B SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc17 G SG CYS 139 B CYS 139 1_555 BA FE4 SF4 . B SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc18 G SG CYS 142 B CYS 142 1_555 BA FE3 SF4 . B SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc19 G SG CYS 145 B CYS 145 1_555 BA FE2 SF4 . B SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc20 G SG CYS 149 B CYS 149 1_555 CA FE4 SF4 . B SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 250 n n C1B O1B LMT sing 251 n n C1B O5B LMT sing 252 n n C1B H1B LMT sing 253 n n C2B C3B LMT sing 254 n n C2B O2B LMT sing 255 n n C2B H2B LMT sing 256 n n C3B C4B LMT sing 257 n n C3B O3B LMT sing 258 n n C3B H3B LMT sing 259 n n C4B C5B LMT sing 260 n n C4B O4' LMT sing 261 n n C4B H4B LMT sing 262 n n C5B C6B LMT sing 263 n n C5B O5B LMT sing 264 n n C5B H5B LMT sing 265 n n C6B O6B LMT sing 266 n n C6B "H6'2" LMT sing 267 n n C6B "H6'1" LMT sing 268 n n O1B C4' LMT sing 269 n n O2B H2O1 LMT sing 270 n n O3B H3O1 LMT sing 271 n n O4' H4O1 LMT sing 272 n n O6B H6B LMT sing 273 n n C1' C2' LMT sing 274 n n C1' O1' LMT sing 275 n n C1' O5' LMT sing 276 n n C1' H1' LMT sing 277 n n C2' C3' LMT sing 278 n n C2' O2' LMT sing 279 n n C2' H2' LMT sing 280 n n C3' C4' LMT sing 281 n n C3' O3' LMT sing 282 n n C3' H3' LMT sing 283 n n C4' C5' LMT sing 284 n n C4' H4' LMT sing 285 n n C5' C6' LMT sing 286 n n C5' O5' LMT sing 287 n n C5' H5' LMT sing 288 n n C6' O6' LMT sing 289 n n C6' H6D LMT sing 290 n n C6' H6E LMT sing 291 n n O1' C1 LMT sing 292 n n O2' H2O2 LMT sing 293 n n O3' H3O2 LMT sing 294 n n O6' H6' LMT sing 295 n n C1 C2 LMT sing 296 n n C1 H12 LMT sing 297 n n C1 H11 LMT sing 298 n n C2 C3 LMT sing 299 n n C2 H22 LMT sing 300 n n C2 H21 LMT sing 301 n n C3 C4 LMT sing 302 n n C3 H32 LMT sing 303 n n C3 H31 LMT sing 304 n n C4 C5 LMT sing 305 n n C4 H42 LMT sing 306 n n C4 H41 LMT sing 307 n n C5 C6 LMT sing 308 n n C5 H52 LMT sing 309 n n C5 H51 LMT sing 310 n n C6 C7 LMT sing 311 n n C6 H62 LMT sing 312 n n C6 H61 LMT sing 313 n n C7 C8 LMT sing 314 n n C7 H72 LMT sing 315 n n C7 H71 LMT sing 316 n n C8 C9 LMT sing 317 n n C8 H82 LMT sing 318 n n C8 H81 LMT sing 319 n n C9 C10 LMT sing 320 n n C9 H92 LMT sing 321 n n C9 H91 LMT sing 322 n n C10 C11 LMT sing 323 n n C10 H102 LMT sing 324 n n C10 H101 LMT sing 325 n n C11 C12 LMT sing 326 n n C11 H112 LMT sing 327 n n C11 H111 LMT sing 328 n n C12 H123 LMT sing 329 n n C12 H122 LMT sing 330 n n C12 H121 LMT sing 331 n n # _atom_sites.entry_id 8RB8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 8 FES A 1 200 200 FES FES . I 9 LMT A 1 201 201 LMT LMT . J 10 FMN C 1 500 500 FMN FMN . K 11 SF4 C 1 501 501 SF4 SF4 . L 11 SF4 C 1 502 502 SF4 SF4 . M 9 LMT D 1 401 202 LMT LMT . N 9 LMT D 1 402 204 LMT LMT . O 12 RBF D 1 403 402 RBF RBF . P 9 LMT D 1 404 404 LMT LMT . Q 9 LMT D 1 405 405 LMT LMT . R 9 LMT D 1 406 406 LMT LMT . S 9 LMT D 1 407 407 LMT LMT . T 9 LMT D 1 408 409 LMT LMT . U 9 LMT D 1 409 411 LMT LMT . V 10 FMN D 1 410 177 FMN T1F . W 9 LMT E 1 301 408 LMT LMT . X 9 LMT E 1 302 301 LMT LMT . Y 9 LMT E 1 303 302 LMT LMT . Z 9 LMT E 1 304 303 LMT LMT . AA 10 FMN G 1 301 202 FMN T1F . BA 11 SF4 B 1 201 201 SF4 SF4 . CA 11 SF4 B 1 202 202 SF4 SF4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . M 9 93.448 95.677 94.057 1 62.8 ? C1B LMT 401 D 1 HETATM 2 C C2B LMT . . . M 9 92.757 95.955 92.704 1 63.14 ? C2B LMT 401 D 1 HETATM 3 C C3B LMT . . . M 9 93.773 96.403 91.631 1 63.51 ? C3B LMT 401 D 1 HETATM 4 C C4B LMT . . . M 9 95.228 96.099 92.064 1 64.2 ? C4B LMT 401 D 1 HETATM 5 C C5B LMT . . . M 9 95.23 94.733 92.77 1 62.15 ? C5B LMT 401 D 1 HETATM 6 C C6B LMT . . . M 9 96.665 94.298 93.048 1 58.5 ? C6B LMT 401 D 1 HETATM 7 O O1B LMT . . . M 9 92.483 95.261 94.969 1 63.52 ? O1B LMT 401 D 1 HETATM 8 O O2B LMT . . . M 9 92.111 94.801 92.324 1 61.16 ? O2B LMT 401 D 1 HETATM 9 O O3B LMT . . . M 9 93.599 97.722 91.293 1 60.78 ? O3B LMT 401 D 1 HETATM 10 O O4' LMT . . . M 9 96.059 96.044 90.968 1 62.93 ? O4' LMT 401 D 1 HETATM 11 O O5B LMT . . . M 9 94.465 94.716 93.962 1 62.77 ? O5B LMT 401 D 1 HETATM 12 O O6B LMT . . . M 9 97.434 94.455 91.921 1 57.06 ? O6B LMT 401 D 1 HETATM 13 C C1' LMT . . . M 9 90.759 98.812 96.242 1 63.6 ? C1' LMT 401 D 1 HETATM 14 C C2' LMT . . . M 9 92.194 98.728 95.653 1 64.25 ? C2' LMT 401 D 1 HETATM 15 C C3' LMT . . . M 9 92.957 97.417 96.039 1 59.92 ? C3' LMT 401 D 1 HETATM 16 C C4' LMT . . . M 9 92.092 96.13 96.021 1 60.82 ? C4' LMT 401 D 1 HETATM 17 C C5' LMT . . . M 9 90.64 96.571 95.772 1 62.19 ? C5' LMT 401 D 1 HETATM 18 C C6' LMT . . . M 9 89.632 95.453 95.792 1 59.52 ? C6' LMT 401 D 1 HETATM 19 O O1' LMT . . . M 9 90.761 99.674 97.305 1 61.76 ? O1' LMT 401 D 1 HETATM 20 O O2' LMT . . . M 9 92.123 98.83 94.279 1 58.84 ? O2' LMT 401 D 1 HETATM 21 O O3' LMT . . . M 9 93.531 97.558 97.264 1 56.8 ? O3' LMT 401 D 1 HETATM 22 O O5' LMT . . . M 9 90.309 97.548 96.711 1 62.89 ? O5' LMT 401 D 1 HETATM 23 O O6' LMT . . . M 9 89.747 94.854 97.022 1 59.29 ? O6' LMT 401 D 1 HETATM 24 C C1 LMT . . . M 9 89.939 99.321 98.392 1 58.96 ? C1 LMT 401 D 1 HETATM 25 C C2 LMT . . . M 9 90.887 98.911 99.477 1 57.18 ? C2 LMT 401 D 1 HETATM 26 C C3 LMT . . . M 9 91.978 99.875 99.795 1 57.44 ? C3 LMT 401 D 1 HETATM 27 C C4 LMT . . . M 9 91.364 101.004 100.576 1 59.15 ? C4 LMT 401 D 1 HETATM 28 C C5 LMT . . . M 9 91.053 100.559 101.963 1 56.34 ? C5 LMT 401 D 1 HETATM 29 C C6 LMT . . . M 9 90.601 101.69 102.824 1 55.6 ? C6 LMT 401 D 1 HETATM 30 C C7 LMT . . . M 9 91.774 102.541 103.213 1 57.69 ? C7 LMT 401 D 1 HETATM 31 C C8 LMT . . . M 9 92.762 101.694 103.935 1 59.81 ? C8 LMT 401 D 1 HETATM 32 C C9 LMT . . . M 9 93.537 102.414 104.988 1 58.91 ? C9 LMT 401 D 1 HETATM 33 C C10 LMT . . . M 9 92.625 102.576 106.17 1 58.39 ? C10 LMT 401 D 1 HETATM 34 C C11 LMT . . . M 9 93.334 103.201 107.328 1 58.75 ? C11 LMT 401 D 1 HETATM 35 C C12 LMT . . . M 9 93.816 104.576 107.007 1 58.08 ? C12 LMT 401 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 35 #