data_8RBM
#
_model_server_result.job_id            7s08X3dDBu5yU6JcUa4gYQ 
_model_server_result.datetime_utc      '2025-07-30 15:21:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rbm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":407}' 
#
_entry.id    8RBM 
#
_exptl.entry_id    8RBM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RBM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RBM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 I N N 
? 8 J N N 
? 8 N N N 
? 8 O N N 
? 8 Q N N 
? 8 R N N 
? 8 S N N 
? 8 T N N 
? 8 U N N 
? 8 V N N 
? 8 W N N 
? 8 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C OG1 THR 177 D THR 177 1_555 X P FMN . D FMN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.624 ? 
covale ? covale2 E OG1 THR 202 G THR 202 1_555 AA P FMN . G FMN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.636 ? 
metalc ? metalc1 A SG CYS 25 A CYS 25 1_555 H FE1 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc2 A SG CYS 113 A CYS 113 1_555 H FE2 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc3 H FE2 FES . A FES 201 1_555 D SG CYS 39 E CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc4 H FE1 FES . A FES 201 1_555 D SG CYS 122 E CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc5 B SG CYS 370 C CYS 370 1_555 L FE3 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc6 B SG CYS 373 C CYS 373 1_555 L FE4 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc7 B SG CYS 376 C CYS 376 1_555 L FE1 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc8 B SG CYS 380 C CYS 380 1_555 M FE4 SF4 . C SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc9 B SG CYS 409 C CYS 409 1_555 M FE1 SF4 . C SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc10 B SG CYS 412 C CYS 412 1_555 M FE2 SF4 . C SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc11 B SG CYS 415 C CYS 415 1_555 M FE3 SF4 . C SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc12 B SG CYS 419 C CYS 419 1_555 L FE2 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 250 n n 
C1B O1B LMT sing 251 n n 
C1B O5B LMT sing 252 n n 
C1B H1B LMT sing 253 n n 
C2B C3B LMT sing 254 n n 
C2B O2B LMT sing 255 n n 
C2B H2B LMT sing 256 n n 
C3B C4B LMT sing 257 n n 
C3B O3B LMT sing 258 n n 
C3B H3B LMT sing 259 n n 
C4B C5B LMT sing 260 n n 
C4B O4' LMT sing 261 n n 
C4B H4B LMT sing 262 n n 
C5B C6B LMT sing 263 n n 
C5B O5B LMT sing 264 n n 
C5B H5B LMT sing 265 n n 
C6B O6B LMT sing 266 n n 
C6B "H6'2" LMT sing 267 n n 
C6B "H6'1" LMT sing 268 n n 
O1B C4' LMT sing 269 n n 
O2B H2O1 LMT sing 270 n n 
O3B H3O1 LMT sing 271 n n 
O4' H4O1 LMT sing 272 n n 
O6B H6B LMT sing 273 n n 
C1' C2' LMT sing 274 n n 
C1' O1' LMT sing 275 n n 
C1' O5' LMT sing 276 n n 
C1' H1' LMT sing 277 n n 
C2' C3' LMT sing 278 n n 
C2' O2' LMT sing 279 n n 
C2' H2' LMT sing 280 n n 
C3' C4' LMT sing 281 n n 
C3' O3' LMT sing 282 n n 
C3' H3' LMT sing 283 n n 
C4' C5' LMT sing 284 n n 
C4' H4' LMT sing 285 n n 
C5' C6' LMT sing 286 n n 
C5' O5' LMT sing 287 n n 
C5' H5' LMT sing 288 n n 
C6' O6' LMT sing 289 n n 
C6' H6D LMT sing 290 n n 
C6' H6E LMT sing 291 n n 
O1' C1 LMT sing 292 n n 
O2' H2O2 LMT sing 293 n n 
O3' H3O2 LMT sing 294 n n 
O6' H6' LMT sing 295 n n 
C1 C2 LMT sing 296 n n 
C1 H12 LMT sing 297 n n 
C1 H11 LMT sing 298 n n 
C2 C3 LMT sing 299 n n 
C2 H22 LMT sing 300 n n 
C2 H21 LMT sing 301 n n 
C3 C4 LMT sing 302 n n 
C3 H32 LMT sing 303 n n 
C3 H31 LMT sing 304 n n 
C4 C5 LMT sing 305 n n 
C4 H42 LMT sing 306 n n 
C4 H41 LMT sing 307 n n 
C5 C6 LMT sing 308 n n 
C5 H52 LMT sing 309 n n 
C5 H51 LMT sing 310 n n 
C6 C7 LMT sing 311 n n 
C6 H62 LMT sing 312 n n 
C6 H61 LMT sing 313 n n 
C7 C8 LMT sing 314 n n 
C7 H72 LMT sing 315 n n 
C7 H71 LMT sing 316 n n 
C8 C9 LMT sing 317 n n 
C8 H82 LMT sing 318 n n 
C8 H81 LMT sing 319 n n 
C9 C10 LMT sing 320 n n 
C9 H92 LMT sing 321 n n 
C9 H91 LMT sing 322 n n 
C10 C11 LMT sing 323 n n 
C10 H102 LMT sing 324 n n 
C10 H101 LMT sing 325 n n 
C11 C12 LMT sing 326 n n 
C11 H112 LMT sing 327 n n 
C11 H111 LMT sing 328 n n 
C12 H123 LMT sing 329 n n 
C12 H122 LMT sing 330 n n 
C12 H121 LMT sing 331 n n 
#
_atom_sites.entry_id                     8RBM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 7 FES A 1 201 200 FES FES . 
I 8 LMT A 1 202 201 LMT LMT . 
J 8 LMT A 1 203 203 LMT LMT . 
K 9 FMN C 1 500 500 FMN FMN . 
L 10 SF4 C 1 501 501 SF4 SF4 . 
M 10 SF4 C 1 502 502 SF4 SF4 . 
N 8 LMT D 1 401 202 LMT LMT . 
O 8 LMT D 1 402 204 LMT LMT . 
P 11 RBF D 1 403 402 RBF RBF . 
Q 8 LMT D 1 404 404 LMT LMT . 
R 8 LMT D 1 405 405 LMT LMT . 
S 8 LMT D 1 406 406 LMT LMT . 
T 8 LMT D 1 407 407 LMT LMT . 
U 8 LMT D 1 408 409 LMT LMT . 
V 8 LMT D 1 409 410 LMT LMT . 
W 8 LMT D 1 410 411 LMT LMT . 
X 9 FMN D 1 411 177 FMN T1F . 
Y 12 PTY D 1 412 301 PTY PTY . 
Z 8 LMT E 1 301 408 LMT LMT . 
AA 9 FMN G 1 301 202 FMN T1F . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . T 8 125 70.3 120.904 1 76.51 ? C1B LMT 407 D 1 
HETATM 2 C C2B LMT . . . T 8 123.923 69.2 120.794 1 76.47 ? C2B LMT 407 D 1 
HETATM 3 C C3B LMT . . . T 8 123.222 68.976 122.148 1 76.89 ? C3B LMT 407 D 1 
HETATM 4 C C4B LMT . . . T 8 124.263 68.776 123.273 1 75.98 ? C4B LMT 407 D 1 
HETATM 5 C C5B LMT . . . T 8 125.219 69.976 123.223 1 75.96 ? C5B LMT 407 D 1 
HETATM 6 C C6B LMT . . . T 8 126.236 69.874 124.353 1 76.21 ? C6B LMT 407 D 1 
HETATM 7 O O1B LMT . . . T 8 124.38 71.537 121.037 1 78.14 ? O1B LMT 407 D 1 
HETATM 8 O O2B LMT . . . T 8 123.023 69.607 119.843 1 76.27 ? O2B LMT 407 D 1 
HETATM 9 O O3B LMT . . . T 8 122.314 67.951 122.086 1 77.18 ? O3B LMT 407 D 1 
HETATM 10 O O4' LMT . . . T 8 123.649 68.731 124.502 1 73.37 ? O4' LMT 407 D 1 
HETATM 11 O O5B LMT . . . T 8 125.863 70.071 121.979 1 76.2 ? O5B LMT 407 D 1 
HETATM 12 O O6B LMT . . . T 8 127.238 70.792 124.171 1 75.43 ? O6B LMT 407 D 1 
HETATM 13 C C1' LMT . . . T 8 124.195 75.277 119.299 1 77.3 ? C1' LMT 407 D 1 
HETATM 14 C C2' LMT . . . T 8 123.605 74.14 118.44 1 77.03 ? C2' LMT 407 D 1 
HETATM 15 C C3' LMT . . . T 8 123.416 72.856 119.294 1 77.92 ? C3' LMT 407 D 1 
HETATM 16 C C4' LMT . . . T 8 124.696 72.519 120.077 1 78.3 ? C4' LMT 407 D 1 
HETATM 17 C C5' LMT . . . T 8 125.076 73.815 120.822 1 78.07 ? C5' LMT 407 D 1 
HETATM 18 C C6' LMT . . . T 8 126.2 73.66 121.812 1 77.3 ? C6' LMT 407 D 1 
HETATM 19 O O1' LMT . . . T 8 124.504 76.357 118.519 1 76.71 ? O1' LMT 407 D 1 
HETATM 20 O O2' LMT . . . T 8 122.38 74.542 117.979 1 76.08 ? O2' LMT 407 D 1 
HETATM 21 O O3' LMT . . . T 8 123.063 71.8 118.507 1 77.6 ? O3' LMT 407 D 1 
HETATM 22 O O5' LMT . . . T 8 125.394 74.819 119.901 1 79.77 ? O5' LMT 407 D 1 
HETATM 23 O O6' LMT . . . T 8 126.689 74.922 122.03 1 77.43 ? O6' LMT 407 D 1 
HETATM 24 C C1 LMT . . . T 8 125.797 76.881 118.71 1 76.67 ? C1 LMT 407 D 1 
HETATM 25 C C2 LMT . . . T 8 125.592 78.141 119.492 1 74.64 ? C2 LMT 407 D 1 
HETATM 26 C C3 LMT . . . T 8 126.74 78.587 120.334 1 73.61 ? C3 LMT 407 D 1 
HETATM 27 C C4 LMT . . . T 8 126.258 79.725 121.19 1 73.36 ? C4 LMT 407 D 1 
HETATM 28 C C5 LMT . . . T 8 127.212 79.966 122.309 1 74.98 ? C5 LMT 407 D 1 
HETATM 29 C C6 LMT . . . T 8 127.049 81.327 122.895 1 74.93 ? C6 LMT 407 D 1 
HETATM 30 C C7 LMT . . . T 8 127.278 82.362 121.835 1 74.45 ? C7 LMT 407 D 1 
HETATM 31 C C8 LMT . . . T 8 127.273 83.711 122.465 1 76.09 ? C8 LMT 407 D 1 
HETATM 32 C C9 LMT . . . T 8 128.504 84.031 123.249 1 77.12 ? C9 LMT 407 D 1 
HETATM 33 C C10 LMT . . . T 8 129.652 84.078 122.28 1 75.91 ? C10 LMT 407 D 1 
HETATM 34 C C11 LMT . . . T 8 130.906 84.553 122.939 1 75.89 ? C11 LMT 407 D 1 
HETATM 35 C C12 LMT . . . T 8 130.786 85.97 123.39 1 74.66 ? C12 LMT 407 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           35 
#