data_8RBM
#
_model_server_result.job_id            k02RG1ROrmk1o6x6Bnf81Q 
_model_server_result.datetime_utc      '2025-07-30 15:21:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rbm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":500}' 
#
_entry.id    8RBM 
#
_exptl.entry_id    8RBM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RBM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RBM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 K N N 
? 9 X N N 
? 9 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C OG1 THR 177 D THR 177 1_555 X P FMN . D FMN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.624 ? 
covale ? covale2 E OG1 THR 202 G THR 202 1_555 AA P FMN . G FMN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.636 ? 
metalc ? metalc1 A SG CYS 25 A CYS 25 1_555 H FE1 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc2 A SG CYS 113 A CYS 113 1_555 H FE2 FES . A FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc3 H FE2 FES . A FES 201 1_555 D SG CYS 39 E CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc4 H FE1 FES . A FES 201 1_555 D SG CYS 122 E CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc5 B SG CYS 370 C CYS 370 1_555 L FE3 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc6 B SG CYS 373 C CYS 373 1_555 L FE4 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc7 B SG CYS 376 C CYS 376 1_555 L FE1 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc8 B SG CYS 380 C CYS 380 1_555 M FE4 SF4 . C SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc9 B SG CYS 409 C CYS 409 1_555 M FE1 SF4 . C SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc10 B SG CYS 412 C CYS 412 1_555 M FE2 SF4 . C SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc11 B SG CYS 415 C CYS 415 1_555 M FE3 SF4 . C SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc12 B SG CYS 419 C CYS 419 1_555 L FE2 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 87 n n 
N1 C10 FMN doub 88 n n 
C2 O2 FMN doub 89 n n 
C2 N3 FMN sing 90 n n 
N3 C4 FMN sing 91 n n 
N3 HN3 FMN sing 92 n n 
C4 O4 FMN doub 93 n n 
C4 C4A FMN sing 94 n n 
C4A N5 FMN doub 95 n n 
C4A C10 FMN sing 96 n n 
N5 C5A FMN sing 97 n n 
C5A C6 FMN doub 98 n y 
C5A C9A FMN sing 99 n y 
C6 C7 FMN sing 100 n y 
C6 H6 FMN sing 101 n n 
C7 C7M FMN sing 102 n n 
C7 C8 FMN doub 103 n y 
C7M HM71 FMN sing 104 n n 
C7M HM72 FMN sing 105 n n 
C7M HM73 FMN sing 106 n n 
C8 C8M FMN sing 107 n n 
C8 C9 FMN sing 108 n y 
C8M HM81 FMN sing 109 n n 
C8M HM82 FMN sing 110 n n 
C8M HM83 FMN sing 111 n n 
C9 C9A FMN doub 112 n y 
C9 H9 FMN sing 113 n n 
C9A N10 FMN sing 114 n n 
N10 C10 FMN sing 115 n n 
N10 C1' FMN sing 116 n n 
C1' C2' FMN sing 117 n n 
C1' "H1'1" FMN sing 118 n n 
C1' "H1'2" FMN sing 119 n n 
C2' O2' FMN sing 120 n n 
C2' C3' FMN sing 121 n n 
C2' H2' FMN sing 122 n n 
O2' HO2' FMN sing 123 n n 
C3' O3' FMN sing 124 n n 
C3' C4' FMN sing 125 n n 
C3' H3' FMN sing 126 n n 
O3' HO3' FMN sing 127 n n 
C4' O4' FMN sing 128 n n 
C4' C5' FMN sing 129 n n 
C4' H4' FMN sing 130 n n 
O4' HO4' FMN sing 131 n n 
C5' O5' FMN sing 132 n n 
C5' "H5'1" FMN sing 133 n n 
C5' "H5'2" FMN sing 134 n n 
O5' P FMN sing 135 n n 
P O1P FMN doub 136 n n 
P O2P FMN sing 137 n n 
P O3P FMN sing 138 n n 
O2P HOP2 FMN sing 139 n n 
O3P HOP3 FMN sing 140 n n 
#
_atom_sites.entry_id                     8RBM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 7 FES A 1 201 200 FES FES . 
I 8 LMT A 1 202 201 LMT LMT . 
J 8 LMT A 1 203 203 LMT LMT . 
K 9 FMN C 1 500 500 FMN FMN . 
L 10 SF4 C 1 501 501 SF4 SF4 . 
M 10 SF4 C 1 502 502 SF4 SF4 . 
N 8 LMT D 1 401 202 LMT LMT . 
O 8 LMT D 1 402 204 LMT LMT . 
P 11 RBF D 1 403 402 RBF RBF . 
Q 8 LMT D 1 404 404 LMT LMT . 
R 8 LMT D 1 405 405 LMT LMT . 
S 8 LMT D 1 406 406 LMT LMT . 
T 8 LMT D 1 407 407 LMT LMT . 
U 8 LMT D 1 408 409 LMT LMT . 
V 8 LMT D 1 409 410 LMT LMT . 
W 8 LMT D 1 410 411 LMT LMT . 
X 9 FMN D 1 411 177 FMN T1F . 
Y 12 PTY D 1 412 301 PTY PTY . 
Z 8 LMT E 1 301 408 LMT LMT . 
AA 9 FMN G 1 301 202 FMN T1F . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . K 9 118.452 138.615 153.202 1 64.52 ? N1 FMN 500 C 1 
HETATM 2 C C2 FMN . . . K 9 118.39 138.371 154.59 1 63.99 ? C2 FMN 500 C 1 
HETATM 3 O O2 FMN . . . K 9 118.056 139.213 155.39 1 64.3 ? O2 FMN 500 C 1 
HETATM 4 N N3 FMN . . . K 9 118.736 137.06 155.076 1 65.54 ? N3 FMN 500 C 1 
HETATM 5 C C4 FMN . . . K 9 119.128 136.023 154.268 1 62.01 ? C4 FMN 500 C 1 
HETATM 6 O O4 FMN . . . K 9 119.412 134.918 154.765 1 72.03 ? O4 FMN 500 C 1 
HETATM 7 C C4A FMN . . . K 9 119.196 136.276 152.831 1 55.72 ? C4A FMN 500 C 1 
HETATM 8 N N5 FMN . . . K 9 119.565 135.313 152.045 1 61.8 ? N5 FMN 500 C 1 
HETATM 9 C C5A FMN . . . K 9 119.613 135.601 150.702 1 61.09 ? C5A FMN 500 C 1 
HETATM 10 C C6 FMN . . . K 9 120.009 134.57 149.838 1 56.02 ? C6 FMN 500 C 1 
HETATM 11 C C7 FMN . . . K 9 120.072 134.802 148.5 1 54.66 ? C7 FMN 500 C 1 
HETATM 12 C C7M FMN . . . K 9 120.485 133.717 147.598 1 68.16 ? C7M FMN 500 C 1 
HETATM 13 C C8 FMN . . . K 9 119.742 136.072 147.981 1 56.75 ? C8 FMN 500 C 1 
HETATM 14 C C8M FMN . . . K 9 119.799 136.366 146.535 1 65.67 ? C8M FMN 500 C 1 
HETATM 15 C C9 FMN . . . K 9 119.356 137.089 148.8 1 67.09 ? C9 FMN 500 C 1 
HETATM 16 C C9A FMN . . . K 9 119.282 136.875 150.18 1 67.41 ? C9A FMN 500 C 1 
HETATM 17 N N10 FMN . . . K 9 118.905 137.893 151.035 1 67.03 ? N10 FMN 500 C 1 
HETATM 18 C C10 FMN . . . K 9 118.828 137.635 152.408 1 58.61 ? C10 FMN 500 C 1 
HETATM 19 C C1' FMN . . . K 9 118.517 139.261 150.484 1 58.51 ? C1' FMN 500 C 1 
HETATM 20 C C2' FMN . . . K 9 119.485 140.415 150.822 1 61.01 ? C2' FMN 500 C 1 
HETATM 21 O O2' FMN . . . K 9 120.522 139.837 151.564 1 72.48 ? O2' FMN 500 C 1 
HETATM 22 C C3' FMN . . . K 9 118.723 141.511 151.619 1 58.81 ? C3' FMN 500 C 1 
HETATM 23 O O3' FMN . . . K 9 117.502 140.941 151.986 1 61.08 ? O3' FMN 500 C 1 
HETATM 24 C C4' FMN . . . K 9 118.428 142.777 150.792 1 63.38 ? C4' FMN 500 C 1 
HETATM 25 O O4' FMN . . . K 9 118.905 142.578 149.498 1 68.46 ? O4' FMN 500 C 1 
HETATM 26 C C5' FMN . . . K 9 119.169 143.948 151.517 1 65.77 ? C5' FMN 500 C 1 
HETATM 27 O O5' FMN . . . K 9 118.756 143.923 152.793 1 63.02 ? O5' FMN 500 C 1 
HETATM 28 P P FMN . . . K 9 119.698 144.908 153.998 1 78.4 ? P FMN 500 C 1 
HETATM 29 O O1P FMN . . . K 9 118.843 144.642 155.203 1 65.85 ? O1P FMN 500 C 1 
HETATM 30 O O2P FMN . . . K 9 119.578 146.27 153.36 1 74.64 ? O2P FMN 500 C 1 
HETATM 31 O O3P FMN . . . K 9 121.04 144.212 153.914 1 71.79 ? O3P FMN 500 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           355 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#