data_8RBQ # _model_server_result.job_id G35LkJqG0uRYs_XD6BKaew _model_server_result.datetime_utc '2024-10-19 01:37:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rbq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":403}' # _entry.id 8RBQ # _exptl.entry_id 8RBQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RBQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RBQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 S N N ? 12 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D OG1 THR 202 G THR 202 1_555 N P FMN . G FMN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.628 ? metalc ? metalc1 A SG CYS 25 A CYS 25 1_555 H FE1 FES . A FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc2 A SG CYS 113 A CYS 113 1_555 H FE2 FES . A FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc3 H FE2 FES . A FES 200 1_555 C SG CYS 39 E CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc4 H FE1 FES . A FES 200 1_555 C SG CYS 122 E CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc5 B SG CYS 370 C CYS 370 1_555 K FE3 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc6 B SG CYS 373 C CYS 373 1_555 K FE4 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc7 B SG CYS 376 C CYS 376 1_555 K FE1 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc8 B SG CYS 380 C CYS 380 1_555 L FE4 SF4 . C SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc9 B SG CYS 409 C CYS 409 1_555 L FE1 SF4 . C SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc10 B SG CYS 412 C CYS 412 1_555 L FE2 SF4 . C SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc11 B SG CYS 415 C CYS 415 1_555 L FE3 SF4 . C SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc12 B SG CYS 419 C CYS 419 1_555 K FE2 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc13 F SG CYS 109 B CYS 109 1_555 P FE1 SF4 . B SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc14 F SG CYS 112 B CYS 112 1_555 P FE2 SF4 . B SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc15 F SG CYS 115 B CYS 115 1_555 P FE3 SF4 . B SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc16 F SG CYS 119 B CYS 119 1_555 O FE1 SF4 . B SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc17 F SG CYS 139 B CYS 139 1_555 O FE4 SF4 . B SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc18 F SG CYS 142 B CYS 142 1_555 O FE3 SF4 . B SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc19 F SG CYS 145 B CYS 145 1_555 O FE2 SF4 . B SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc20 F SG CYS 149 B CYS 149 1_555 P FE4 SF4 . B SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O4 PTY sing 415 n n C1 C6 PTY sing 416 n n C1 HC11 PTY sing 417 n n C1 HC12 PTY sing 418 n n C2 C3 PTY sing 419 n n C2 N1 PTY sing 420 n n C2 HC21 PTY sing 421 n n C2 HC22 PTY sing 422 n n C3 O11 PTY sing 423 n n C3 HC31 PTY sing 424 n n C3 HC32 PTY sing 425 n n O4 C30 PTY sing 426 n n C5 C6 PTY sing 427 n n C5 O14 PTY sing 428 n n C5 HC51 PTY sing 429 n n C5 HC52 PTY sing 430 n n C6 O7 PTY sing 431 n n C6 HC6 PTY sing 432 n n O7 C8 PTY sing 433 n n C8 O10 PTY doub 434 n n C8 C11 PTY sing 435 n n C11 C12 PTY sing 436 n n C11 H111 PTY sing 437 n n C11 H112 PTY sing 438 n n C12 C13 PTY sing 439 n n C12 H121 PTY sing 440 n n C12 H122 PTY sing 441 n n C13 C14 PTY sing 442 n n C13 H131 PTY sing 443 n n C13 H132 PTY sing 444 n n C14 C15 PTY sing 445 n n C14 H141 PTY sing 446 n n C14 H142 PTY sing 447 n n C15 C16 PTY sing 448 n n C15 H151 PTY sing 449 n n C15 H152 PTY sing 450 n n C16 C17 PTY sing 451 n n C16 H161 PTY sing 452 n n C16 H162 PTY sing 453 n n C17 C18 PTY sing 454 n n C17 H171 PTY sing 455 n n C17 H172 PTY sing 456 n n C18 C19 PTY sing 457 n n C18 H181 PTY sing 458 n n C18 H182 PTY sing 459 n n C19 C20 PTY sing 460 n n C19 H191 PTY sing 461 n n C19 H192 PTY sing 462 n n C20 C21 PTY sing 463 n n C20 H201 PTY sing 464 n n C20 H202 PTY sing 465 n n C21 C22 PTY sing 466 n n C21 H211 PTY sing 467 n n C21 H212 PTY sing 468 n n C22 C23 PTY sing 469 n n C22 H221 PTY sing 470 n n C22 H222 PTY sing 471 n n C23 C24 PTY sing 472 n n C23 H231 PTY sing 473 n n C23 H232 PTY sing 474 n n C24 C25 PTY sing 475 n n C24 H241 PTY sing 476 n n C24 H242 PTY sing 477 n n C25 C26 PTY sing 478 n n C25 H251 PTY sing 479 n n C25 H252 PTY sing 480 n n C26 C27 PTY sing 481 n n C26 H261 PTY sing 482 n n C26 H262 PTY sing 483 n n C27 C28 PTY sing 484 n n C27 H271 PTY sing 485 n n C27 H272 PTY sing 486 n n C28 C29 PTY sing 487 n n C28 H281 PTY sing 488 n n C28 H282 PTY sing 489 n n C29 H291 PTY sing 490 n n C29 H292 PTY sing 491 n n C29 H293 PTY sing 492 n n C30 C31 PTY sing 493 n n C30 O30 PTY doub 494 n n C31 C32 PTY sing 495 n n C31 H311 PTY sing 496 n n C31 H312 PTY sing 497 n n C32 C33 PTY sing 498 n n C32 H321 PTY sing 499 n n C32 H322 PTY sing 500 n n C33 C34 PTY sing 501 n n C33 H331 PTY sing 502 n n C33 H332 PTY sing 503 n n C34 C35 PTY sing 504 n n C34 H341 PTY sing 505 n n C34 H342 PTY sing 506 n n C35 C36 PTY sing 507 n n C35 H351 PTY sing 508 n n C35 H352 PTY sing 509 n n C36 C37 PTY sing 510 n n C36 H361 PTY sing 511 n n C36 H362 PTY sing 512 n n C37 C38 PTY sing 513 n n C37 H371 PTY sing 514 n n C37 H372 PTY sing 515 n n C38 C39 PTY sing 516 n n C38 H381 PTY sing 517 n n C38 H382 PTY sing 518 n n C39 C40 PTY sing 519 n n C39 H391 PTY sing 520 n n C39 H392 PTY sing 521 n n C40 C41 PTY sing 522 n n C40 H401 PTY sing 523 n n C40 H402 PTY sing 524 n n C41 C42 PTY sing 525 n n C41 H411 PTY sing 526 n n C41 H412 PTY sing 527 n n C42 C43 PTY sing 528 n n C42 H421 PTY sing 529 n n C42 H422 PTY sing 530 n n C43 C44 PTY sing 531 n n C43 H431 PTY sing 532 n n C43 H432 PTY sing 533 n n C44 H441 PTY sing 534 n n C44 H442 PTY sing 535 n n C44 H443 PTY sing 536 n n P1 O11 PTY sing 537 n n P1 O12 PTY sing 538 n n P1 O13 PTY doub 539 n n P1 O14 PTY sing 540 n n O12 H12O PTY sing 541 n n N1 HN11 PTY sing 542 n n N1 HN12 PTY sing 543 n n # _atom_sites.entry_id 8RBQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 8 FES A 1 200 200 FES FES . I 9 LMT A 1 201 201 LMT LMT . J 10 FMN C 1 500 500 FMN FMN . K 11 SF4 C 1 501 501 SF4 SF4 . L 11 SF4 C 1 502 502 SF4 SF4 . M 9 LMT E 1 301 409 LMT LMT . N 10 FMN G 1 301 202 FMN T1F . O 11 SF4 B 1 201 201 SF4 SF4 . P 11 SF4 B 1 202 202 SF4 SF4 . Q 9 LMT D 1 401 202 LMT LMT . R 9 LMT D 1 402 204 LMT LMT . S 12 PTY D 1 403 301 PTY PTY . T 13 RBF D 1 404 402 RBF RBF . U 9 LMT D 1 405 406 LMT LMT . V 9 LMT D 1 406 407 LMT LMT . W 9 LMT D 1 407 412 LMT LMT . X 12 PTY D 1 408 413 PTY PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . S 12 94.564 117.376 113.015 1 82.8 ? C1 PTY 403 D 1 HETATM 2 C C2 PTY . . . S 12 90.37 117.041 119.918 1 82.06 ? C2 PTY 403 D 1 HETATM 3 C C3 PTY . . . S 12 90.964 116.293 118.735 1 82.58 ? C3 PTY 403 D 1 HETATM 4 O O4 PTY . . . S 12 93.351 117.707 112.359 1 86.13 ? O4 PTY 403 D 1 HETATM 5 C C5 PTY . . . S 12 93.263 117.031 115.091 1 78.28 ? C5 PTY 403 D 1 HETATM 6 C C6 PTY . . . S 12 94.439 117.767 114.473 1 82.24 ? C6 PTY 403 D 1 HETATM 7 O O7 PTY . . . S 12 94.226 119.17 114.55 1 88.92 ? O7 PTY 403 D 1 HETATM 8 C C8 PTY . . . S 12 95.483 119.882 114.414 1 85.39 ? C8 PTY 403 D 1 HETATM 9 O O10 PTY . . . S 12 96.523 119.293 114.637 1 84.79 ? O10 PTY 403 D 1 HETATM 10 C C11 PTY . . . S 12 95.512 121.325 113.986 1 80.95 ? C11 PTY 403 D 1 HETATM 11 C C12 PTY . . . S 12 96.869 121.905 114.344 1 78.59 ? C12 PTY 403 D 1 HETATM 12 C C13 PTY . . . S 12 97.225 123.03 113.39 1 80.62 ? C13 PTY 403 D 1 HETATM 13 C C14 PTY . . . S 12 97.429 122.456 111.999 1 81.66 ? C14 PTY 403 D 1 HETATM 14 C C15 PTY . . . S 12 97.926 123.531 111.05 1 79.47 ? C15 PTY 403 D 1 HETATM 15 C C16 PTY . . . S 12 96.875 124.613 110.879 1 80.95 ? C16 PTY 403 D 1 HETATM 16 C C17 PTY . . . S 12 97.411 125.731 110 1 82.16 ? C17 PTY 403 D 1 HETATM 17 C C18 PTY . . . S 12 97.901 125.195 108.663 1 80.64 ? C18 PTY 403 D 1 HETATM 18 C C19 PTY . . . S 12 98.383 126.357 107.808 1 78.39 ? C19 PTY 403 D 1 HETATM 19 C C20 PTY . . . S 12 98.952 125.911 106.469 1 84.59 ? C20 PTY 403 D 1 HETATM 20 C C21 PTY . . . S 12 99.407 127.138 105.692 1 81.93 ? C21 PTY 403 D 1 HETATM 21 C C22 PTY . . . S 12 99.983 126.8 104.328 1 81.74 ? C22 PTY 403 D 1 HETATM 22 C C23 PTY . . . S 12 100.176 128.079 103.524 1 82.26 ? C23 PTY 403 D 1 HETATM 23 C C24 PTY . . . S 12 98.838 128.755 103.243 1 84.3 ? C24 PTY 403 D 1 HETATM 24 C C25 PTY . . . S 12 97.931 127.865 102.401 1 84.88 ? C25 PTY 403 D 1 HETATM 25 C C26 PTY . . . S 12 96.591 128.536 102.117 1 82.39 ? C26 PTY 403 D 1 HETATM 26 C C27 PTY . . . S 12 96.738 129.755 101.212 1 83.43 ? C27 PTY 403 D 1 HETATM 27 C C28 PTY . . . S 12 95.373 130.312 100.812 1 83.93 ? C28 PTY 403 D 1 HETATM 28 C C29 PTY . . . S 12 95.482 131.368 99.731 1 82.13 ? C29 PTY 403 D 1 HETATM 29 C C30 PTY . . . S 12 92.738 116.697 111.526 1 87.09 ? C30 PTY 403 D 1 HETATM 30 C C31 PTY . . . S 12 92.342 117.012 110.107 1 82.27 ? C31 PTY 403 D 1 HETATM 31 O O30 PTY . . . S 12 92.555 115.59 111.997 1 88.21 ? O30 PTY 403 D 1 HETATM 32 C C32 PTY . . . S 12 93.571 117.349 109.274 1 79.6 ? C32 PTY 403 D 1 HETATM 33 C C33 PTY . . . S 12 93.137 117.479 107.823 1 80.32 ? C33 PTY 403 D 1 HETATM 34 C C34 PTY . . . S 12 94.255 117.946 106.903 1 81.15 ? C34 PTY 403 D 1 HETATM 35 C C35 PTY . . . S 12 93.697 118.132 105.497 1 81.17 ? C35 PTY 403 D 1 HETATM 36 C C36 PTY . . . S 12 94.778 118.531 104.505 1 80.97 ? C36 PTY 403 D 1 HETATM 37 C C37 PTY . . . S 12 94.239 118.531 103.082 1 79.77 ? C37 PTY 403 D 1 HETATM 38 C C38 PTY . . . S 12 95.332 118.961 102.117 1 79.51 ? C38 PTY 403 D 1 HETATM 39 C C39 PTY . . . S 12 95.805 120.36 102.478 1 80.69 ? C39 PTY 403 D 1 HETATM 40 C C40 PTY . . . S 12 96.866 120.863 101.512 1 80.42 ? C40 PTY 403 D 1 HETATM 41 C C41 PTY . . . S 12 97.149 122.338 101.754 1 79.19 ? C41 PTY 403 D 1 HETATM 42 C C42 PTY . . . S 12 97.852 122.546 103.085 1 80.91 ? C42 PTY 403 D 1 HETATM 43 C C43 PTY . . . S 12 99.329 122.228 102.947 1 80.88 ? C43 PTY 403 D 1 HETATM 44 C C44 PTY . . . S 12 99.966 123.18 101.962 1 80.86 ? C44 PTY 403 D 1 HETATM 45 P P1 PTY . . . S 12 93.238 115.951 117.479 1 97.23 ? P1 PTY 403 D 1 HETATM 46 O O11 PTY . . . S 12 92.369 116.516 118.705 1 85.71 ? O11 PTY 403 D 1 HETATM 47 O O12 PTY . . . S 12 94.624 115.64 117.982 1 84.73 ? O12 PTY 403 D 1 HETATM 48 O O13 PTY . . . S 12 92.42 114.895 116.781 1 88.2 ? O13 PTY 403 D 1 HETATM 49 O O14 PTY . . . S 12 93.317 117.219 116.498 1 83.02 ? O14 PTY 403 D 1 HETATM 50 N N1 PTY . . . S 12 90.988 116.555 121.133 1 80.58 ? N1 PTY 403 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 50 #