data_8RBU # _model_server_result.job_id gy7jbBsH3oiV_JiajY82Ew _model_server_result.datetime_utc '2024-11-24 10:26:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 8RBU # _exptl.entry_id 8RBU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8RBU _cell.length_a 86.992 _cell.length_b 86.992 _cell.length_c 107.183 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall 'P 3 2"' _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 125 A CYS 101 1_555 A SG CYS 188 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 227 A CYS 203 1_555 A SG CYS 283 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 246 n n C1 C2 PEG sing 247 n n C1 H11 PEG sing 248 n n C1 H12 PEG sing 249 n n O1 HO1 PEG sing 250 n n C2 O2 PEG sing 251 n n C2 H21 PEG sing 252 n n C2 H22 PEG sing 253 n n O2 C3 PEG sing 254 n n C3 C4 PEG sing 255 n n C3 H31 PEG sing 256 n n C3 H32 PEG sing 257 n n C4 O4 PEG sing 258 n n C4 H41 PEG sing 259 n n C4 H42 PEG sing 260 n n O4 HO4 PEG sing 261 n n # _atom_sites.entry_id 8RBU _atom_sites.fract_transf_matrix[1][1] 0.011495 _atom_sites.fract_transf_matrix[1][2] 0.006637 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013274 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PEG A 1 401 301 PEG PEG . E 5 EDO A 1 402 302 EDO EDO . F 5 EDO A 1 403 303 EDO EDO . G 5 EDO A 1 404 304 EDO EDO . H 5 EDO A 1 405 305 EDO EDO . I 5 EDO A 1 406 306 EDO EDO . J 5 EDO A 1 407 101 EDO EDO . K 6 CL A 1 408 2 CL CL . L 7 SO4 A 1 409 1 SO4 SO4 . M 7 SO4 A 1 410 2 SO4 SO4 . N 8 NA A 1 411 2 NA NA . O 5 EDO B 1 101 101 EDO EDO . P 5 EDO B 1 102 102 EDO EDO . Q 6 CL B 1 103 1 CL CL . R 8 NA B 1 104 1 NA NA . S 9 HOH A 1 501 12 HOH HOH . S 9 HOH A 2 502 425 HOH HOH . S 9 HOH A 3 503 424 HOH HOH . S 9 HOH A 4 504 408 HOH HOH . S 9 HOH A 5 505 14 HOH HOH . S 9 HOH A 6 506 427 HOH HOH . S 9 HOH A 7 507 13 HOH HOH . S 9 HOH A 8 508 426 HOH HOH . S 9 HOH A 9 509 9 HOH HOH . S 9 HOH A 10 510 129 HOH HOH . S 9 HOH A 11 511 275 HOH HOH . S 9 HOH A 12 512 208 HOH HOH . S 9 HOH A 13 513 423 HOH HOH . S 9 HOH A 14 514 278 HOH HOH . S 9 HOH A 15 515 261 HOH HOH . T 9 HOH B 1 201 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . D 4 -39.966 14.089 15.585 1 35.69 ? C1 PEG 401 A 1 HETATM 2 O O1 PEG . . . D 4 -40.757 15.19 15.973 1 45.14 ? O1 PEG 401 A 1 HETATM 3 C C2 PEG . . . D 4 -40.001 13.038 16.665 1 42.03 ? C2 PEG 401 A 1 HETATM 4 O O2 PEG . . . D 4 -38.931 12.14 16.506 1 55.26 ? O2 PEG 401 A 1 HETATM 5 C C3 PEG . . . D 4 -38.967 11.087 17.438 1 44.29 ? C3 PEG 401 A 1 HETATM 6 C C4 PEG . . . D 4 -37.719 10.246 17.34 1 51.79 ? C4 PEG 401 A 1 HETATM 7 O O4 PEG . . . D 4 -37.222 9.984 18.633 1 47.64 ? O4 PEG 401 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 7 #