data_8RBV
#
_model_server_result.job_id            yaU_gF5y4ZcjnNTV7RsL9g 
_model_server_result.datetime_utc      '2024-11-24 04:42:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rbv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":102}' 
#
_entry.id    8RBV 
#
_exptl.entry_id    8RBV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RBV 
_cell.length_a            59.821 
_cell.length_b            78.177 
_cell.length_c            110.911 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RBV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 125 A CYS 101 1_555 A SG CYS 188 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf2 A SG CYS 227 A CYS 203 1_555 A SG CYS 283 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc1 A NE2 HIS 169 A HIS 145 1_555 G CD CD . A CD 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
metalc ? metalc2 A ND1 HIS 175 A HIS 151 1_555 F CD CD . A CD 403 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
metalc ? metalc3 A OE1 GLU 178 A GLU 154 1_555 F CD CD . A CD 403 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc4 A OE2 GLU 178 A GLU 154 1_555 F CD CD . A CD 403 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc5 A O HIS 215 A HIS 191 1_555 F CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
metalc ? metalc6 A ND1 HIS 215 A HIS 191 1_555 F CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc7 A NE2 HIS 221 A HIS 197 1_555 G CD CD . A CD 404 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? 
metalc ? metalc8 A OE2 GLU 222 A GLU 198 1_555 G CD CD . A CD 404 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 89 n n 
C1 C2 EDO sing 90 n n 
C1 H11 EDO sing 91 n n 
C1 H12 EDO sing 92 n n 
O1 HO1 EDO sing 93 n n 
C2 O2 EDO sing 94 n n 
C2 H21 EDO sing 95 n n 
C2 H22 EDO sing 96 n n 
O2 HO2 EDO sing 97 n n 
#
_atom_sites.entry_id                     8RBV 
_atom_sites.fract_transf_matrix[1][1]    0.016717 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012791 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009016 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ACT A 1 401 3 ACT ACT . 
E 5 EDO A 1 402 4 EDO EDO . 
F 6 CD A 1 403 1 CD CD . 
G 6 CD A 1 404 2 CD CD . 
H 4 ACT B 1 101 5 ACT ACT . 
I 5 EDO B 1 102 6 EDO EDO . 
J 7 PEG B 1 103 7 PEG PEG . 
K 8 HOH A 1 501 171 HOH HOH . 
K 8 HOH A 2 502 40 HOH HOH . 
K 8 HOH A 3 503 230 HOH HOH . 
K 8 HOH A 4 504 91 HOH HOH . 
K 8 HOH A 5 505 37 HOH HOH . 
K 8 HOH A 6 506 93 HOH HOH . 
K 8 HOH A 7 507 208 HOH HOH . 
K 8 HOH A 8 508 126 HOH HOH . 
K 8 HOH A 9 509 210 HOH HOH . 
K 8 HOH A 10 510 29 HOH HOH . 
K 8 HOH A 11 511 97 HOH HOH . 
K 8 HOH A 12 512 48 HOH HOH . 
K 8 HOH A 13 513 231 HOH HOH . 
K 8 HOH A 14 514 71 HOH HOH . 
K 8 HOH A 15 515 10 HOH HOH . 
K 8 HOH A 16 516 170 HOH HOH . 
K 8 HOH A 17 517 53 HOH HOH . 
K 8 HOH A 18 518 1 HOH HOH . 
K 8 HOH A 19 519 61 HOH HOH . 
K 8 HOH A 20 520 177 HOH HOH . 
K 8 HOH A 21 521 129 HOH HOH . 
K 8 HOH A 22 522 51 HOH HOH . 
K 8 HOH A 23 523 24 HOH HOH . 
K 8 HOH A 24 524 115 HOH HOH . 
K 8 HOH A 25 525 26 HOH HOH . 
K 8 HOH A 26 526 7 HOH HOH . 
K 8 HOH A 27 527 166 HOH HOH . 
K 8 HOH A 28 528 87 HOH HOH . 
K 8 HOH A 29 529 2 HOH HOH . 
K 8 HOH A 30 530 160 HOH HOH . 
K 8 HOH A 31 531 117 HOH HOH . 
K 8 HOH A 32 532 59 HOH HOH . 
K 8 HOH A 33 533 69 HOH HOH . 
K 8 HOH A 34 534 80 HOH HOH . 
K 8 HOH A 35 535 52 HOH HOH . 
K 8 HOH A 36 536 85 HOH HOH . 
K 8 HOH A 37 537 169 HOH HOH . 
K 8 HOH A 38 538 30 HOH HOH . 
K 8 HOH A 39 539 207 HOH HOH . 
K 8 HOH A 40 540 76 HOH HOH . 
K 8 HOH A 41 541 31 HOH HOH . 
K 8 HOH A 42 542 122 HOH HOH . 
K 8 HOH A 43 543 5 HOH HOH . 
K 8 HOH A 44 544 38 HOH HOH . 
K 8 HOH A 45 545 83 HOH HOH . 
K 8 HOH A 46 546 49 HOH HOH . 
K 8 HOH A 47 547 153 HOH HOH . 
K 8 HOH A 48 548 9 HOH HOH . 
K 8 HOH A 49 549 220 HOH HOH . 
K 8 HOH A 50 550 140 HOH HOH . 
K 8 HOH A 51 551 162 HOH HOH . 
K 8 HOH A 52 552 58 HOH HOH . 
K 8 HOH A 53 553 164 HOH HOH . 
K 8 HOH A 54 554 199 HOH HOH . 
K 8 HOH A 55 555 101 HOH HOH . 
K 8 HOH A 56 556 191 HOH HOH . 
K 8 HOH A 57 557 81 HOH HOH . 
K 8 HOH A 58 558 84 HOH HOH . 
K 8 HOH A 59 559 181 HOH HOH . 
K 8 HOH A 60 560 4 HOH HOH . 
K 8 HOH A 61 561 175 HOH HOH . 
K 8 HOH A 62 562 206 HOH HOH . 
K 8 HOH A 63 563 217 HOH HOH . 
K 8 HOH A 64 564 62 HOH HOH . 
K 8 HOH A 65 565 179 HOH HOH . 
K 8 HOH A 66 566 41 HOH HOH . 
K 8 HOH A 67 567 159 HOH HOH . 
K 8 HOH A 68 568 146 HOH HOH . 
K 8 HOH A 69 569 218 HOH HOH . 
K 8 HOH A 70 570 43 HOH HOH . 
K 8 HOH A 71 571 143 HOH HOH . 
K 8 HOH A 72 572 174 HOH HOH . 
K 8 HOH A 73 573 82 HOH HOH . 
K 8 HOH A 74 574 67 HOH HOH . 
K 8 HOH A 75 575 94 HOH HOH . 
K 8 HOH A 76 576 134 HOH HOH . 
K 8 HOH A 77 577 55 HOH HOH . 
K 8 HOH A 78 578 124 HOH HOH . 
K 8 HOH A 79 579 19 HOH HOH . 
K 8 HOH A 80 580 16 HOH HOH . 
K 8 HOH A 81 581 144 HOH HOH . 
K 8 HOH A 82 582 103 HOH HOH . 
K 8 HOH A 83 583 3 HOH HOH . 
K 8 HOH A 84 584 128 HOH HOH . 
K 8 HOH A 85 585 233 HOH HOH . 
K 8 HOH A 86 586 72 HOH HOH . 
K 8 HOH A 87 587 18 HOH HOH . 
K 8 HOH A 88 588 68 HOH HOH . 
K 8 HOH A 89 589 22 HOH HOH . 
K 8 HOH A 90 590 201 HOH HOH . 
K 8 HOH A 91 591 20 HOH HOH . 
K 8 HOH A 92 592 44 HOH HOH . 
K 8 HOH A 93 593 34 HOH HOH . 
K 8 HOH A 94 594 157 HOH HOH . 
K 8 HOH A 95 595 132 HOH HOH . 
K 8 HOH A 96 596 112 HOH HOH . 
K 8 HOH A 97 597 135 HOH HOH . 
K 8 HOH A 98 598 13 HOH HOH . 
K 8 HOH A 99 599 141 HOH HOH . 
K 8 HOH A 100 600 167 HOH HOH . 
K 8 HOH A 101 601 120 HOH HOH . 
K 8 HOH A 102 602 36 HOH HOH . 
K 8 HOH A 103 603 21 HOH HOH . 
K 8 HOH A 104 604 106 HOH HOH . 
K 8 HOH A 105 605 185 HOH HOH . 
K 8 HOH A 106 606 137 HOH HOH . 
K 8 HOH A 107 607 105 HOH HOH . 
K 8 HOH A 108 608 211 HOH HOH . 
K 8 HOH A 109 609 6 HOH HOH . 
K 8 HOH A 110 610 183 HOH HOH . 
K 8 HOH A 111 611 79 HOH HOH . 
K 8 HOH A 112 612 114 HOH HOH . 
K 8 HOH A 113 613 209 HOH HOH . 
K 8 HOH A 114 614 133 HOH HOH . 
K 8 HOH A 115 615 35 HOH HOH . 
K 8 HOH A 116 616 118 HOH HOH . 
K 8 HOH A 117 617 180 HOH HOH . 
K 8 HOH A 118 618 130 HOH HOH . 
K 8 HOH A 119 619 147 HOH HOH . 
K 8 HOH A 120 620 32 HOH HOH . 
K 8 HOH A 121 621 228 HOH HOH . 
K 8 HOH A 122 622 165 HOH HOH . 
K 8 HOH A 123 623 89 HOH HOH . 
K 8 HOH A 124 624 74 HOH HOH . 
K 8 HOH A 125 625 149 HOH HOH . 
K 8 HOH A 126 626 192 HOH HOH . 
K 8 HOH A 127 627 8 HOH HOH . 
K 8 HOH A 128 628 221 HOH HOH . 
K 8 HOH A 129 629 113 HOH HOH . 
K 8 HOH A 130 630 15 HOH HOH . 
K 8 HOH A 131 631 123 HOH HOH . 
K 8 HOH A 132 632 42 HOH HOH . 
K 8 HOH A 133 633 222 HOH HOH . 
K 8 HOH A 134 634 190 HOH HOH . 
K 8 HOH A 135 635 150 HOH HOH . 
K 8 HOH A 136 636 23 HOH HOH . 
K 8 HOH A 137 637 202 HOH HOH . 
K 8 HOH A 138 638 195 HOH HOH . 
K 8 HOH A 139 639 25 HOH HOH . 
K 8 HOH A 140 640 193 HOH HOH . 
K 8 HOH A 141 641 194 HOH HOH . 
K 8 HOH A 142 642 223 HOH HOH . 
K 8 HOH A 143 643 182 HOH HOH . 
K 8 HOH A 144 644 186 HOH HOH . 
K 8 HOH A 145 645 73 HOH HOH . 
K 8 HOH A 146 646 161 HOH HOH . 
K 8 HOH A 147 647 109 HOH HOH . 
K 8 HOH A 148 648 176 HOH HOH . 
K 8 HOH A 149 649 200 HOH HOH . 
K 8 HOH A 150 650 187 HOH HOH . 
K 8 HOH A 151 651 197 HOH HOH . 
K 8 HOH A 152 652 229 HOH HOH . 
K 8 HOH A 153 653 138 HOH HOH . 
K 8 HOH A 154 654 50 HOH HOH . 
K 8 HOH A 155 655 116 HOH HOH . 
K 8 HOH A 156 656 66 HOH HOH . 
K 8 HOH A 157 657 155 HOH HOH . 
K 8 HOH A 158 658 196 HOH HOH . 
L 8 HOH B 1 201 46 HOH HOH . 
L 8 HOH B 2 202 136 HOH HOH . 
L 8 HOH B 3 203 205 HOH HOH . 
L 8 HOH B 4 204 65 HOH HOH . 
L 8 HOH B 5 205 86 HOH HOH . 
L 8 HOH B 6 206 33 HOH HOH . 
L 8 HOH B 7 207 60 HOH HOH . 
L 8 HOH B 8 208 151 HOH HOH . 
L 8 HOH B 9 209 70 HOH HOH . 
L 8 HOH B 10 210 56 HOH HOH . 
L 8 HOH B 11 211 64 HOH HOH . 
L 8 HOH B 12 212 11 HOH HOH . 
L 8 HOH B 13 213 107 HOH HOH . 
L 8 HOH B 14 214 121 HOH HOH . 
L 8 HOH B 15 215 108 HOH HOH . 
L 8 HOH B 16 216 12 HOH HOH . 
L 8 HOH B 17 217 156 HOH HOH . 
L 8 HOH B 18 218 168 HOH HOH . 
L 8 HOH B 19 219 152 HOH HOH . 
L 8 HOH B 20 220 111 HOH HOH . 
L 8 HOH B 21 221 47 HOH HOH . 
L 8 HOH B 22 222 198 HOH HOH . 
L 8 HOH B 23 223 214 HOH HOH . 
L 8 HOH B 24 224 158 HOH HOH . 
L 8 HOH B 25 225 90 HOH HOH . 
L 8 HOH B 26 226 188 HOH HOH . 
L 8 HOH B 27 227 102 HOH HOH . 
L 8 HOH B 28 228 57 HOH HOH . 
L 8 HOH B 29 229 54 HOH HOH . 
L 8 HOH B 30 230 154 HOH HOH . 
L 8 HOH B 31 231 17 HOH HOH . 
L 8 HOH B 32 232 203 HOH HOH . 
L 8 HOH B 33 233 142 HOH HOH . 
L 8 HOH B 34 234 28 HOH HOH . 
L 8 HOH B 35 235 110 HOH HOH . 
L 8 HOH B 36 236 127 HOH HOH . 
L 8 HOH B 37 237 14 HOH HOH . 
L 8 HOH B 38 238 75 HOH HOH . 
L 8 HOH B 39 239 212 HOH HOH . 
L 8 HOH B 40 240 27 HOH HOH . 
L 8 HOH B 41 241 95 HOH HOH . 
L 8 HOH B 42 242 104 HOH HOH . 
L 8 HOH B 43 243 172 HOH HOH . 
L 8 HOH B 44 244 45 HOH HOH . 
L 8 HOH B 45 245 163 HOH HOH . 
L 8 HOH B 46 246 184 HOH HOH . 
L 8 HOH B 47 247 125 HOH HOH . 
L 8 HOH B 48 248 78 HOH HOH . 
L 8 HOH B 49 249 131 HOH HOH . 
L 8 HOH B 50 250 215 HOH HOH . 
L 8 HOH B 51 251 119 HOH HOH . 
L 8 HOH B 52 252 148 HOH HOH . 
L 8 HOH B 53 253 96 HOH HOH . 
L 8 HOH B 54 254 232 HOH HOH . 
L 8 HOH B 55 255 98 HOH HOH . 
L 8 HOH B 56 256 145 HOH HOH . 
L 8 HOH B 57 257 204 HOH HOH . 
L 8 HOH B 58 258 178 HOH HOH . 
M 8 HOH C 1 101 139 HOH HOH . 
M 8 HOH C 2 102 189 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 5 -13.175 1.649 11.16 1 37.38 ? C1 EDO 102 B 1 
HETATM 2 O O1 EDO . . . I 5 -12.888 2.894 11.764 1 31.64 ? O1 EDO 102 B 1 
HETATM 3 C C2 EDO . . . I 5 -14.623 1.223 11.135 1 35.51 ? C2 EDO 102 B 1 
HETATM 4 O O2 EDO . . . I 5 -15.471 2.153 10.502 1 65.39 ? O2 EDO 102 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#