data_8RBV # _model_server_result.job_id 3SRukyljCtLOG7dIhdBlug _model_server_result.datetime_utc '2024-11-27 22:21:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rbv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":103}' # _entry.id 8RBV # _exptl.entry_id 8RBV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RBV _cell.length_a 59.821 _cell.length_b 78.177 _cell.length_c 110.911 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RBV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 125 A CYS 101 1_555 A SG CYS 188 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf2 A SG CYS 227 A CYS 203 1_555 A SG CYS 283 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 A NE2 HIS 169 A HIS 145 1_555 G CD CD . A CD 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc2 A ND1 HIS 175 A HIS 151 1_555 F CD CD . A CD 403 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc3 A OE1 GLU 178 A GLU 154 1_555 F CD CD . A CD 403 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc4 A OE2 GLU 178 A GLU 154 1_555 F CD CD . A CD 403 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc5 A O HIS 215 A HIS 191 1_555 F CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc6 A ND1 HIS 215 A HIS 191 1_555 F CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc7 A NE2 HIS 221 A HIS 197 1_555 G CD CD . A CD 404 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc8 A OE2 GLU 222 A GLU 198 1_555 G CD CD . A CD 404 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 252 n n C1 C2 PEG sing 253 n n C1 H11 PEG sing 254 n n C1 H12 PEG sing 255 n n O1 HO1 PEG sing 256 n n C2 O2 PEG sing 257 n n C2 H21 PEG sing 258 n n C2 H22 PEG sing 259 n n O2 C3 PEG sing 260 n n C3 C4 PEG sing 261 n n C3 H31 PEG sing 262 n n C3 H32 PEG sing 263 n n C4 O4 PEG sing 264 n n C4 H41 PEG sing 265 n n C4 H42 PEG sing 266 n n O4 HO4 PEG sing 267 n n # _atom_sites.entry_id 8RBV _atom_sites.fract_transf_matrix[1][1] 0.016717 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012791 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ACT A 1 401 3 ACT ACT . E 5 EDO A 1 402 4 EDO EDO . F 6 CD A 1 403 1 CD CD . G 6 CD A 1 404 2 CD CD . H 4 ACT B 1 101 5 ACT ACT . I 5 EDO B 1 102 6 EDO EDO . J 7 PEG B 1 103 7 PEG PEG . K 8 HOH A 1 501 171 HOH HOH . K 8 HOH A 2 502 40 HOH HOH . K 8 HOH A 3 503 230 HOH HOH . K 8 HOH A 4 504 91 HOH HOH . K 8 HOH A 5 505 37 HOH HOH . K 8 HOH A 6 506 93 HOH HOH . K 8 HOH A 7 507 208 HOH HOH . K 8 HOH A 8 508 126 HOH HOH . K 8 HOH A 9 509 210 HOH HOH . K 8 HOH A 10 510 29 HOH HOH . K 8 HOH A 11 511 97 HOH HOH . K 8 HOH A 12 512 48 HOH HOH . K 8 HOH A 13 513 231 HOH HOH . K 8 HOH A 14 514 71 HOH HOH . K 8 HOH A 15 515 10 HOH HOH . K 8 HOH A 16 516 170 HOH HOH . K 8 HOH A 17 517 53 HOH HOH . K 8 HOH A 18 518 1 HOH HOH . K 8 HOH A 19 519 61 HOH HOH . K 8 HOH A 20 520 177 HOH HOH . K 8 HOH A 21 521 129 HOH HOH . K 8 HOH A 22 522 51 HOH HOH . K 8 HOH A 23 523 24 HOH HOH . K 8 HOH A 24 524 115 HOH HOH . K 8 HOH A 25 525 26 HOH HOH . K 8 HOH A 26 526 7 HOH HOH . K 8 HOH A 27 527 166 HOH HOH . K 8 HOH A 28 528 87 HOH HOH . K 8 HOH A 29 529 2 HOH HOH . K 8 HOH A 30 530 160 HOH HOH . K 8 HOH A 31 531 117 HOH HOH . K 8 HOH A 32 532 59 HOH HOH . K 8 HOH A 33 533 69 HOH HOH . K 8 HOH A 34 534 80 HOH HOH . K 8 HOH A 35 535 52 HOH HOH . K 8 HOH A 36 536 85 HOH HOH . K 8 HOH A 37 537 169 HOH HOH . K 8 HOH A 38 538 30 HOH HOH . K 8 HOH A 39 539 207 HOH HOH . K 8 HOH A 40 540 76 HOH HOH . K 8 HOH A 41 541 31 HOH HOH . K 8 HOH A 42 542 122 HOH HOH . K 8 HOH A 43 543 5 HOH HOH . K 8 HOH A 44 544 38 HOH HOH . K 8 HOH A 45 545 83 HOH HOH . K 8 HOH A 46 546 49 HOH HOH . K 8 HOH A 47 547 153 HOH HOH . K 8 HOH A 48 548 9 HOH HOH . K 8 HOH A 49 549 220 HOH HOH . K 8 HOH A 50 550 140 HOH HOH . K 8 HOH A 51 551 162 HOH HOH . K 8 HOH A 52 552 58 HOH HOH . K 8 HOH A 53 553 164 HOH HOH . K 8 HOH A 54 554 199 HOH HOH . K 8 HOH A 55 555 101 HOH HOH . K 8 HOH A 56 556 191 HOH HOH . K 8 HOH A 57 557 81 HOH HOH . K 8 HOH A 58 558 84 HOH HOH . K 8 HOH A 59 559 181 HOH HOH . K 8 HOH A 60 560 4 HOH HOH . K 8 HOH A 61 561 175 HOH HOH . K 8 HOH A 62 562 206 HOH HOH . K 8 HOH A 63 563 217 HOH HOH . K 8 HOH A 64 564 62 HOH HOH . K 8 HOH A 65 565 179 HOH HOH . K 8 HOH A 66 566 41 HOH HOH . K 8 HOH A 67 567 159 HOH HOH . K 8 HOH A 68 568 146 HOH HOH . K 8 HOH A 69 569 218 HOH HOH . K 8 HOH A 70 570 43 HOH HOH . K 8 HOH A 71 571 143 HOH HOH . K 8 HOH A 72 572 174 HOH HOH . K 8 HOH A 73 573 82 HOH HOH . K 8 HOH A 74 574 67 HOH HOH . K 8 HOH A 75 575 94 HOH HOH . K 8 HOH A 76 576 134 HOH HOH . K 8 HOH A 77 577 55 HOH HOH . K 8 HOH A 78 578 124 HOH HOH . K 8 HOH A 79 579 19 HOH HOH . K 8 HOH A 80 580 16 HOH HOH . K 8 HOH A 81 581 144 HOH HOH . K 8 HOH A 82 582 103 HOH HOH . K 8 HOH A 83 583 3 HOH HOH . K 8 HOH A 84 584 128 HOH HOH . K 8 HOH A 85 585 233 HOH HOH . K 8 HOH A 86 586 72 HOH HOH . K 8 HOH A 87 587 18 HOH HOH . K 8 HOH A 88 588 68 HOH HOH . K 8 HOH A 89 589 22 HOH HOH . K 8 HOH A 90 590 201 HOH HOH . K 8 HOH A 91 591 20 HOH HOH . K 8 HOH A 92 592 44 HOH HOH . K 8 HOH A 93 593 34 HOH HOH . K 8 HOH A 94 594 157 HOH HOH . K 8 HOH A 95 595 132 HOH HOH . K 8 HOH A 96 596 112 HOH HOH . K 8 HOH A 97 597 135 HOH HOH . K 8 HOH A 98 598 13 HOH HOH . K 8 HOH A 99 599 141 HOH HOH . K 8 HOH A 100 600 167 HOH HOH . K 8 HOH A 101 601 120 HOH HOH . K 8 HOH A 102 602 36 HOH HOH . K 8 HOH A 103 603 21 HOH HOH . K 8 HOH A 104 604 106 HOH HOH . K 8 HOH A 105 605 185 HOH HOH . K 8 HOH A 106 606 137 HOH HOH . K 8 HOH A 107 607 105 HOH HOH . K 8 HOH A 108 608 211 HOH HOH . K 8 HOH A 109 609 6 HOH HOH . K 8 HOH A 110 610 183 HOH HOH . K 8 HOH A 111 611 79 HOH HOH . K 8 HOH A 112 612 114 HOH HOH . K 8 HOH A 113 613 209 HOH HOH . K 8 HOH A 114 614 133 HOH HOH . K 8 HOH A 115 615 35 HOH HOH . K 8 HOH A 116 616 118 HOH HOH . K 8 HOH A 117 617 180 HOH HOH . K 8 HOH A 118 618 130 HOH HOH . K 8 HOH A 119 619 147 HOH HOH . K 8 HOH A 120 620 32 HOH HOH . K 8 HOH A 121 621 228 HOH HOH . K 8 HOH A 122 622 165 HOH HOH . K 8 HOH A 123 623 89 HOH HOH . K 8 HOH A 124 624 74 HOH HOH . K 8 HOH A 125 625 149 HOH HOH . K 8 HOH A 126 626 192 HOH HOH . K 8 HOH A 127 627 8 HOH HOH . K 8 HOH A 128 628 221 HOH HOH . K 8 HOH A 129 629 113 HOH HOH . K 8 HOH A 130 630 15 HOH HOH . K 8 HOH A 131 631 123 HOH HOH . K 8 HOH A 132 632 42 HOH HOH . K 8 HOH A 133 633 222 HOH HOH . K 8 HOH A 134 634 190 HOH HOH . K 8 HOH A 135 635 150 HOH HOH . K 8 HOH A 136 636 23 HOH HOH . K 8 HOH A 137 637 202 HOH HOH . K 8 HOH A 138 638 195 HOH HOH . K 8 HOH A 139 639 25 HOH HOH . K 8 HOH A 140 640 193 HOH HOH . K 8 HOH A 141 641 194 HOH HOH . K 8 HOH A 142 642 223 HOH HOH . K 8 HOH A 143 643 182 HOH HOH . K 8 HOH A 144 644 186 HOH HOH . K 8 HOH A 145 645 73 HOH HOH . K 8 HOH A 146 646 161 HOH HOH . K 8 HOH A 147 647 109 HOH HOH . K 8 HOH A 148 648 176 HOH HOH . K 8 HOH A 149 649 200 HOH HOH . K 8 HOH A 150 650 187 HOH HOH . K 8 HOH A 151 651 197 HOH HOH . K 8 HOH A 152 652 229 HOH HOH . K 8 HOH A 153 653 138 HOH HOH . K 8 HOH A 154 654 50 HOH HOH . K 8 HOH A 155 655 116 HOH HOH . K 8 HOH A 156 656 66 HOH HOH . K 8 HOH A 157 657 155 HOH HOH . K 8 HOH A 158 658 196 HOH HOH . L 8 HOH B 1 201 46 HOH HOH . L 8 HOH B 2 202 136 HOH HOH . L 8 HOH B 3 203 205 HOH HOH . L 8 HOH B 4 204 65 HOH HOH . L 8 HOH B 5 205 86 HOH HOH . L 8 HOH B 6 206 33 HOH HOH . L 8 HOH B 7 207 60 HOH HOH . L 8 HOH B 8 208 151 HOH HOH . L 8 HOH B 9 209 70 HOH HOH . L 8 HOH B 10 210 56 HOH HOH . L 8 HOH B 11 211 64 HOH HOH . L 8 HOH B 12 212 11 HOH HOH . L 8 HOH B 13 213 107 HOH HOH . L 8 HOH B 14 214 121 HOH HOH . L 8 HOH B 15 215 108 HOH HOH . L 8 HOH B 16 216 12 HOH HOH . L 8 HOH B 17 217 156 HOH HOH . L 8 HOH B 18 218 168 HOH HOH . L 8 HOH B 19 219 152 HOH HOH . L 8 HOH B 20 220 111 HOH HOH . L 8 HOH B 21 221 47 HOH HOH . L 8 HOH B 22 222 198 HOH HOH . L 8 HOH B 23 223 214 HOH HOH . L 8 HOH B 24 224 158 HOH HOH . L 8 HOH B 25 225 90 HOH HOH . L 8 HOH B 26 226 188 HOH HOH . L 8 HOH B 27 227 102 HOH HOH . L 8 HOH B 28 228 57 HOH HOH . L 8 HOH B 29 229 54 HOH HOH . L 8 HOH B 30 230 154 HOH HOH . L 8 HOH B 31 231 17 HOH HOH . L 8 HOH B 32 232 203 HOH HOH . L 8 HOH B 33 233 142 HOH HOH . L 8 HOH B 34 234 28 HOH HOH . L 8 HOH B 35 235 110 HOH HOH . L 8 HOH B 36 236 127 HOH HOH . L 8 HOH B 37 237 14 HOH HOH . L 8 HOH B 38 238 75 HOH HOH . L 8 HOH B 39 239 212 HOH HOH . L 8 HOH B 40 240 27 HOH HOH . L 8 HOH B 41 241 95 HOH HOH . L 8 HOH B 42 242 104 HOH HOH . L 8 HOH B 43 243 172 HOH HOH . L 8 HOH B 44 244 45 HOH HOH . L 8 HOH B 45 245 163 HOH HOH . L 8 HOH B 46 246 184 HOH HOH . L 8 HOH B 47 247 125 HOH HOH . L 8 HOH B 48 248 78 HOH HOH . L 8 HOH B 49 249 131 HOH HOH . L 8 HOH B 50 250 215 HOH HOH . L 8 HOH B 51 251 119 HOH HOH . L 8 HOH B 52 252 148 HOH HOH . L 8 HOH B 53 253 96 HOH HOH . L 8 HOH B 54 254 232 HOH HOH . L 8 HOH B 55 255 98 HOH HOH . L 8 HOH B 56 256 145 HOH HOH . L 8 HOH B 57 257 204 HOH HOH . L 8 HOH B 58 258 178 HOH HOH . M 8 HOH C 1 101 139 HOH HOH . M 8 HOH C 2 102 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . J 7 -14.131 -6.195 35.911 1 35.55 ? C1 PEG 103 B 1 HETATM 2 O O1 PEG . . . J 7 -13.92 -4.933 36.493 1 48.08 ? O1 PEG 103 B 1 HETATM 3 C C2 PEG . . . J 7 -15.126 -6.965 36.773 1 44.99 ? C2 PEG 103 B 1 HETATM 4 O O2 PEG . . . J 7 -14.888 -8.338 36.697 1 45.17 ? O2 PEG 103 B 1 HETATM 5 C C3 PEG . . . J 7 -15.975 -9.128 37.101 1 33.1 ? C3 PEG 103 B 1 HETATM 6 C C4 PEG . . . J 7 -16.365 -8.851 38.55 1 42.11 ? C4 PEG 103 B 1 HETATM 7 O O4 PEG . . . J 7 -17.641 -8.275 38.61 1 48.13 ? O4 PEG 103 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 7 #