data_8RBY # _model_server_result.job_id 9l7tp_52lQvrt56tPhXOag _model_server_result.datetime_utc '2025-04-03 04:45:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rby # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 8RBY # _exptl.entry_id 8RBY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 209.263 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3[N-MORPHOLINO]PROPANE SULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.31 _cell.angle_gamma 90 _cell.entry_id 8RBY _cell.length_a 44.481 _cell.length_b 55.915 _cell.length_c 58.774 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RBY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 336 1_555 A SG CYS 32 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 50 A CYS 379 1_555 A SG CYS 103 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 62 A CYS 391 1_555 A SG CYS 196 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf4 A SG CYS 151 A CYS 480 1_555 A SG CYS 159 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 B SG CYS 33 B CYS 33 1_555 B SG CYS 99 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? covale ? covale1 A ND2 ASN 14 A ASN 343 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C7 H15 N O4 S' _chem_comp.formula_weight 209.263 _chem_comp.id MPO _chem_comp.mon_nstd_flag . _chem_comp.name '3[N-MORPHOLINO]PROPANE SULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 O1 MPO doub 237 n n S1 O2 MPO doub 238 n n S1 C1 MPO sing 239 n n S1 O3 MPO sing 240 n n O4 C5 MPO sing 241 n n O4 C6 MPO sing 242 n n N1 C3 MPO sing 243 n n N1 C4 MPO sing 244 n n N1 C7 MPO sing 245 n n C1 C2 MPO sing 246 n n C1 H11 MPO sing 247 n n C1 H12 MPO sing 248 n n O3 HO3 MPO sing 249 n n C2 C3 MPO sing 250 n n C2 H21 MPO sing 251 n n C2 H22 MPO sing 252 n n C3 H31 MPO sing 253 n n C3 H32 MPO sing 254 n n C4 C5 MPO sing 255 n n C4 H41 MPO sing 256 n n C4 H42 MPO sing 257 n n C5 H51 MPO sing 258 n n C5 H52 MPO sing 259 n n C6 C7 MPO sing 260 n n C6 H61 MPO sing 261 n n C6 H62 MPO sing 262 n n C7 H71 MPO sing 263 n n C7 H72 MPO sing 264 n n # _atom_sites.entry_id 8RBY _atom_sites.fract_transf_matrix[1][1] 0.022482 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005735 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017884 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 601 3430 NAG NAG . D 4 MPO A 1 602 1 MPO MPO . E 5 HOH A 1 701 86 HOH HOH . E 5 HOH A 2 702 102 HOH HOH . E 5 HOH A 3 703 142 HOH HOH . E 5 HOH A 4 704 189 HOH HOH . E 5 HOH A 5 705 181 HOH HOH . E 5 HOH A 6 706 15 HOH HOH . E 5 HOH A 7 707 165 HOH HOH . E 5 HOH A 8 708 53 HOH HOH . E 5 HOH A 9 709 6 HOH HOH . E 5 HOH A 10 710 117 HOH HOH . E 5 HOH A 11 711 77 HOH HOH . E 5 HOH A 12 712 147 HOH HOH . E 5 HOH A 13 713 92 HOH HOH . E 5 HOH A 14 714 44 HOH HOH . E 5 HOH A 15 715 141 HOH HOH . E 5 HOH A 16 716 171 HOH HOH . E 5 HOH A 17 717 132 HOH HOH . E 5 HOH A 18 718 122 HOH HOH . E 5 HOH A 19 719 19 HOH HOH . E 5 HOH A 20 720 38 HOH HOH . E 5 HOH A 21 721 211 HOH HOH . E 5 HOH A 22 722 37 HOH HOH . E 5 HOH A 23 723 114 HOH HOH . E 5 HOH A 24 724 16 HOH HOH . E 5 HOH A 25 725 84 HOH HOH . E 5 HOH A 26 726 52 HOH HOH . E 5 HOH A 27 727 4 HOH HOH . E 5 HOH A 28 728 58 HOH HOH . E 5 HOH A 29 729 112 HOH HOH . E 5 HOH A 30 730 104 HOH HOH . E 5 HOH A 31 731 199 HOH HOH . E 5 HOH A 32 732 210 HOH HOH . E 5 HOH A 33 733 3 HOH HOH . E 5 HOH A 34 734 71 HOH HOH . E 5 HOH A 35 735 168 HOH HOH . E 5 HOH A 36 736 9 HOH HOH . E 5 HOH A 37 737 39 HOH HOH . E 5 HOH A 38 738 93 HOH HOH . E 5 HOH A 39 739 42 HOH HOH . E 5 HOH A 40 740 89 HOH HOH . E 5 HOH A 41 741 59 HOH HOH . E 5 HOH A 42 742 191 HOH HOH . E 5 HOH A 43 743 116 HOH HOH . E 5 HOH A 44 744 223 HOH HOH . E 5 HOH A 45 745 107 HOH HOH . E 5 HOH A 46 746 69 HOH HOH . E 5 HOH A 47 747 7 HOH HOH . E 5 HOH A 48 748 88 HOH HOH . E 5 HOH A 49 749 179 HOH HOH . E 5 HOH A 50 750 29 HOH HOH . E 5 HOH A 51 751 65 HOH HOH . E 5 HOH A 52 752 18 HOH HOH . E 5 HOH A 53 753 13 HOH HOH . E 5 HOH A 54 754 34 HOH HOH . E 5 HOH A 55 755 99 HOH HOH . E 5 HOH A 56 756 108 HOH HOH . E 5 HOH A 57 757 40 HOH HOH . E 5 HOH A 58 758 158 HOH HOH . E 5 HOH A 59 759 218 HOH HOH . E 5 HOH A 60 760 206 HOH HOH . E 5 HOH A 61 761 173 HOH HOH . E 5 HOH A 62 762 17 HOH HOH . E 5 HOH A 63 763 195 HOH HOH . E 5 HOH A 64 764 85 HOH HOH . E 5 HOH A 65 765 82 HOH HOH . E 5 HOH A 66 766 41 HOH HOH . E 5 HOH A 67 767 32 HOH HOH . E 5 HOH A 68 768 49 HOH HOH . E 5 HOH A 69 769 83 HOH HOH . E 5 HOH A 70 770 28 HOH HOH . E 5 HOH A 71 771 11 HOH HOH . E 5 HOH A 72 772 136 HOH HOH . E 5 HOH A 73 773 153 HOH HOH . E 5 HOH A 74 774 148 HOH HOH . E 5 HOH A 75 775 126 HOH HOH . E 5 HOH A 76 776 146 HOH HOH . E 5 HOH A 77 777 190 HOH HOH . E 5 HOH A 78 778 64 HOH HOH . E 5 HOH A 79 779 47 HOH HOH . E 5 HOH A 80 780 63 HOH HOH . E 5 HOH A 81 781 33 HOH HOH . E 5 HOH A 82 782 75 HOH HOH . E 5 HOH A 83 783 27 HOH HOH . E 5 HOH A 84 784 154 HOH HOH . E 5 HOH A 85 785 156 HOH HOH . E 5 HOH A 86 786 212 HOH HOH . E 5 HOH A 87 787 10 HOH HOH . E 5 HOH A 88 788 215 HOH HOH . E 5 HOH A 89 789 36 HOH HOH . E 5 HOH A 90 790 150 HOH HOH . E 5 HOH A 91 791 50 HOH HOH . E 5 HOH A 92 792 57 HOH HOH . E 5 HOH A 93 793 140 HOH HOH . E 5 HOH A 94 794 184 HOH HOH . E 5 HOH A 95 795 110 HOH HOH . E 5 HOH A 96 796 51 HOH HOH . E 5 HOH A 97 797 131 HOH HOH . E 5 HOH A 98 798 68 HOH HOH . E 5 HOH A 99 799 20 HOH HOH . E 5 HOH A 100 800 1 HOH HOH . E 5 HOH A 101 801 79 HOH HOH . E 5 HOH A 102 802 100 HOH HOH . E 5 HOH A 103 803 30 HOH HOH . E 5 HOH A 104 804 155 HOH HOH . E 5 HOH A 105 805 95 HOH HOH . E 5 HOH A 106 806 101 HOH HOH . E 5 HOH A 107 807 25 HOH HOH . E 5 HOH A 108 808 12 HOH HOH . E 5 HOH A 109 809 162 HOH HOH . E 5 HOH A 110 810 73 HOH HOH . E 5 HOH A 111 811 139 HOH HOH . E 5 HOH A 112 812 56 HOH HOH . E 5 HOH A 113 813 113 HOH HOH . E 5 HOH A 114 814 152 HOH HOH . E 5 HOH A 115 815 109 HOH HOH . E 5 HOH A 116 816 81 HOH HOH . E 5 HOH A 117 817 187 HOH HOH . E 5 HOH A 118 818 198 HOH HOH . E 5 HOH A 119 819 60 HOH HOH . E 5 HOH A 120 820 125 HOH HOH . E 5 HOH A 121 821 128 HOH HOH . E 5 HOH A 122 822 217 HOH HOH . E 5 HOH A 123 823 163 HOH HOH . E 5 HOH A 124 824 105 HOH HOH . E 5 HOH A 125 825 169 HOH HOH . E 5 HOH A 126 826 14 HOH HOH . E 5 HOH A 127 827 133 HOH HOH . E 5 HOH A 128 828 220 HOH HOH . E 5 HOH A 129 829 178 HOH HOH . E 5 HOH A 130 830 96 HOH HOH . E 5 HOH A 131 831 177 HOH HOH . E 5 HOH A 132 832 213 HOH HOH . E 5 HOH A 133 833 94 HOH HOH . E 5 HOH A 134 834 166 HOH HOH . E 5 HOH A 135 835 185 HOH HOH . E 5 HOH A 136 836 204 HOH HOH . E 5 HOH A 137 837 90 HOH HOH . E 5 HOH A 138 838 203 HOH HOH . E 5 HOH A 139 839 196 HOH HOH . E 5 HOH A 140 840 202 HOH HOH . E 5 HOH A 141 841 221 HOH HOH . E 5 HOH A 142 842 192 HOH HOH . E 5 HOH A 143 843 80 HOH HOH . E 5 HOH A 144 844 208 HOH HOH . E 5 HOH A 145 845 143 HOH HOH . E 5 HOH A 146 846 205 HOH HOH . F 5 HOH B 1 201 176 HOH HOH . F 5 HOH B 2 202 134 HOH HOH . F 5 HOH B 3 203 87 HOH HOH . F 5 HOH B 4 204 135 HOH HOH . F 5 HOH B 5 205 180 HOH HOH . F 5 HOH B 6 206 194 HOH HOH . F 5 HOH B 7 207 45 HOH HOH . F 5 HOH B 8 208 106 HOH HOH . F 5 HOH B 9 209 91 HOH HOH . F 5 HOH B 10 210 222 HOH HOH . F 5 HOH B 11 211 62 HOH HOH . F 5 HOH B 12 212 2 HOH HOH . F 5 HOH B 13 213 76 HOH HOH . F 5 HOH B 14 214 111 HOH HOH . F 5 HOH B 15 215 170 HOH HOH . F 5 HOH B 16 216 22 HOH HOH . F 5 HOH B 17 217 54 HOH HOH . F 5 HOH B 18 218 72 HOH HOH . F 5 HOH B 19 219 123 HOH HOH . F 5 HOH B 20 220 78 HOH HOH . F 5 HOH B 21 221 70 HOH HOH . F 5 HOH B 22 222 55 HOH HOH . F 5 HOH B 23 223 174 HOH HOH . F 5 HOH B 24 224 26 HOH HOH . F 5 HOH B 25 225 31 HOH HOH . F 5 HOH B 26 226 161 HOH HOH . F 5 HOH B 27 227 120 HOH HOH . F 5 HOH B 28 228 186 HOH HOH . F 5 HOH B 29 229 124 HOH HOH . F 5 HOH B 30 230 21 HOH HOH . F 5 HOH B 31 231 200 HOH HOH . F 5 HOH B 32 232 138 HOH HOH . F 5 HOH B 33 233 118 HOH HOH . F 5 HOH B 34 234 48 HOH HOH . F 5 HOH B 35 235 144 HOH HOH . F 5 HOH B 36 236 66 HOH HOH . F 5 HOH B 37 237 23 HOH HOH . F 5 HOH B 38 238 8 HOH HOH . F 5 HOH B 39 239 115 HOH HOH . F 5 HOH B 40 240 35 HOH HOH . F 5 HOH B 41 241 43 HOH HOH . F 5 HOH B 42 242 159 HOH HOH . F 5 HOH B 43 243 24 HOH HOH . F 5 HOH B 44 244 137 HOH HOH . F 5 HOH B 45 245 61 HOH HOH . F 5 HOH B 46 246 5 HOH HOH . F 5 HOH B 47 247 151 HOH HOH . F 5 HOH B 48 248 46 HOH HOH . F 5 HOH B 49 249 188 HOH HOH . F 5 HOH B 50 250 98 HOH HOH . F 5 HOH B 51 251 129 HOH HOH . F 5 HOH B 52 252 224 HOH HOH . F 5 HOH B 53 253 97 HOH HOH . F 5 HOH B 54 254 209 HOH HOH . F 5 HOH B 55 255 74 HOH HOH . F 5 HOH B 56 256 219 HOH HOH . F 5 HOH B 57 257 167 HOH HOH . F 5 HOH B 58 258 145 HOH HOH . F 5 HOH B 59 259 130 HOH HOH . F 5 HOH B 60 260 175 HOH HOH . F 5 HOH B 61 261 149 HOH HOH . F 5 HOH B 62 262 216 HOH HOH . F 5 HOH B 63 263 157 HOH HOH . F 5 HOH B 64 264 197 HOH HOH . F 5 HOH B 65 265 127 HOH HOH . F 5 HOH B 66 266 214 HOH HOH . F 5 HOH B 67 267 103 HOH HOH . F 5 HOH B 68 268 207 HOH HOH . F 5 HOH B 69 269 201 HOH HOH . F 5 HOH B 70 270 67 HOH HOH . F 5 HOH B 71 271 172 HOH HOH . F 5 HOH B 72 272 193 HOH HOH . F 5 HOH B 73 273 183 HOH HOH . F 5 HOH B 74 274 121 HOH HOH . F 5 HOH B 75 275 182 HOH HOH . F 5 HOH B 76 276 119 HOH HOH . F 5 HOH B 77 277 164 HOH HOH . F 5 HOH B 78 278 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 MPO . . . D 4 -17.433 -9.762 -10.919 1 25.26 ? S1 MPO 602 A 1 HETATM 2 O O1 MPO . . . D 4 -17.185 -8.466 -10.319 1 23.26 ? O1 MPO 602 A 1 HETATM 3 O O2 MPO . . . D 4 -16.341 -10.275 -11.716 1 29.55 ? O2 MPO 602 A 1 HETATM 4 O O4 MPO . . . D 4 -21.308 -13.627 -16.519 1 29.51 ? O4 MPO 602 A 1 HETATM 5 N N1 MPO . . . D 4 -20.785 -11.91 -14.294 1 22.15 ? N1 MPO 602 A 1 HETATM 6 C C1 MPO . . . D 4 -18.816 -9.563 -12 1 20.37 ? C1 MPO 602 A 1 HETATM 7 O O3 MPO . . . D 4 -17.857 -10.765 -9.912 1 25.6 ? O3 MPO 602 A 1 HETATM 8 C C2 MPO . . . D 4 -19.18 -10.859 -12.699 1 22.1 ? C2 MPO 602 A 1 HETATM 9 C C3 MPO . . . D 4 -20.315 -10.65 -13.704 1 23.15 ? C3 MPO 602 A 1 HETATM 10 C C4 MPO . . . D 4 -19.699 -12.559 -15.038 1 30.79 ? C4 MPO 602 A 1 HETATM 11 C C5 MPO . . . D 4 -20.188 -13.848 -15.649 1 33.71 ? C5 MPO 602 A 1 HETATM 12 C C6 MPO . . . D 4 -22.362 -12.992 -15.807 1 28.89 ? C6 MPO 602 A 1 HETATM 13 C C7 MPO . . . D 4 -21.915 -11.684 -15.201 1 34.29 ? C7 MPO 602 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #