data_8RC7 # _model_server_result.job_id NCCZ9zPDlTYGNFjwWh8p5Q _model_server_result.datetime_utc '2025-01-10 15:44:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rc7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 8RC7 # _exptl.entry_id 8RC7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.055 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UREA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8RC7 _cell.length_a 25.8 _cell.length_b 25.8 _cell.length_c 21.49 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RC7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 1 D VAL 1 1_555 A N ORN 2 D ORN 2 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 A C VAL 1 D VAL 1 1_555 A N ORN 2 D ORN 2 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale3 A N VAL 1 D VAL 1 1_555 A C PRO 10 D PRO 10 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale4 A N VAL 1 D VAL 1 1_555 A C PRO 10 D PRO 10 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.289 ? covale ? covale5 A C ORN 2 D ORN 2 1_555 A N LEU 3 D LEU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C LEU 3 D LEU 3 1_555 A N DPN 4 D DPN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale7 A C DPN 4 D DPN 4 1_555 A N PRO 5 D PRO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale8 A C VAL 6 D VAL 6 1_555 A N ORN 7 D ORN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? covale ? covale9 A C ORN 7 D ORN 7 1_555 A N LEU 8 D LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? covale ? covale10 A C LEU 8 D LEU 8 1_555 A N DPN 9 D DPN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 A C DPN 9 D DPN 9 1_555 A N PRO 10 D PRO 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C H4 N2 O' _chem_comp.formula_weight 60.055 _chem_comp.id URE _chem_comp.mon_nstd_flag . _chem_comp.name UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O URE doub 84 n n C N1 URE sing 85 n n C N2 URE sing 86 n n N1 HN11 URE sing 87 n n N1 HN12 URE sing 88 n n N2 HN21 URE sing 89 n n N2 HN22 URE sing 90 n n # _atom_sites.entry_id 8RC7 _atom_sites.fract_transf_matrix[1][1] 0.03876 _atom_sites.fract_transf_matrix[1][2] 0.022378 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.044756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.046533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 URE D 1 101 1 URE URE . C 3 HOH D 1 201 88 HOH HOH . C 3 HOH D 2 202 89 HOH HOH . C 3 HOH D 3 203 85 HOH HOH . C 3 HOH D 4 204 90 HOH HOH . C 3 HOH D 5 205 91 HOH HOH . C 3 HOH D 6 206 86 HOH HOH . C 3 HOH D 7 207 1 HOH HOH . C 3 HOH D 8 208 87 HOH HOH . C 3 HOH D 9 209 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C URE . . . B 2 -4.742 8.21 -7.162 0.5 6.77 0 C URE 101 D 1 HETATM 2 O O URE . . . B 2 -5.356 9.278 -7.164 0.5 7.28 0 O URE 101 D 1 HETATM 3 N N1 URE . . . B 2 -4.905 7.294 -8.125 0.5 8.41 0 N1 URE 101 D 1 HETATM 4 N N2 URE . . . B 2 -3.93 7.877 -6.153 0.5 8.45 0 N2 URE 101 D 1 HETATM 5 H HN11 URE . . . B 2 -5.452 7.465 -8.798 0 8.31 0 HN11 URE 101 D 1 HETATM 6 H HN12 URE . . . B 2 -4.443 6.55 -8.103 0 8.31 0 HN12 URE 101 D 1 HETATM 7 H HN21 URE . . . B 2 -3.798 8.438 -5.493 0 8.49 0 HN21 URE 101 D 1 HETATM 8 H HN22 URE . . . B 2 -3.487 7.113 -6.192 0 8.49 0 HN22 URE 101 D 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 409 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #