data_8RC9 # _model_server_result.job_id VXEjEG08_bOh8P7kmd0whA _model_server_result.datetime_utc '2024-10-11 03:24:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rc9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1110}' # _entry.id 8RC9 # _exptl.entry_id 8RC9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 31.999 _entity.id 9 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'OXYGEN MOLECULE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RC9 _cell.length_a 65.18 _cell.length_b 127.926 _cell.length_c 149.467 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RC9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 845 A CYS 845 1_555 A SG CYS 872 A CYS 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc1 A SG CYS 50 A CYS 50 1_555 E FE3 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc2 A SG CYS 53 A CYS 53 1_555 E FE1 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 A SG CYS 57 A CYS 57 1_555 E FE2 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc4 A SG CYS 88 A CYS 88 1_555 E FE4 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc5 C S12 MGD . A MGD 1101 1_555 F W W . A W 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc6 C S13 MGD . A MGD 1101 1_555 F W W . A W 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc7 D S12 MGD . A MGD 1102 1_555 F W W . A W 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc8 D S13 MGD . A MGD 1102 1_555 F W W . A W 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc9 F W W . A W 1104 1_555 G S H2S . A H2S 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc10 F W W . A W 1104 1_555 L O1 OXY . A OXY 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc11 F W W . A W 1104 1_555 L O2 OXY . A OXY 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc12 B SG CYS 11 B CYS 12 1_555 M FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc13 B SG CYS 14 B CYS 15 1_555 M FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc14 B SG CYS 17 B CYS 18 1_555 M FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc15 B SG CYS 21 B CYS 22 1_555 O FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc16 B SG CYS 73 B CYS 74 1_555 N FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc17 B SG CYS 76 B CYS 77 1_555 N FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc18 B SG CYS 81 B CYS 82 1_555 N FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc19 B SG CYS 120 B CYS 121 1_555 N FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc20 B SG CYS 137 B CYS 138 1_555 O FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc21 B SG CYS 140 B CYS 141 1_555 O FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc22 B SG CYS 152 B CYS 153 1_555 O FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc23 B SG CYS 156 B CYS 157 1_555 M FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? # _chem_comp.formula O2 _chem_comp.formula_weight 31.999 _chem_comp.id OXY _chem_comp.mon_nstd_flag . _chem_comp.name 'OXYGEN MOLECULE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 O1 _chem_comp_bond.atom_id_2 O2 _chem_comp_bond.comp_id OXY _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 339 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 8RC9 _atom_sites.fract_transf_matrix[1][1] 0.015342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007817 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MGD A 1 1101 1101 MGD MGD . D 3 MGD A 1 1102 1102 MGD MGD . E 4 SF4 A 1 1103 1103 SF4 SF4 . F 5 W A 1 1104 1104 W W . G 6 H2S A 1 1105 1105 H2S H2S . H 7 GOL A 1 1106 1201 GOL GOL . I 7 GOL A 1 1107 1301 GOL GOL . J 8 EDO A 1 1108 1401 EDO EDO . K 8 EDO A 1 1109 1501 EDO EDO . L 9 OXY A 1 1110 1601 OXY OXY . M 4 SF4 B 1 301 301 SF4 SF4 . N 4 SF4 B 1 302 302 SF4 SF4 . O 4 SF4 B 1 303 303 SF4 SF4 . P 10 HOH A 1 1201 78 HOH HOH . P 10 HOH A 2 1202 136 HOH HOH . P 10 HOH A 3 1203 198 HOH HOH . P 10 HOH A 4 1204 203 HOH HOH . P 10 HOH A 5 1205 163 HOH HOH . P 10 HOH A 6 1206 117 HOH HOH . P 10 HOH A 7 1207 135 HOH HOH . P 10 HOH A 8 1208 36 HOH HOH . P 10 HOH A 9 1209 205 HOH HOH . P 10 HOH A 10 1210 166 HOH HOH . P 10 HOH A 11 1211 16 HOH HOH . P 10 HOH A 12 1212 181 HOH HOH . P 10 HOH A 13 1213 81 HOH HOH . P 10 HOH A 14 1214 152 HOH HOH . P 10 HOH A 15 1215 29 HOH HOH . P 10 HOH A 16 1216 8 HOH HOH . P 10 HOH A 17 1217 200 HOH HOH . P 10 HOH A 18 1218 7 HOH HOH . P 10 HOH A 19 1219 185 HOH HOH . P 10 HOH A 20 1220 68 HOH HOH . P 10 HOH A 21 1221 73 HOH HOH . P 10 HOH A 22 1222 21 HOH HOH . P 10 HOH A 23 1223 87 HOH HOH . P 10 HOH A 24 1224 196 HOH HOH . P 10 HOH A 25 1225 176 HOH HOH . P 10 HOH A 26 1226 42 HOH HOH . P 10 HOH A 27 1227 202 HOH HOH . P 10 HOH A 28 1228 58 HOH HOH . P 10 HOH A 29 1229 127 HOH HOH . P 10 HOH A 30 1230 113 HOH HOH . P 10 HOH A 31 1231 201 HOH HOH . P 10 HOH A 32 1232 40 HOH HOH . P 10 HOH A 33 1233 23 HOH HOH . P 10 HOH A 34 1234 3 HOH HOH . P 10 HOH A 35 1235 153 HOH HOH . P 10 HOH A 36 1236 38 HOH HOH . P 10 HOH A 37 1237 120 HOH HOH . P 10 HOH A 38 1238 34 HOH HOH . P 10 HOH A 39 1239 67 HOH HOH . P 10 HOH A 40 1240 35 HOH HOH . P 10 HOH A 41 1241 144 HOH HOH . P 10 HOH A 42 1242 145 HOH HOH . P 10 HOH A 43 1243 10 HOH HOH . P 10 HOH A 44 1244 84 HOH HOH . P 10 HOH A 45 1245 17 HOH HOH . P 10 HOH A 46 1246 47 HOH HOH . P 10 HOH A 47 1247 184 HOH HOH . P 10 HOH A 48 1248 63 HOH HOH . P 10 HOH A 49 1249 116 HOH HOH . P 10 HOH A 50 1250 192 HOH HOH . P 10 HOH A 51 1251 83 HOH HOH . P 10 HOH A 52 1252 108 HOH HOH . P 10 HOH A 53 1253 24 HOH HOH . P 10 HOH A 54 1254 44 HOH HOH . P 10 HOH A 55 1255 209 HOH HOH . P 10 HOH A 56 1256 64 HOH HOH . P 10 HOH A 57 1257 115 HOH HOH . P 10 HOH A 58 1258 18 HOH HOH . P 10 HOH A 59 1259 130 HOH HOH . P 10 HOH A 60 1260 43 HOH HOH . P 10 HOH A 61 1261 151 HOH HOH . P 10 HOH A 62 1262 75 HOH HOH . P 10 HOH A 63 1263 142 HOH HOH . P 10 HOH A 64 1264 48 HOH HOH . P 10 HOH A 65 1265 53 HOH HOH . P 10 HOH A 66 1266 11 HOH HOH . P 10 HOH A 67 1267 167 HOH HOH . P 10 HOH A 68 1268 20 HOH HOH . P 10 HOH A 69 1269 107 HOH HOH . P 10 HOH A 70 1270 188 HOH HOH . P 10 HOH A 71 1271 96 HOH HOH . P 10 HOH A 72 1272 106 HOH HOH . P 10 HOH A 73 1273 57 HOH HOH . P 10 HOH A 74 1274 14 HOH HOH . P 10 HOH A 75 1275 32 HOH HOH . P 10 HOH A 76 1276 71 HOH HOH . P 10 HOH A 77 1277 94 HOH HOH . P 10 HOH A 78 1278 39 HOH HOH . P 10 HOH A 79 1279 161 HOH HOH . P 10 HOH A 80 1280 111 HOH HOH . P 10 HOH A 81 1281 86 HOH HOH . P 10 HOH A 82 1282 173 HOH HOH . P 10 HOH A 83 1283 174 HOH HOH . P 10 HOH A 84 1284 59 HOH HOH . P 10 HOH A 85 1285 28 HOH HOH . P 10 HOH A 86 1286 98 HOH HOH . P 10 HOH A 87 1287 156 HOH HOH . P 10 HOH A 88 1288 195 HOH HOH . P 10 HOH A 89 1289 170 HOH HOH . P 10 HOH A 90 1290 102 HOH HOH . P 10 HOH A 91 1291 193 HOH HOH . P 10 HOH A 92 1292 97 HOH HOH . P 10 HOH A 93 1293 92 HOH HOH . P 10 HOH A 94 1294 146 HOH HOH . P 10 HOH A 95 1295 208 HOH HOH . P 10 HOH A 96 1296 6 HOH HOH . P 10 HOH A 97 1297 199 HOH HOH . P 10 HOH A 98 1298 41 HOH HOH . P 10 HOH A 99 1299 30 HOH HOH . P 10 HOH A 100 1300 25 HOH HOH . P 10 HOH A 101 1301 56 HOH HOH . P 10 HOH A 102 1302 74 HOH HOH . P 10 HOH A 103 1303 46 HOH HOH . P 10 HOH A 104 1304 168 HOH HOH . P 10 HOH A 105 1305 66 HOH HOH . P 10 HOH A 106 1306 103 HOH HOH . P 10 HOH A 107 1307 147 HOH HOH . P 10 HOH A 108 1308 93 HOH HOH . P 10 HOH A 109 1309 206 HOH HOH . P 10 HOH A 110 1310 89 HOH HOH . P 10 HOH A 111 1311 69 HOH HOH . P 10 HOH A 112 1312 61 HOH HOH . P 10 HOH A 113 1313 118 HOH HOH . P 10 HOH A 114 1314 37 HOH HOH . P 10 HOH A 115 1315 148 HOH HOH . P 10 HOH A 116 1316 13 HOH HOH . P 10 HOH A 117 1317 1 HOH HOH . P 10 HOH A 118 1318 119 HOH HOH . P 10 HOH A 119 1319 77 HOH HOH . P 10 HOH A 120 1320 101 HOH HOH . P 10 HOH A 121 1321 26 HOH HOH . P 10 HOH A 122 1322 22 HOH HOH . P 10 HOH A 123 1323 72 HOH HOH . P 10 HOH A 124 1324 149 HOH HOH . P 10 HOH A 125 1325 60 HOH HOH . P 10 HOH A 126 1326 137 HOH HOH . P 10 HOH A 127 1327 150 HOH HOH . P 10 HOH A 128 1328 12 HOH HOH . P 10 HOH A 129 1329 141 HOH HOH . P 10 HOH A 130 1330 95 HOH HOH . P 10 HOH A 131 1331 159 HOH HOH . P 10 HOH A 132 1332 65 HOH HOH . P 10 HOH A 133 1333 160 HOH HOH . P 10 HOH A 134 1334 158 HOH HOH . P 10 HOH A 135 1335 99 HOH HOH . P 10 HOH A 136 1336 4 HOH HOH . P 10 HOH A 137 1337 165 HOH HOH . P 10 HOH A 138 1338 80 HOH HOH . P 10 HOH A 139 1339 31 HOH HOH . P 10 HOH A 140 1340 154 HOH HOH . P 10 HOH A 141 1341 54 HOH HOH . P 10 HOH A 142 1342 100 HOH HOH . P 10 HOH A 143 1343 55 HOH HOH . P 10 HOH A 144 1344 190 HOH HOH . P 10 HOH A 145 1345 121 HOH HOH . P 10 HOH A 146 1346 132 HOH HOH . P 10 HOH A 147 1347 104 HOH HOH . P 10 HOH A 148 1348 33 HOH HOH . P 10 HOH A 149 1349 143 HOH HOH . P 10 HOH A 150 1350 177 HOH HOH . P 10 HOH A 151 1351 189 HOH HOH . P 10 HOH A 152 1352 138 HOH HOH . P 10 HOH A 153 1353 182 HOH HOH . P 10 HOH A 154 1354 91 HOH HOH . P 10 HOH A 155 1355 134 HOH HOH . P 10 HOH A 156 1356 70 HOH HOH . P 10 HOH A 157 1357 157 HOH HOH . P 10 HOH A 158 1358 129 HOH HOH . P 10 HOH A 159 1359 105 HOH HOH . P 10 HOH A 160 1360 19 HOH HOH . P 10 HOH A 161 1361 169 HOH HOH . P 10 HOH A 162 1362 27 HOH HOH . P 10 HOH A 163 1363 122 HOH HOH . P 10 HOH A 164 1364 85 HOH HOH . P 10 HOH A 165 1365 123 HOH HOH . P 10 HOH A 166 1366 179 HOH HOH . P 10 HOH A 167 1367 15 HOH HOH . P 10 HOH A 168 1368 131 HOH HOH . P 10 HOH A 169 1369 183 HOH HOH . P 10 HOH A 170 1370 178 HOH HOH . P 10 HOH A 171 1371 49 HOH HOH . P 10 HOH A 172 1372 180 HOH HOH . Q 10 HOH B 1 401 191 HOH HOH . Q 10 HOH B 2 402 197 HOH HOH . Q 10 HOH B 3 403 172 HOH HOH . Q 10 HOH B 4 404 139 HOH HOH . Q 10 HOH B 5 405 164 HOH HOH . Q 10 HOH B 6 406 62 HOH HOH . Q 10 HOH B 7 407 207 HOH HOH . Q 10 HOH B 8 408 9 HOH HOH . Q 10 HOH B 9 409 114 HOH HOH . Q 10 HOH B 10 410 112 HOH HOH . Q 10 HOH B 11 411 76 HOH HOH . Q 10 HOH B 12 412 5 HOH HOH . Q 10 HOH B 13 413 52 HOH HOH . Q 10 HOH B 14 414 155 HOH HOH . Q 10 HOH B 15 415 187 HOH HOH . Q 10 HOH B 16 416 50 HOH HOH . Q 10 HOH B 17 417 109 HOH HOH . Q 10 HOH B 18 418 45 HOH HOH . Q 10 HOH B 19 419 88 HOH HOH . Q 10 HOH B 20 420 162 HOH HOH . Q 10 HOH B 21 421 82 HOH HOH . Q 10 HOH B 22 422 204 HOH HOH . Q 10 HOH B 23 423 79 HOH HOH . Q 10 HOH B 24 424 171 HOH HOH . Q 10 HOH B 25 425 133 HOH HOH . Q 10 HOH B 26 426 140 HOH HOH . Q 10 HOH B 27 427 128 HOH HOH . Q 10 HOH B 28 428 175 HOH HOH . Q 10 HOH B 29 429 124 HOH HOH . Q 10 HOH B 30 430 110 HOH HOH . Q 10 HOH B 31 431 126 HOH HOH . Q 10 HOH B 32 432 186 HOH HOH . Q 10 HOH B 33 433 125 HOH HOH . Q 10 HOH B 34 434 194 HOH HOH . Q 10 HOH B 35 435 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OXY . . . L 9 -23.106 9.878 -26.943 1 32.91 0 O1 OXY 1110 A 1 HETATM 2 O O2 OXY . . . L 9 -22.288 10.239 -26.095 1 44.42 0 O2 OXY 1110 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 2 #