data_8RCB # _model_server_result.job_id lUb-71Tudath2eZn77_fKA _model_server_result.datetime_utc '2024-11-29 16:50:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rcb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1107}' # _entry.id 8RCB # _exptl.entry_id 8RCB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RCB _cell.length_a 64.433 _cell.length_b 123.085 _cell.length_c 148.138 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RCB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 H N N ? 7 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 845 A CYS 845 1_555 A SG CYS 872 A CYS 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc1 A SG CYS 50 A CYS 50 1_555 E FE3 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc2 A SG CYS 53 A CYS 53 1_555 E FE1 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc3 A SG CYS 57 A CYS 57 1_555 E FE2 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc4 A SG CYS 88 A CYS 88 1_555 E FE4 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc5 C S12 MGD . A MGD 1101 1_555 F W W . A W 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc6 C S13 MGD . A MGD 1101 1_555 F W W . A W 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc7 D S12 MGD . A MGD 1102 1_555 F W W . A W 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc8 D S13 MGD . A MGD 1102 1_555 F W W . A W 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc9 F W W . A W 1104 1_555 G S H2S . A H2S 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc10 F W W . A W 1104 1_555 L O1 OXY . A OXY 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc11 F W W . A W 1104 1_555 L O2 OXY . A OXY 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc12 B SG CYS 11 B CYS 12 1_555 M FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc13 B SG CYS 14 B CYS 15 1_555 M FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc14 B SG CYS 17 B CYS 18 1_555 M FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc15 B SG CYS 21 B CYS 22 1_555 O FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc16 B SG CYS 73 B CYS 74 1_555 N FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc17 B SG CYS 76 B CYS 77 1_555 N FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc18 B SG CYS 81 B CYS 82 1_555 N FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc19 B SG CYS 120 B CYS 121 1_555 N FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc20 B SG CYS 137 B CYS 138 1_555 O FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc21 B SG CYS 140 B CYS 141 1_555 O FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc22 B SG CYS 152 B CYS 153 1_555 O FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc23 B SG CYS 156 B CYS 157 1_555 M FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 8RCB _atom_sites.fract_transf_matrix[1][1] 0.01552 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MGD A 1 1101 1101 MGD MGD . D 3 MGD A 1 1102 1102 MGD MGD . E 4 SF4 A 1 1103 1103 SF4 SF4 . F 5 W A 1 1104 1104 W W . G 6 H2S A 1 1105 1105 H2S H2S . H 7 GOL A 1 1106 1106 GOL GOL . I 7 GOL A 1 1107 1108 GOL GOL . J 8 PEG A 1 1108 1109 PEG PEG . K 9 EDO A 1 1109 1110 EDO EDO . L 10 OXY A 1 1110 1201 OXY OXY . M 4 SF4 B 1 301 301 SF4 SF4 . N 4 SF4 B 1 302 302 SF4 SF4 . O 4 SF4 B 1 303 303 SF4 SF4 . P 9 EDO B 1 304 304 EDO EDO . Q 11 HOH A 1 1201 34 HOH HOH . Q 11 HOH A 2 1202 15 HOH HOH . Q 11 HOH A 3 1203 17 HOH HOH . Q 11 HOH A 4 1204 89 HOH HOH . Q 11 HOH A 5 1205 57 HOH HOH . Q 11 HOH A 6 1206 28 HOH HOH . Q 11 HOH A 7 1207 33 HOH HOH . Q 11 HOH A 8 1208 9 HOH HOH . Q 11 HOH A 9 1209 35 HOH HOH . Q 11 HOH A 10 1210 74 HOH HOH . Q 11 HOH A 11 1211 51 HOH HOH . Q 11 HOH A 12 1212 70 HOH HOH . Q 11 HOH A 13 1213 54 HOH HOH . Q 11 HOH A 14 1214 40 HOH HOH . Q 11 HOH A 15 1215 78 HOH HOH . Q 11 HOH A 16 1216 7 HOH HOH . Q 11 HOH A 17 1217 8 HOH HOH . Q 11 HOH A 18 1218 90 HOH HOH . Q 11 HOH A 19 1219 72 HOH HOH . Q 11 HOH A 20 1220 61 HOH HOH . Q 11 HOH A 21 1221 73 HOH HOH . Q 11 HOH A 22 1222 31 HOH HOH . Q 11 HOH A 23 1223 20 HOH HOH . Q 11 HOH A 24 1224 59 HOH HOH . Q 11 HOH A 25 1225 50 HOH HOH . Q 11 HOH A 26 1226 21 HOH HOH . Q 11 HOH A 27 1227 64 HOH HOH . Q 11 HOH A 28 1228 47 HOH HOH . Q 11 HOH A 29 1229 58 HOH HOH . Q 11 HOH A 30 1230 79 HOH HOH . Q 11 HOH A 31 1231 30 HOH HOH . Q 11 HOH A 32 1232 12 HOH HOH . Q 11 HOH A 33 1233 23 HOH HOH . Q 11 HOH A 34 1234 67 HOH HOH . Q 11 HOH A 35 1235 48 HOH HOH . Q 11 HOH A 36 1236 38 HOH HOH . Q 11 HOH A 37 1237 62 HOH HOH . Q 11 HOH A 38 1238 39 HOH HOH . Q 11 HOH A 39 1239 86 HOH HOH . Q 11 HOH A 40 1240 87 HOH HOH . Q 11 HOH A 41 1241 69 HOH HOH . Q 11 HOH A 42 1242 10 HOH HOH . Q 11 HOH A 43 1243 81 HOH HOH . Q 11 HOH A 44 1244 63 HOH HOH . Q 11 HOH A 45 1245 82 HOH HOH . Q 11 HOH A 46 1246 49 HOH HOH . Q 11 HOH A 47 1247 5 HOH HOH . Q 11 HOH A 48 1248 60 HOH HOH . Q 11 HOH A 49 1249 36 HOH HOH . Q 11 HOH A 50 1250 53 HOH HOH . Q 11 HOH A 51 1251 16 HOH HOH . Q 11 HOH A 52 1252 26 HOH HOH . Q 11 HOH A 53 1253 37 HOH HOH . Q 11 HOH A 54 1254 84 HOH HOH . Q 11 HOH A 55 1255 46 HOH HOH . Q 11 HOH A 56 1256 42 HOH HOH . Q 11 HOH A 57 1257 19 HOH HOH . Q 11 HOH A 58 1258 3 HOH HOH . Q 11 HOH A 59 1259 13 HOH HOH . Q 11 HOH A 60 1260 41 HOH HOH . Q 11 HOH A 61 1261 45 HOH HOH . Q 11 HOH A 62 1262 68 HOH HOH . Q 11 HOH A 63 1263 88 HOH HOH . Q 11 HOH A 64 1264 55 HOH HOH . Q 11 HOH A 65 1265 22 HOH HOH . Q 11 HOH A 66 1266 91 HOH HOH . Q 11 HOH A 67 1267 18 HOH HOH . Q 11 HOH A 68 1268 2 HOH HOH . Q 11 HOH A 69 1269 52 HOH HOH . Q 11 HOH A 70 1270 77 HOH HOH . Q 11 HOH A 71 1271 4 HOH HOH . Q 11 HOH A 72 1272 56 HOH HOH . Q 11 HOH A 73 1273 6 HOH HOH . Q 11 HOH A 74 1274 65 HOH HOH . Q 11 HOH A 75 1275 43 HOH HOH . Q 11 HOH A 76 1276 44 HOH HOH . Q 11 HOH A 77 1277 1 HOH HOH . Q 11 HOH A 78 1278 14 HOH HOH . Q 11 HOH A 79 1279 11 HOH HOH . Q 11 HOH A 80 1280 83 HOH HOH . Q 11 HOH A 81 1281 80 HOH HOH . Q 11 HOH A 82 1282 93 HOH HOH . Q 11 HOH A 83 1283 71 HOH HOH . Q 11 HOH A 84 1284 94 HOH HOH . Q 11 HOH A 85 1285 66 HOH HOH . R 11 HOH B 1 401 27 HOH HOH . R 11 HOH B 2 402 75 HOH HOH . R 11 HOH B 3 403 32 HOH HOH . R 11 HOH B 4 404 85 HOH HOH . R 11 HOH B 5 405 92 HOH HOH . R 11 HOH B 6 406 76 HOH HOH . R 11 HOH B 7 407 24 HOH HOH . R 11 HOH B 8 408 29 HOH HOH . R 11 HOH B 9 409 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 7 -0.855 13.621 17.249 1 45.38 0 C1 GOL 1107 A 1 HETATM 2 O O1 GOL . . . I 7 -1.352 12.873 16.142 1 39.63 0 O1 GOL 1107 A 1 HETATM 3 C C2 GOL . . . I 7 0.654 13.735 17.201 1 44.42 0 C2 GOL 1107 A 1 HETATM 4 O O2 GOL . . . I 7 1.045 14.319 15.959 1 35.04 0 O2 GOL 1107 A 1 HETATM 5 C C3 GOL . . . I 7 1.225 14.537 18.35 1 46.77 0 C3 GOL 1107 A 1 HETATM 6 O O3 GOL . . . I 7 2.65 14.555 18.323 1 40.92 0 O3 GOL 1107 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #