data_8RCC # _model_server_result.job_id 3wwlX9Y2PgoKEUtKqUWSZw _model_server_result.datetime_utc '2024-10-10 10:26:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rcc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":3301}' # _entry.id 8RCC # _exptl.entry_id 8RCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RCC _cell.length_a 64.81 _cell.length_b 124.401 _cell.length_c 150.307 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 J N N ? 8 L N N ? 8 R N N ? 8 T N N ? 8 X N N ? 8 BA N N ? 8 EA N N ? 8 FA N N ? 8 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 845 A CYS 845 1_555 A SG CYS 872 A CYS 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc1 A SG CYS 50 A CYS 50 1_555 E FE3 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc2 A SG CYS 53 A CYS 53 1_555 E FE1 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc3 A SG CYS 57 A CYS 57 1_555 E FE2 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc4 A SG CYS 88 A CYS 88 1_555 E FE4 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc5 C S12 MGD . A MGD 1101 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc6 C S13 MGD . A MGD 1101 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc7 D S12 MGD . A MGD 1102 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc8 D S13 MGD . A MGD 1102 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc9 G W W . A W 1105 1_555 GA O2 OXY . A OXY 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc10 B SG CYS 12 B CYS 12 1_555 IA FE4 SF4 . B SF4 3302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc11 B SG CYS 15 B CYS 15 1_555 IA FE3 SF4 . B SF4 3302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc12 B SG CYS 18 B CYS 18 1_555 IA FE2 SF4 . B SF4 3302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc13 B SG CYS 22 B CYS 22 1_555 KA FE4 SF4 . B SF4 3304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc14 B SG CYS 74 B CYS 74 1_555 JA FE3 SF4 . B SF4 3303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc15 B SG CYS 77 B CYS 77 1_555 JA FE1 SF4 . B SF4 3303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc16 B SG CYS 82 B CYS 82 1_555 JA FE2 SF4 . B SF4 3303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc17 B SG CYS 121 B CYS 121 1_555 JA FE4 SF4 . B SF4 3303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc18 B SG CYS 138 B CYS 138 1_555 KA FE1 SF4 . B SF4 3304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc19 B SG CYS 141 B CYS 141 1_555 KA FE2 SF4 . B SF4 3304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc20 B SG CYS 153 B CYS 153 1_555 KA FE3 SF4 . B SF4 3304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc21 B SG CYS 157 B CYS 157 1_555 IA FE1 SF4 . B SF4 3302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 85 n n C1 C2 EDO sing 86 n n C1 H11 EDO sing 87 n n C1 H12 EDO sing 88 n n O1 HO1 EDO sing 89 n n C2 O2 EDO sing 90 n n C2 H21 EDO sing 91 n n C2 H22 EDO sing 92 n n O2 HO2 EDO sing 93 n n # _atom_sites.entry_id 8RCC _atom_sites.fract_transf_matrix[1][1] 0.01543 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006653 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MGD A 1 1101 1101 MGD MGD . D 3 MGD A 1 1102 1102 MGD MGD . E 4 SF4 A 1 1103 1103 SF4 SF4 . F 5 H2S A 1 1104 1109 H2S H2S . G 6 W A 1 1105 1110 W W . H 7 GOL A 1 1106 1301 GOL GOL . I 7 GOL A 1 1107 1401 GOL GOL . J 8 EDO A 1 1108 1501 EDO EDO . K 9 PEG A 1 1109 1601 PEG PEG . L 8 EDO A 1 1110 1701 EDO EDO . M 10 CO2 A 1 1111 1801 CO2 CO2 . N 10 CO2 A 1 1112 1901 CO2 CO2 . O 10 CO2 A 1 1113 2001 CO2 CO2 . P 10 CO2 A 1 1114 2101 CO2 CO2 . Q 10 CO2 A 1 1115 2201 CO2 CO2 . R 8 EDO A 1 1116 2301 EDO EDO . S 10 CO2 A 1 1117 2401 CO2 CO2 . T 8 EDO A 1 1118 2501 EDO EDO . U 10 CO2 A 1 1119 2601 CO2 CO2 . V 10 CO2 A 1 1120 2701 CO2 CO2 . W 10 CO2 A 1 1121 2801 CO2 CO2 . X 8 EDO A 1 1122 3001 EDO EDO . Y 10 CO2 A 1 1123 3101 CO2 CO2 . Z 10 CO2 A 1 1124 3201 CO2 CO2 . AA 10 CO2 A 1 1125 3401 CO2 CO2 . BA 8 EDO A 1 1126 3501 EDO EDO . CA 10 CO2 A 1 1127 3601 CO2 CO2 . DA 10 CO2 A 1 1128 3701 CO2 CO2 . EA 8 EDO A 1 1129 3801 EDO EDO . FA 8 EDO A 1 1130 3901 EDO EDO . GA 11 OXY A 1 1131 4001 OXY OXY . HA 8 EDO B 1 3301 3301 EDO EDO . IA 4 SF4 B 1 3302 301 SF4 SF4 . JA 4 SF4 B 1 3303 302 SF4 SF4 . KA 4 SF4 B 1 3304 303 SF4 SF4 . LA 7 GOL B 1 3305 401 GOL GOL . MA 10 CO2 B 1 3306 501 CO2 CO2 . NA 10 CO2 B 1 3307 601 CO2 CO2 . OA 10 CO2 B 1 3308 701 CO2 CO2 . PA 12 HOH A 1 1201 102 HOH HOH . PA 12 HOH A 2 1202 22 HOH HOH . PA 12 HOH A 3 1203 67 HOH HOH . PA 12 HOH A 4 1204 100 HOH HOH . PA 12 HOH A 5 1205 65 HOH HOH . PA 12 HOH A 6 1206 10 HOH HOH . PA 12 HOH A 7 1207 59 HOH HOH . PA 12 HOH A 8 1208 25 HOH HOH . PA 12 HOH A 9 1209 56 HOH HOH . PA 12 HOH A 10 1210 55 HOH HOH . PA 12 HOH A 11 1211 61 HOH HOH . PA 12 HOH A 12 1212 29 HOH HOH . PA 12 HOH A 13 1213 63 HOH HOH . PA 12 HOH A 14 1214 30 HOH HOH . PA 12 HOH A 15 1215 87 HOH HOH . PA 12 HOH A 16 1216 2 HOH HOH . PA 12 HOH A 17 1217 46 HOH HOH . PA 12 HOH A 18 1218 78 HOH HOH . PA 12 HOH A 19 1219 49 HOH HOH . PA 12 HOH A 20 1220 8 HOH HOH . PA 12 HOH A 21 1221 35 HOH HOH . PA 12 HOH A 22 1222 38 HOH HOH . PA 12 HOH A 23 1223 28 HOH HOH . PA 12 HOH A 24 1224 48 HOH HOH . PA 12 HOH A 25 1225 75 HOH HOH . PA 12 HOH A 26 1226 44 HOH HOH . PA 12 HOH A 27 1227 33 HOH HOH . PA 12 HOH A 28 1228 83 HOH HOH . PA 12 HOH A 29 1229 80 HOH HOH . PA 12 HOH A 30 1230 76 HOH HOH . PA 12 HOH A 31 1231 19 HOH HOH . PA 12 HOH A 32 1232 52 HOH HOH . PA 12 HOH A 33 1233 41 HOH HOH . PA 12 HOH A 34 1234 60 HOH HOH . PA 12 HOH A 35 1235 70 HOH HOH . PA 12 HOH A 36 1236 24 HOH HOH . PA 12 HOH A 37 1237 20 HOH HOH . PA 12 HOH A 38 1238 58 HOH HOH . PA 12 HOH A 39 1239 34 HOH HOH . PA 12 HOH A 40 1240 71 HOH HOH . PA 12 HOH A 41 1241 42 HOH HOH . PA 12 HOH A 42 1242 14 HOH HOH . PA 12 HOH A 43 1243 37 HOH HOH . PA 12 HOH A 44 1244 17 HOH HOH . PA 12 HOH A 45 1245 43 HOH HOH . PA 12 HOH A 46 1246 82 HOH HOH . PA 12 HOH A 47 1247 77 HOH HOH . PA 12 HOH A 48 1248 27 HOH HOH . PA 12 HOH A 49 1249 6 HOH HOH . PA 12 HOH A 50 1250 57 HOH HOH . PA 12 HOH A 51 1251 62 HOH HOH . PA 12 HOH A 52 1252 40 HOH HOH . PA 12 HOH A 53 1253 98 HOH HOH . PA 12 HOH A 54 1254 26 HOH HOH . PA 12 HOH A 55 1255 94 HOH HOH . PA 12 HOH A 56 1256 9 HOH HOH . PA 12 HOH A 57 1257 16 HOH HOH . PA 12 HOH A 58 1258 1 HOH HOH . PA 12 HOH A 59 1259 11 HOH HOH . PA 12 HOH A 60 1260 99 HOH HOH . PA 12 HOH A 61 1261 84 HOH HOH . PA 12 HOH A 62 1262 97 HOH HOH . PA 12 HOH A 63 1263 86 HOH HOH . PA 12 HOH A 64 1264 51 HOH HOH . PA 12 HOH A 65 1265 92 HOH HOH . PA 12 HOH A 66 1266 105 HOH HOH . PA 12 HOH A 67 1267 36 HOH HOH . PA 12 HOH A 68 1268 103 HOH HOH . PA 12 HOH A 69 1269 5 HOH HOH . PA 12 HOH A 70 1270 95 HOH HOH . PA 12 HOH A 71 1271 107 HOH HOH . PA 12 HOH A 72 1272 88 HOH HOH . PA 12 HOH A 73 1273 108 HOH HOH . PA 12 HOH A 74 1274 89 HOH HOH . QA 12 HOH B 1 3401 73 HOH HOH . QA 12 HOH B 2 3402 74 HOH HOH . QA 12 HOH B 3 3403 79 HOH HOH . QA 12 HOH B 4 3404 45 HOH HOH . QA 12 HOH B 5 3405 72 HOH HOH . QA 12 HOH B 6 3406 106 HOH HOH . QA 12 HOH B 7 3407 47 HOH HOH . QA 12 HOH B 8 3408 54 HOH HOH . QA 12 HOH B 9 3409 104 HOH HOH . QA 12 HOH B 10 3410 69 HOH HOH . QA 12 HOH B 11 3411 85 HOH HOH . QA 12 HOH B 12 3412 7 HOH HOH . QA 12 HOH B 13 3413 68 HOH HOH . QA 12 HOH B 14 3414 13 HOH HOH . QA 12 HOH B 15 3415 50 HOH HOH . QA 12 HOH B 16 3416 15 HOH HOH . QA 12 HOH B 17 3417 3 HOH HOH . QA 12 HOH B 18 3418 23 HOH HOH . QA 12 HOH B 19 3419 96 HOH HOH . QA 12 HOH B 20 3420 31 HOH HOH . QA 12 HOH B 21 3421 66 HOH HOH . QA 12 HOH B 22 3422 4 HOH HOH . QA 12 HOH B 23 3423 81 HOH HOH . QA 12 HOH B 24 3424 12 HOH HOH . QA 12 HOH B 25 3425 53 HOH HOH . QA 12 HOH B 26 3426 93 HOH HOH . QA 12 HOH B 27 3427 91 HOH HOH . QA 12 HOH B 28 3428 101 HOH HOH . QA 12 HOH B 29 3429 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . HA 8 -23.39 30 -43.778 1 50.19 0 C1 EDO 3301 B 1 HETATM 2 O O1 EDO . . . HA 8 -23.438 30.276 -42.384 1 50.16 0 O1 EDO 3301 B 1 HETATM 3 C C2 EDO . . . HA 8 -23.766 31.16 -44.63 1 48.28 0 C2 EDO 3301 B 1 HETATM 4 O O2 EDO . . . HA 8 -24.474 30.776 -45.798 1 45.84 0 O2 EDO 3301 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #