data_8RCE # _model_server_result.job_id FoQ4XYjwmtxvTEIjQR4Oog _model_server_result.datetime_utc '2025-07-05 16:29:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rce # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8RCE # _exptl.entry_id 8RCE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 368.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-(4-naphthalen-1-ylphenoxy)-3-phenyl-propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RCE _cell.length_a 62.28 _cell.length_b 62.28 _cell.length_c 125.54 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RCE _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H20 O3' _chem_comp.formula_weight 368.425 _chem_comp.id WUE _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-(4-naphthalen-1-ylphenoxy)-3-phenyl-propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 WUE doub 348 n y C17 C16 WUE sing 349 n y C18 C19 WUE sing 350 n y C15 C16 WUE doub 351 n y C15 C14 WUE sing 352 n y C16 C11 WUE sing 353 n y C19 C10 WUE doub 354 n y C14 C13 WUE doub 355 n y C11 C10 WUE sing 356 n y C11 C12 WUE doub 357 n y C10 C9 WUE sing 358 n n C13 C12 WUE sing 359 n y C9 C6 WUE doub 360 n y C9 C8 WUE sing 361 n y C6 C5 WUE sing 362 n y C8 C7 WUE doub 363 n y C5 C4 WUE doub 364 n y C7 C4 WUE sing 365 n y C4 O3 WUE sing 366 n n O1 C1 WUE doub 367 n n O3 C2 WUE sing 368 n n C2 C1 WUE sing 369 n n C2 C3 WUE sing 370 n n C1 O2 WUE sing 371 n n C25 C24 WUE doub 372 n y C25 C20 WUE sing 373 n y C24 C23 WUE sing 374 n y C3 C20 WUE sing 375 n n C20 C21 WUE doub 376 n y C23 C22 WUE doub 377 n y C21 C22 WUE sing 378 n y C5 H1 WUE sing 379 n n C6 H2 WUE sing 380 n n C7 H3 WUE sing 381 n n C8 H4 WUE sing 382 n n C13 H5 WUE sing 383 n n C15 H6 WUE sing 384 n n C17 H7 WUE sing 385 n n C21 H8 WUE sing 386 n n C22 H9 WUE sing 387 n n C24 H10 WUE sing 388 n n C12 H11 WUE sing 389 n n C14 H12 WUE sing 390 n n C18 H13 WUE sing 391 n n C19 H14 WUE sing 392 n n C2 H15 WUE sing 393 n n C23 H16 WUE sing 394 n n C25 H17 WUE sing 395 n n C3 H18 WUE sing 396 n n C3 H19 WUE sing 397 n n O2 H20 WUE sing 398 n n # _atom_sites.entry_id 8RCE _atom_sites.fract_transf_matrix[1][1] 0.016057 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WUE A 1 501 1 WUE LIG . C 3 HOH A 1 601 70 HOH HOH . C 3 HOH A 2 602 7 HOH HOH . C 3 HOH A 3 603 60 HOH HOH . C 3 HOH A 4 604 66 HOH HOH . C 3 HOH A 5 605 41 HOH HOH . C 3 HOH A 6 606 57 HOH HOH . C 3 HOH A 7 607 30 HOH HOH . C 3 HOH A 8 608 69 HOH HOH . C 3 HOH A 9 609 11 HOH HOH . C 3 HOH A 10 610 19 HOH HOH . C 3 HOH A 11 611 4 HOH HOH . C 3 HOH A 12 612 44 HOH HOH . C 3 HOH A 13 613 40 HOH HOH . C 3 HOH A 14 614 16 HOH HOH . C 3 HOH A 15 615 75 HOH HOH . C 3 HOH A 16 616 23 HOH HOH . C 3 HOH A 17 617 21 HOH HOH . C 3 HOH A 18 618 22 HOH HOH . C 3 HOH A 19 619 3 HOH HOH . C 3 HOH A 20 620 71 HOH HOH . C 3 HOH A 21 621 14 HOH HOH . C 3 HOH A 22 622 25 HOH HOH . C 3 HOH A 23 623 24 HOH HOH . C 3 HOH A 24 624 6 HOH HOH . C 3 HOH A 25 625 49 HOH HOH . C 3 HOH A 26 626 18 HOH HOH . C 3 HOH A 27 627 72 HOH HOH . C 3 HOH A 28 628 20 HOH HOH . C 3 HOH A 29 629 15 HOH HOH . C 3 HOH A 30 630 5 HOH HOH . C 3 HOH A 31 631 74 HOH HOH . C 3 HOH A 32 632 56 HOH HOH . C 3 HOH A 33 633 46 HOH HOH . C 3 HOH A 34 634 47 HOH HOH . C 3 HOH A 35 635 48 HOH HOH . C 3 HOH A 36 636 62 HOH HOH . C 3 HOH A 37 637 32 HOH HOH . C 3 HOH A 38 638 9 HOH HOH . C 3 HOH A 39 639 34 HOH HOH . C 3 HOH A 40 640 36 HOH HOH . C 3 HOH A 41 641 64 HOH HOH . C 3 HOH A 42 642 12 HOH HOH . C 3 HOH A 43 643 29 HOH HOH . C 3 HOH A 44 644 38 HOH HOH . C 3 HOH A 45 645 33 HOH HOH . C 3 HOH A 46 646 8 HOH HOH . C 3 HOH A 47 647 35 HOH HOH . C 3 HOH A 48 648 51 HOH HOH . C 3 HOH A 49 649 52 HOH HOH . C 3 HOH A 50 650 59 HOH HOH . C 3 HOH A 51 651 27 HOH HOH . C 3 HOH A 52 652 37 HOH HOH . C 3 HOH A 53 653 1 HOH HOH . C 3 HOH A 54 654 54 HOH HOH . C 3 HOH A 55 655 63 HOH HOH . C 3 HOH A 56 656 67 HOH HOH . C 3 HOH A 57 657 10 HOH HOH . C 3 HOH A 58 658 58 HOH HOH . C 3 HOH A 59 659 13 HOH HOH . C 3 HOH A 60 660 17 HOH HOH . C 3 HOH A 61 661 42 HOH HOH . C 3 HOH A 62 662 26 HOH HOH . C 3 HOH A 63 663 50 HOH HOH . C 3 HOH A 64 664 73 HOH HOH . C 3 HOH A 65 665 65 HOH HOH . C 3 HOH A 66 666 53 HOH HOH . C 3 HOH A 67 667 45 HOH HOH . C 3 HOH A 68 668 39 HOH HOH . C 3 HOH A 69 669 68 HOH HOH . C 3 HOH A 70 670 43 HOH HOH . C 3 HOH A 71 671 55 HOH HOH . C 3 HOH A 72 672 61 HOH HOH . C 3 HOH A 73 673 76 HOH HOH . C 3 HOH A 74 674 2 HOH HOH . C 3 HOH A 75 675 31 HOH HOH . C 3 HOH A 76 676 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 WUE . . . B 2 9.864 33.692 18.949 1 121.85 ? C4 WUE 501 A 1 HETATM 2 C C5 WUE . . . B 2 9.271 32.902 17.978 1 127.22 ? C5 WUE 501 A 1 HETATM 3 C C6 WUE . . . B 2 9.085 33.424 16.708 1 138.69 ? C6 WUE 501 A 1 HETATM 4 C C7 WUE . . . B 2 10.23 34.998 18.658 1 121.56 ? C7 WUE 501 A 1 HETATM 5 C C8 WUE . . . B 2 10.039 35.52 17.381 1 123.13 ? C8 WUE 501 A 1 HETATM 6 C C10 WUE . . . B 2 9.267 35.247 15.049 1 137.93 ? C10 WUE 501 A 1 HETATM 7 C C13 WUE . . . B 2 6.309 37.354 15.506 1 138.57 ? C13 WUE 501 A 1 HETATM 8 C C15 WUE . . . B 2 7.014 37.453 13.219 1 152.2 ? C15 WUE 501 A 1 HETATM 9 C C17 WUE . . . B 2 8.948 36.214 12.493 1 138.55 ? C17 WUE 501 A 1 HETATM 10 C C20 WUE . . . B 2 11.928 30.543 21.905 1 114.9 ? C20 WUE 501 A 1 HETATM 11 C C21 WUE . . . B 2 13.269 30.597 21.555 1 107.9 ? C21 WUE 501 A 1 HETATM 12 C C22 WUE . . . B 2 14.111 29.495 21.681 1 102.61 ? C22 WUE 501 A 1 HETATM 13 C C24 WUE . . . B 2 12.197 28.254 22.534 1 121.89 ? C24 WUE 501 A 1 HETATM 14 C C1 WUE . . . B 2 9.045 31.085 20.455 1 87.5 ? C1 WUE 501 A 1 HETATM 15 C C11 WUE . . . B 2 8.226 36.103 14.779 1 138.7 ? C11 WUE 501 A 1 HETATM 16 C C12 WUE . . . B 2 7.353 36.481 15.787 1 135.79 ? C12 WUE 501 A 1 HETATM 17 C C14 WUE . . . B 2 6.139 37.837 14.222 1 139.38 ? C14 WUE 501 A 1 HETATM 18 C C16 WUE . . . B 2 8.065 36.588 13.493 1 142.37 ? C16 WUE 501 A 1 HETATM 19 C C18 WUE . . . B 2 9.995 35.347 12.761 1 138.75 ? C18 WUE 501 A 1 HETATM 20 C C19 WUE . . . B 2 10.142 34.87 14.042 1 142.15 ? C19 WUE 501 A 1 HETATM 21 C C2 WUE . . . B 2 10.361 31.859 20.397 1 103.29 ? C2 WUE 501 A 1 HETATM 22 C C23 WUE . . . B 2 13.56 28.322 22.172 1 108.15 ? C23 WUE 501 A 1 HETATM 23 C C25 WUE . . . B 2 11.372 29.38 22.416 1 117.63 ? C25 WUE 501 A 1 HETATM 24 C C3 WUE . . . B 2 11.104 31.768 21.734 1 115.42 ? C3 WUE 501 A 1 HETATM 25 C C9 WUE . . . B 2 9.462 34.72 16.414 1 130.64 ? C9 WUE 501 A 1 HETATM 26 O O1 WUE . . . B 2 8.136 31.628 21.08 1 76.3 ? O1 WUE 501 A 1 HETATM 27 O O2 WUE . . . B 2 8.897 30.004 19.917 1 103.57 ? O2 WUE 501 A 1 HETATM 28 O O3 WUE . . . B 2 10.055 33.219 20.197 1 113.64 ? O3 WUE 501 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #