data_8RCN
#
_model_server_result.job_id            hVMt-12LxkA26jVv3mbQFw 
_model_server_result.datetime_utc      '2025-03-29 02:06:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rcn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":3000}' 
#
_entry.id    8RCN 
#
_exptl.entry_id    8RCN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RCN 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RCN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O PRO 2341 B PRO 2341 1_555 E MG MG . B MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc2 A O SER 2342 B SER 2342 1_555 E MG MG . B MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
metalc ? metalc3 A O LEU 2344 B LEU 2344 1_555 E MG MG . B MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc4 D O4' ANP . B ANP 3000 1_555 F MG MG . B MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     8RCN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ANP B 1 3000 3000 ANP ANP . 
E 5 MG B 1 3001 3001 MG MG . 
F 5 MG B 1 3002 3002 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . D 4 213.3 172.297 242.754 1 106.97 ? PG ANP 3000 B 1 
HETATM 2 O O1G ANP . . . D 4 212.783 171.81 244.096 1 85.22 ? O1G ANP 3000 B 1 
HETATM 3 O O2G ANP . . . D 4 213.692 173.755 242.867 1 85.2 ? O2G ANP 3000 B 1 
HETATM 4 O O3G ANP . . . D 4 214.503 171.485 242.348 1 85.09 ? O3G ANP 3000 B 1 
HETATM 5 P PB ANP . . . D 4 212.504 171.814 239.959 1 94.89 ? PB ANP 3000 B 1 
HETATM 6 O O1B ANP . . . D 4 213.536 170.729 239.919 1 79.45 ? O1B ANP 3000 B 1 
HETATM 7 O O2B ANP . . . D 4 211.282 171.372 239.2 1 80.79 ? O2B ANP 3000 B 1 
HETATM 8 N N3B ANP . . . D 4 212.086 172.145 241.589 1 84.83 ? N3B ANP 3000 B 1 
HETATM 9 P PA ANP . . . D 4 212.279 174.239 238.349 1 98.98 ? PA ANP 3000 B 1 
HETATM 10 O O1A ANP . . . D 4 210.82 173.856 238.333 1 86.69 ? O1A ANP 3000 B 1 
HETATM 11 O O2A ANP . . . D 4 212.433 175.636 238.916 1 78.96 ? O2A ANP 3000 B 1 
HETATM 12 O O3A ANP . . . D 4 213.133 173.162 239.286 1 85.01 ? O3A ANP 3000 B 1 
HETATM 13 O O5' ANP . . . D 4 212.864 174.202 236.808 1 80.17 ? O5' ANP 3000 B 1 
HETATM 14 C C5' ANP . . . D 4 213.233 172.95 236.27 1 79.41 ? C5' ANP 3000 B 1 
HETATM 15 C C4' ANP . . . D 4 212.831 172.898 234.746 1 82.33 ? C4' ANP 3000 B 1 
HETATM 16 O O4' ANP . . . D 4 213.002 174.294 234.099 1 85.74 ? O4' ANP 3000 B 1 
HETATM 17 C C3' ANP . . . D 4 213.622 172.164 234.075 1 84.34 ? C3' ANP 3000 B 1 
HETATM 18 O O3' ANP . . . D 4 212.946 171.719 232.864 1 83.68 ? O3' ANP 3000 B 1 
HETATM 19 C C2' ANP . . . D 4 214.911 173.128 233.685 1 77.9 ? C2' ANP 3000 B 1 
HETATM 20 O O2' ANP . . . D 4 215.432 172.734 232.376 1 67.95 ? O2' ANP 3000 B 1 
HETATM 21 C C1' ANP . . . D 4 214.478 174.333 233.615 1 81.75 ? C1' ANP 3000 B 1 
HETATM 22 N N9 ANP . . . D 4 215.237 175.298 234.506 1 82.74 ? N9 ANP 3000 B 1 
HETATM 23 C C8 ANP . . . D 4 215.492 175.445 235.816 1 74.53 ? C8 ANP 3000 B 1 
HETATM 24 N N7 ANP . . . D 4 216.234 176.549 235.992 1 73.77 ? N7 ANP 3000 B 1 
HETATM 25 C C5 ANP . . . D 4 216.437 177.108 234.785 1 79.31 ? C5 ANP 3000 B 1 
HETATM 26 C C6 ANP . . . D 4 217.123 178.239 234.414 1 79.12 ? C6 ANP 3000 B 1 
HETATM 27 N N6 ANP . . . D 4 217.879 179.266 235.098 1 76.91 ? N6 ANP 3000 B 1 
HETATM 28 N N1 ANP . . . D 4 217.189 178.597 233.142 1 78.65 ? N1 ANP 3000 B 1 
HETATM 29 C C2 ANP . . . D 4 216.578 177.846 232.204 1 78.03 ? C2 ANP 3000 B 1 
HETATM 30 N N3 ANP . . . D 4 215.905 176.736 232.568 1 82.96 ? N3 ANP 3000 B 1 
HETATM 31 C C4 ANP . . . D 4 215.828 176.354 233.863 1 82.58 ? C4 ANP 3000 B 1 
HETATM 32 H HNB1 ANP . . . D 4 211.136 172.391 241.821 1 77.93 ? HNB1 ANP 3000 B 1 
HETATM 33 H "H5'1" ANP . . . D 4 214.282 172.816 236.38 1 78.03 ? "H5'1" ANP 3000 B 1 
HETATM 34 H "H5'2" ANP . . . D 4 212.711 172.16 236.808 1 78.63 ? "H5'2" ANP 3000 B 1 
HETATM 35 H H4' ANP . . . D 4 211.788 172.545 234.63 1 78.02 ? H4' ANP 3000 B 1 
HETATM 36 H H3' ANP . . . D 4 213.945 171.31 234.661 1 78.62 ? H3' ANP 3000 B 1 
HETATM 37 H HO3' ANP . . . D 4 213.554 171.72 232.141 1 78.47 ? HO3' ANP 3000 B 1 
HETATM 38 H H2' ANP . . . D 4 215.691 173.026 234.438 1 77 ? H2' ANP 3000 B 1 
HETATM 39 H HO2' ANP . . . D 4 215.627 171.796 232.376 1 75.96 ? HO2' ANP 3000 B 1 
HETATM 40 H H1' ANP . . . D 4 214.487 174.632 232.574 1 77.78 ? H1' ANP 3000 B 1 
HETATM 41 H H8 ANP . . . D 4 215.164 174.774 236.61 1 76.52 ? H8 ANP 3000 B 1 
HETATM 42 H HN61 ANP . . . D 4 217.739 180.257 234.852 1 74.57 ? HN61 ANP 3000 B 1 
HETATM 43 H HN62 ANP . . . D 4 218.539 179.016 235.807 1 75.48 ? HN62 ANP 3000 B 1 
HETATM 44 H H2 ANP . . . D 4 216.627 178.131 231.173 1 75.74 ? H2 ANP 3000 B 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    57 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#