data_8RDF
#
_model_server_result.job_id            c4-UjBhmIu45ihpOrtjCbQ 
_model_server_result.datetime_utc      '2025-04-04 05:09:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rdf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    8RDF 
#
_exptl.entry_id    8RDF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RDF 
_cell.length_a            60.928 
_cell.length_b            131.288 
_cell.length_c            144.964 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RDF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 150 H CYS 150 1_555 A SG CYS 206 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 B SG CYS 136 L CYS 136 1_555 B SG CYS 196 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8RDF 
_atom_sites.fract_transf_matrix[1][1]    0.016413 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007617 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006898 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 A1H09 H 1 301 301 A1H09 DPT . 
D 4 ZN L 1 301 1 ZN ZN . 
E 5 HOH H 1 401 28 HOH HOH . 
E 5 HOH H 2 402 14 HOH HOH . 
E 5 HOH H 3 403 38 HOH HOH . 
E 5 HOH H 4 404 29 HOH HOH . 
E 5 HOH H 5 405 9 HOH HOH . 
E 5 HOH H 6 406 1 HOH HOH . 
E 5 HOH H 7 407 19 HOH HOH . 
E 5 HOH H 8 408 23 HOH HOH . 
E 5 HOH H 9 409 12 HOH HOH . 
E 5 HOH H 10 410 7 HOH HOH . 
E 5 HOH H 11 411 25 HOH HOH . 
E 5 HOH H 12 412 42 HOH HOH . 
E 5 HOH H 13 413 24 HOH HOH . 
E 5 HOH H 14 414 11 HOH HOH . 
E 5 HOH H 15 415 6 HOH HOH . 
E 5 HOH H 16 416 13 HOH HOH . 
E 5 HOH H 17 417 33 HOH HOH . 
E 5 HOH H 18 418 35 HOH HOH . 
E 5 HOH H 19 419 52 HOH HOH . 
E 5 HOH H 20 420 37 HOH HOH . 
E 5 HOH H 21 421 46 HOH HOH . 
E 5 HOH H 22 422 50 HOH HOH . 
E 5 HOH H 23 423 31 HOH HOH . 
E 5 HOH H 24 424 49 HOH HOH . 
E 5 HOH H 25 425 21 HOH HOH . 
F 5 HOH L 1 401 8 HOH HOH . 
F 5 HOH L 2 402 10 HOH HOH . 
F 5 HOH L 3 403 17 HOH HOH . 
F 5 HOH L 4 404 36 HOH HOH . 
F 5 HOH L 5 405 15 HOH HOH . 
F 5 HOH L 6 406 40 HOH HOH . 
F 5 HOH L 7 407 4 HOH HOH . 
F 5 HOH L 8 408 22 HOH HOH . 
F 5 HOH L 9 409 16 HOH HOH . 
F 5 HOH L 10 410 56 HOH HOH . 
F 5 HOH L 11 411 3 HOH HOH . 
F 5 HOH L 12 412 27 HOH HOH . 
F 5 HOH L 13 413 5 HOH HOH . 
F 5 HOH L 14 414 20 HOH HOH . 
F 5 HOH L 15 415 39 HOH HOH . 
F 5 HOH L 16 416 44 HOH HOH . 
F 5 HOH L 17 417 47 HOH HOH . 
F 5 HOH L 18 418 26 HOH HOH . 
F 5 HOH L 19 419 41 HOH HOH . 
F 5 HOH L 20 420 32 HOH HOH . 
F 5 HOH L 21 421 34 HOH HOH . 
F 5 HOH L 22 422 18 HOH HOH . 
F 5 HOH L 23 423 51 HOH HOH . 
F 5 HOH L 24 424 53 HOH HOH . 
F 5 HOH L 25 425 48 HOH HOH . 
F 5 HOH L 26 426 59 HOH HOH . 
F 5 HOH L 27 427 57 HOH HOH . 
F 5 HOH L 28 428 45 HOH HOH . 
F 5 HOH L 29 429 43 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -11.964 
_atom_site.Cartn_y               26.929 
_atom_site.Cartn_z               -12.712 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        107.66 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          L 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#