data_8RDK # _model_server_result.job_id 4tk-xvfBxd6tA-CAYnAw-Q _model_server_result.datetime_utc '2024-11-07 15:40:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rdk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 8RDK # _exptl.entry_id 8RDK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 245.279 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-pyridin-4-yl-1~{H}-pyrrolo[3,2-g]isoquinoline _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RDK _cell.length_a 69.509 _cell.length_b 78.199 _cell.length_c 86.872 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RDK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 36 A HIS 477 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc2 A NE2 HIS 122 A HIS 563 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? # _chem_comp.formula 'C16 H11 N3' _chem_comp.formula_weight 245.279 _chem_comp.id YQT _chem_comp.mon_nstd_flag . _chem_comp.name 3-pyridin-4-yl-1~{H}-pyrrolo[3,2-g]isoquinoline _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 YQT doub 397 n y C1 N19 YQT sing 398 n y C2 C3 YQT sing 399 n y N19 C18 YQT doub 400 n y C5 C4 YQT doub 401 n y C5 N6 YQT sing 402 n y C3 C17 YQT doub 403 n y C3 C4 YQT sing 404 n n C18 C17 YQT sing 405 n y C4 C16 YQT sing 406 n y N6 C7 YQT sing 407 n y C16 C7 YQT doub 408 n y C16 C15 YQT sing 409 n y C7 C8 YQT sing 410 n y C15 C14 YQT doub 411 n y C8 C9 YQT doub 412 n y C14 C9 YQT sing 413 n y C14 C13 YQT sing 414 n y C9 C10 YQT sing 415 n y C13 C12 YQT doub 416 n y C10 N11 YQT doub 417 n y C12 N11 YQT sing 418 n y C1 H1 YQT sing 419 n n C2 H2 YQT sing 420 n n C5 H3 YQT sing 421 n n C12 H4 YQT sing 422 n n C13 H5 YQT sing 423 n n C15 H6 YQT sing 424 n n C17 H7 YQT sing 425 n n C18 H8 YQT sing 426 n n N6 H9 YQT sing 427 n n C8 H10 YQT sing 428 n n C10 H11 YQT sing 429 n n # _atom_sites.entry_id 8RDK _atom_sites.fract_transf_matrix[1][1] 0.014387 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 801 1 ZN ZN . C 3 MPD A 1 802 808 MPD MPD . D 4 YQT A 1 803 811 YQT 420 . E 5 HOH A 1 901 114 HOH HOH . E 5 HOH A 2 902 110 HOH HOH . E 5 HOH A 3 903 105 HOH HOH . E 5 HOH A 4 904 101 HOH HOH . E 5 HOH A 5 905 9 HOH HOH . E 5 HOH A 6 906 60 HOH HOH . E 5 HOH A 7 907 139 HOH HOH . E 5 HOH A 8 908 82 HOH HOH . E 5 HOH A 9 909 45 HOH HOH . E 5 HOH A 10 910 125 HOH HOH . E 5 HOH A 11 911 44 HOH HOH . E 5 HOH A 12 912 134 HOH HOH . E 5 HOH A 13 913 98 HOH HOH . E 5 HOH A 14 914 72 HOH HOH . E 5 HOH A 15 915 22 HOH HOH . E 5 HOH A 16 916 137 HOH HOH . E 5 HOH A 17 917 55 HOH HOH . E 5 HOH A 18 918 13 HOH HOH . E 5 HOH A 19 919 113 HOH HOH . E 5 HOH A 20 920 58 HOH HOH . E 5 HOH A 21 921 108 HOH HOH . E 5 HOH A 22 922 117 HOH HOH . E 5 HOH A 23 923 10 HOH HOH . E 5 HOH A 24 924 88 HOH HOH . E 5 HOH A 25 925 18 HOH HOH . E 5 HOH A 26 926 24 HOH HOH . E 5 HOH A 27 927 19 HOH HOH . E 5 HOH A 28 928 128 HOH HOH . E 5 HOH A 29 929 42 HOH HOH . E 5 HOH A 30 930 23 HOH HOH . E 5 HOH A 31 931 35 HOH HOH . E 5 HOH A 32 932 4 HOH HOH . E 5 HOH A 33 933 46 HOH HOH . E 5 HOH A 34 934 30 HOH HOH . E 5 HOH A 35 935 56 HOH HOH . E 5 HOH A 36 936 73 HOH HOH . E 5 HOH A 37 937 64 HOH HOH . E 5 HOH A 38 938 90 HOH HOH . E 5 HOH A 39 939 49 HOH HOH . E 5 HOH A 40 940 91 HOH HOH . E 5 HOH A 41 941 6 HOH HOH . E 5 HOH A 42 942 95 HOH HOH . E 5 HOH A 43 943 80 HOH HOH . E 5 HOH A 44 944 21 HOH HOH . E 5 HOH A 45 945 14 HOH HOH . E 5 HOH A 46 946 27 HOH HOH . E 5 HOH A 47 947 109 HOH HOH . E 5 HOH A 48 948 87 HOH HOH . E 5 HOH A 49 949 63 HOH HOH . E 5 HOH A 50 950 7 HOH HOH . E 5 HOH A 51 951 102 HOH HOH . E 5 HOH A 52 952 38 HOH HOH . E 5 HOH A 53 953 17 HOH HOH . E 5 HOH A 54 954 16 HOH HOH . E 5 HOH A 55 955 37 HOH HOH . E 5 HOH A 56 956 100 HOH HOH . E 5 HOH A 57 957 84 HOH HOH . E 5 HOH A 58 958 92 HOH HOH . E 5 HOH A 59 959 5 HOH HOH . E 5 HOH A 60 960 83 HOH HOH . E 5 HOH A 61 961 26 HOH HOH . E 5 HOH A 62 962 127 HOH HOH . E 5 HOH A 63 963 39 HOH HOH . E 5 HOH A 64 964 138 HOH HOH . E 5 HOH A 65 965 28 HOH HOH . E 5 HOH A 66 966 32 HOH HOH . E 5 HOH A 67 967 93 HOH HOH . E 5 HOH A 68 968 140 HOH HOH . E 5 HOH A 69 969 106 HOH HOH . E 5 HOH A 70 970 40 HOH HOH . E 5 HOH A 71 971 31 HOH HOH . E 5 HOH A 72 972 103 HOH HOH . E 5 HOH A 73 973 126 HOH HOH . E 5 HOH A 74 974 3 HOH HOH . E 5 HOH A 75 975 122 HOH HOH . E 5 HOH A 76 976 34 HOH HOH . E 5 HOH A 77 977 119 HOH HOH . E 5 HOH A 78 978 41 HOH HOH . E 5 HOH A 79 979 70 HOH HOH . E 5 HOH A 80 980 1 HOH HOH . E 5 HOH A 81 981 2 HOH HOH . E 5 HOH A 82 982 54 HOH HOH . E 5 HOH A 83 983 86 HOH HOH . E 5 HOH A 84 984 132 HOH HOH . E 5 HOH A 85 985 97 HOH HOH . E 5 HOH A 86 986 20 HOH HOH . E 5 HOH A 87 987 121 HOH HOH . E 5 HOH A 88 988 89 HOH HOH . E 5 HOH A 89 989 43 HOH HOH . E 5 HOH A 90 990 81 HOH HOH . E 5 HOH A 91 991 47 HOH HOH . E 5 HOH A 92 992 29 HOH HOH . E 5 HOH A 93 993 15 HOH HOH . E 5 HOH A 94 994 66 HOH HOH . E 5 HOH A 95 995 11 HOH HOH . E 5 HOH A 96 996 52 HOH HOH . E 5 HOH A 97 997 8 HOH HOH . E 5 HOH A 98 998 50 HOH HOH . E 5 HOH A 99 999 104 HOH HOH . E 5 HOH A 100 1000 51 HOH HOH . E 5 HOH A 101 1001 67 HOH HOH . E 5 HOH A 102 1002 136 HOH HOH . E 5 HOH A 103 1003 129 HOH HOH . E 5 HOH A 104 1004 124 HOH HOH . E 5 HOH A 105 1005 57 HOH HOH . E 5 HOH A 106 1006 69 HOH HOH . E 5 HOH A 107 1007 116 HOH HOH . E 5 HOH A 108 1008 120 HOH HOH . E 5 HOH A 109 1009 85 HOH HOH . E 5 HOH A 110 1010 53 HOH HOH . E 5 HOH A 111 1011 130 HOH HOH . E 5 HOH A 112 1012 94 HOH HOH . E 5 HOH A 113 1013 112 HOH HOH . E 5 HOH A 114 1014 111 HOH HOH . E 5 HOH A 115 1015 68 HOH HOH . E 5 HOH A 116 1016 65 HOH HOH . E 5 HOH A 117 1017 135 HOH HOH . E 5 HOH A 118 1018 123 HOH HOH . E 5 HOH A 119 1019 96 HOH HOH . E 5 HOH A 120 1020 48 HOH HOH . E 5 HOH A 121 1021 118 HOH HOH . E 5 HOH A 122 1022 71 HOH HOH . E 5 HOH A 123 1023 62 HOH HOH . E 5 HOH A 124 1024 131 HOH HOH . E 5 HOH A 125 1025 133 HOH HOH . E 5 HOH A 126 1026 33 HOH HOH . E 5 HOH A 127 1027 99 HOH HOH . E 5 HOH A 128 1028 79 HOH HOH . E 5 HOH A 129 1029 12 HOH HOH . E 5 HOH A 130 1030 78 HOH HOH . E 5 HOH A 131 1031 25 HOH HOH . E 5 HOH A 132 1032 115 HOH HOH . E 5 HOH A 133 1033 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YQT . . . D 4 -7.175 -13.372 9.784 1 94.54 ? C1 YQT 803 A 1 HETATM 2 C C2 YQT . . . D 4 -8.507 -13.508 10.132 1 84.41 ? C2 YQT 803 A 1 HETATM 3 C C5 YQT . . . D 4 -11.467 -13.462 10.914 1 64.76 ? C5 YQT 803 A 1 HETATM 4 C C12 YQT . . . D 4 -12.027 -8.601 15.903 1 46.85 ? C12 YQT 803 A 1 HETATM 5 C C13 YQT . . . D 4 -11.091 -9.25 15.142 1 47.09 ? C13 YQT 803 A 1 HETATM 6 C C14 YQT . . . D 4 -11.484 -10.38 14.385 1 49.85 ? C14 YQT 803 A 1 HETATM 7 C C15 YQT . . . D 4 -10.617 -10.996 13.443 1 62.24 ? C15 YQT 803 A 1 HETATM 8 C C16 YQT . . . D 4 -11.074 -11.974 12.581 1 60.42 ? C16 YQT 803 A 1 HETATM 9 C C17 YQT . . . D 4 -8.276 -11.472 11.37 1 91.19 ? C17 YQT 803 A 1 HETATM 10 C C18 YQT . . . D 4 -6.957 -11.429 10.968 1 94.99 ? C18 YQT 803 A 1 HETATM 11 C C3 YQT . . . D 4 -9.079 -12.54 10.949 1 79.75 ? C3 YQT 803 A 1 HETATM 12 C C4 YQT . . . D 4 -10.472 -12.686 11.45 1 67.9 ? C4 YQT 803 A 1 HETATM 13 N N6 YQT . . . D 4 -12.638 -13.287 11.62 1 70.34 ? N6 YQT 803 A 1 HETATM 14 C C7 YQT . . . D 4 -12.425 -12.38 12.644 1 64.45 ? C7 YQT 803 A 1 HETATM 15 C C8 YQT . . . D 4 -13.305 -11.823 13.545 1 63.49 ? C8 YQT 803 A 1 HETATM 16 C C9 YQT . . . D 4 -12.847 -10.798 14.446 1 52.35 ? C9 YQT 803 A 1 HETATM 17 C C10 YQT . . . D 4 -13.707 -10.039 15.285 1 49.8 ? C10 YQT 803 A 1 HETATM 18 N N11 YQT . . . D 4 -13.321 -8.962 15.989 1 41.24 ? N11 YQT 803 A 1 HETATM 19 N N19 YQT . . . D 4 -6.395 -12.356 10.185 1 96.57 ? N19 YQT 803 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #