data_8RDO # _model_server_result.job_id Lmo14qczf02Xud4dakbT_g _model_server_result.datetime_utc '2024-10-22 23:39:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rdo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8RDO # _exptl.entry_id 8RDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RDO _cell.length_a 53.43 _cell.length_b 53.43 _cell.length_c 209.31 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/4 0 -1 0 -1 0 0 0 0 -1 53.43 53.43 52.3275 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8RDO _atom_sites.fract_transf_matrix[1][1] 0.018716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004778 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 401 998 SAH SAH . C 3 YRD A 1 402 999 YRD LIG . D 4 GOL A 1 403 1 GOL GOL . E 4 GOL A 1 404 2 GOL GOL . F 4 GOL A 1 405 3 GOL GOL . G 5 MLT A 1 406 4 MLT MLT . H 6 HOH A 1 501 41 HOH HOH . H 6 HOH A 2 502 8 HOH HOH . H 6 HOH A 3 503 128 HOH HOH . H 6 HOH A 4 504 56 HOH HOH . H 6 HOH A 5 505 7 HOH HOH . H 6 HOH A 6 506 109 HOH HOH . H 6 HOH A 7 507 25 HOH HOH . H 6 HOH A 8 508 85 HOH HOH . H 6 HOH A 9 509 116 HOH HOH . H 6 HOH A 10 510 124 HOH HOH . H 6 HOH A 11 511 115 HOH HOH . H 6 HOH A 12 512 37 HOH HOH . H 6 HOH A 13 513 9 HOH HOH . H 6 HOH A 14 514 38 HOH HOH . H 6 HOH A 15 515 24 HOH HOH . H 6 HOH A 16 516 80 HOH HOH . H 6 HOH A 17 517 26 HOH HOH . H 6 HOH A 18 518 32 HOH HOH . H 6 HOH A 19 519 16 HOH HOH . H 6 HOH A 20 520 122 HOH HOH . H 6 HOH A 21 521 121 HOH HOH . H 6 HOH A 22 522 94 HOH HOH . H 6 HOH A 23 523 81 HOH HOH . H 6 HOH A 24 524 52 HOH HOH . H 6 HOH A 25 525 10 HOH HOH . H 6 HOH A 26 526 123 HOH HOH . H 6 HOH A 27 527 43 HOH HOH . H 6 HOH A 28 528 17 HOH HOH . H 6 HOH A 29 529 113 HOH HOH . H 6 HOH A 30 530 103 HOH HOH . H 6 HOH A 31 531 79 HOH HOH . H 6 HOH A 32 532 6 HOH HOH . H 6 HOH A 33 533 35 HOH HOH . H 6 HOH A 34 534 66 HOH HOH . H 6 HOH A 35 535 83 HOH HOH . H 6 HOH A 36 536 31 HOH HOH . H 6 HOH A 37 537 48 HOH HOH . H 6 HOH A 38 538 98 HOH HOH . H 6 HOH A 39 539 50 HOH HOH . H 6 HOH A 40 540 47 HOH HOH . H 6 HOH A 41 541 29 HOH HOH . H 6 HOH A 42 542 20 HOH HOH . H 6 HOH A 43 543 75 HOH HOH . H 6 HOH A 44 544 5 HOH HOH . H 6 HOH A 45 545 104 HOH HOH . H 6 HOH A 46 546 74 HOH HOH . H 6 HOH A 47 547 36 HOH HOH . H 6 HOH A 48 548 112 HOH HOH . H 6 HOH A 49 549 49 HOH HOH . H 6 HOH A 50 550 126 HOH HOH . H 6 HOH A 51 551 23 HOH HOH . H 6 HOH A 52 552 55 HOH HOH . H 6 HOH A 53 553 102 HOH HOH . H 6 HOH A 54 554 108 HOH HOH . H 6 HOH A 55 555 130 HOH HOH . H 6 HOH A 56 556 84 HOH HOH . H 6 HOH A 57 557 77 HOH HOH . H 6 HOH A 58 558 129 HOH HOH . H 6 HOH A 59 559 100 HOH HOH . H 6 HOH A 60 560 54 HOH HOH . H 6 HOH A 61 561 127 HOH HOH . H 6 HOH A 62 562 125 HOH HOH . H 6 HOH A 63 563 11 HOH HOH . H 6 HOH A 64 564 114 HOH HOH . H 6 HOH A 65 565 120 HOH HOH . H 6 HOH A 66 566 105 HOH HOH . H 6 HOH A 67 567 131 HOH HOH . H 6 HOH A 68 568 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 23.727 56.271 59.649 1 38.33 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 4 22.731 55.702 58.798 1 34.49 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 4 23.161 56.729 60.974 1 38.72 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 4 24.21 56.85 61.936 1 41.27 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 4 22.406 58.038 60.877 1 39.88 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 4 21.394 57.989 59.873 1 39.42 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #