data_8RDO # _model_server_result.job_id z0hxTpSw5S0ioAaPmE1MNw _model_server_result.datetime_utc '2024-10-22 23:15:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rdo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 8RDO # _exptl.entry_id 8RDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MALATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RDO _cell.length_a 53.43 _cell.length_b 53.43 _cell.length_c 209.31 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/4 0 -1 0 -1 0 0 0 0 -1 53.43 53.43 52.3275 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id MLT _chem_comp.mon_nstd_flag . _chem_comp.name D-MALATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MLT doub 250 n n C1 O2 MLT sing 251 n n C1 C2 MLT sing 252 n n C2 O3 MLT sing 253 n n C2 C3 MLT sing 254 n n C2 H2 MLT sing 255 n n O3 HO3 MLT sing 256 n n C3 C4 MLT sing 257 n n C3 H31 MLT sing 258 n n C3 H32 MLT sing 259 n n C4 O4 MLT doub 260 n n C4 O5 MLT sing 261 n n O5 HO5 MLT sing 262 n n O2 H6 MLT sing 263 n n # _atom_sites.entry_id 8RDO _atom_sites.fract_transf_matrix[1][1] 0.018716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004778 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 401 998 SAH SAH . C 3 YRD A 1 402 999 YRD LIG . D 4 GOL A 1 403 1 GOL GOL . E 4 GOL A 1 404 2 GOL GOL . F 4 GOL A 1 405 3 GOL GOL . G 5 MLT A 1 406 4 MLT MLT . H 6 HOH A 1 501 41 HOH HOH . H 6 HOH A 2 502 8 HOH HOH . H 6 HOH A 3 503 128 HOH HOH . H 6 HOH A 4 504 56 HOH HOH . H 6 HOH A 5 505 7 HOH HOH . H 6 HOH A 6 506 109 HOH HOH . H 6 HOH A 7 507 25 HOH HOH . H 6 HOH A 8 508 85 HOH HOH . H 6 HOH A 9 509 116 HOH HOH . H 6 HOH A 10 510 124 HOH HOH . H 6 HOH A 11 511 115 HOH HOH . H 6 HOH A 12 512 37 HOH HOH . H 6 HOH A 13 513 9 HOH HOH . H 6 HOH A 14 514 38 HOH HOH . H 6 HOH A 15 515 24 HOH HOH . H 6 HOH A 16 516 80 HOH HOH . H 6 HOH A 17 517 26 HOH HOH . H 6 HOH A 18 518 32 HOH HOH . H 6 HOH A 19 519 16 HOH HOH . H 6 HOH A 20 520 122 HOH HOH . H 6 HOH A 21 521 121 HOH HOH . H 6 HOH A 22 522 94 HOH HOH . H 6 HOH A 23 523 81 HOH HOH . H 6 HOH A 24 524 52 HOH HOH . H 6 HOH A 25 525 10 HOH HOH . H 6 HOH A 26 526 123 HOH HOH . H 6 HOH A 27 527 43 HOH HOH . H 6 HOH A 28 528 17 HOH HOH . H 6 HOH A 29 529 113 HOH HOH . H 6 HOH A 30 530 103 HOH HOH . H 6 HOH A 31 531 79 HOH HOH . H 6 HOH A 32 532 6 HOH HOH . H 6 HOH A 33 533 35 HOH HOH . H 6 HOH A 34 534 66 HOH HOH . H 6 HOH A 35 535 83 HOH HOH . H 6 HOH A 36 536 31 HOH HOH . H 6 HOH A 37 537 48 HOH HOH . H 6 HOH A 38 538 98 HOH HOH . H 6 HOH A 39 539 50 HOH HOH . H 6 HOH A 40 540 47 HOH HOH . H 6 HOH A 41 541 29 HOH HOH . H 6 HOH A 42 542 20 HOH HOH . H 6 HOH A 43 543 75 HOH HOH . H 6 HOH A 44 544 5 HOH HOH . H 6 HOH A 45 545 104 HOH HOH . H 6 HOH A 46 546 74 HOH HOH . H 6 HOH A 47 547 36 HOH HOH . H 6 HOH A 48 548 112 HOH HOH . H 6 HOH A 49 549 49 HOH HOH . H 6 HOH A 50 550 126 HOH HOH . H 6 HOH A 51 551 23 HOH HOH . H 6 HOH A 52 552 55 HOH HOH . H 6 HOH A 53 553 102 HOH HOH . H 6 HOH A 54 554 108 HOH HOH . H 6 HOH A 55 555 130 HOH HOH . H 6 HOH A 56 556 84 HOH HOH . H 6 HOH A 57 557 77 HOH HOH . H 6 HOH A 58 558 129 HOH HOH . H 6 HOH A 59 559 100 HOH HOH . H 6 HOH A 60 560 54 HOH HOH . H 6 HOH A 61 561 127 HOH HOH . H 6 HOH A 62 562 125 HOH HOH . H 6 HOH A 63 563 11 HOH HOH . H 6 HOH A 64 564 114 HOH HOH . H 6 HOH A 65 565 120 HOH HOH . H 6 HOH A 66 566 105 HOH HOH . H 6 HOH A 67 567 131 HOH HOH . H 6 HOH A 68 568 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLT . . . G 5 3.26 48.403 27.047 0.5 43.81 ? C1 MLT 406 A 1 HETATM 2 O O1 MLT . . . G 5 3.566 47.423 26.339 0.5 44.08 ? O1 MLT 406 A 1 HETATM 3 O O2 MLT . . . G 5 3.281 48.427 28.292 0.5 42.7 ? O2 MLT 406 A 1 HETATM 4 C C2 MLT . . . G 5 2.813 49.677 26.323 0.5 43.83 ? C2 MLT 406 A 1 HETATM 5 O O3 MLT . . . G 5 2.238 49.343 25.074 0.5 44.23 ? O3 MLT 406 A 1 HETATM 6 C C3 MLT . . . G 5 3.977 50.659 26.113 0.5 43.89 ? C3 MLT 406 A 1 HETATM 7 C C4 MLT . . . G 5 5.133 50.007 25.377 0.5 43.6 ? C4 MLT 406 A 1 HETATM 8 O O4 MLT . . . G 5 5.407 50.414 24.23 0.5 42.53 ? O4 MLT 406 A 1 HETATM 9 O O5 MLT . . . G 5 5.752 49.088 25.948 0.5 43.65 ? O5 MLT 406 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 9 #