data_8RDP
#
_model_server_result.job_id            A_w73TnTN3lrQW14xEi7wg 
_model_server_result.datetime_utc      '2025-01-10 11:47:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rdp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":202}' 
#
_entry.id    8RDP 
#
_exptl.entry_id    8RDP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              278.691 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5~{S})-3-(2-chlorophenyl)-1-oxa-2,9-diazaspiro[4.5]dec-2-ene-8,10-dione 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RDP 
_cell.length_a            56.356 
_cell.length_b            59.597 
_cell.length_c            87.875 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RDP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,L 1 1 
B,G,H,I,M 2 1 
C,J,K,N 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 25 A CYS 24 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc2 A SG CYS 28 A CYS 27 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc3 A SG CYS 91 A CYS 90 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc4 A SG CYS 94 A CYS 93 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc5 F NA NA . A NA 203 1_555 M O HOH . B HOH 307 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? 
metalc ? metalc6 B SG CYS 25 B CYS 24 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc7 B SG CYS 28 B CYS 27 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc8 B SG CYS 91 B CYS 90 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc9 B SG CYS 94 B CYS 93 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc10 C SG CYS 25 C CYS 24 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc11 C SG CYS 28 C CYS 27 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc12 C SG CYS 91 C CYS 90 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc13 C SG CYS 94 C CYS 93 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
#
_chem_comp.formula           'C13 H11 Cl N2 O3' 
_chem_comp.formula_weight    278.691 
_chem_comp.id                A1HZ7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5~{S})-3-(2-chlorophenyl)-1-oxa-2,9-diazaspiro[4.5]dec-2-ene-8,10-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 A1HZ7 doub 1 n n 
N1 C1 A1HZ7 sing 2 n n 
N1 C13 A1HZ7 sing 3 n n 
O3 C13 A1HZ7 doub 4 n n 
C1 C2 A1HZ7 sing 5 n n 
C13 C4 A1HZ7 sing 6 n n 
C2 C3 A1HZ7 sing 7 n n 
O2 C4 A1HZ7 sing 8 n n 
O2 N2 A1HZ7 sing 9 n n 
C3 C4 A1HZ7 sing 10 n n 
C4 C5 A1HZ7 sing 11 n n 
N2 C6 A1HZ7 doub 12 n n 
C5 C6 A1HZ7 sing 13 n n 
C6 C7 A1HZ7 sing 14 n n 
CL1 C12 A1HZ7 sing 15 n n 
C7 C12 A1HZ7 doub 16 n y 
C7 C8 A1HZ7 sing 17 n y 
C12 C11 A1HZ7 sing 18 n y 
C8 C9 A1HZ7 doub 19 n y 
C11 C10 A1HZ7 doub 20 n y 
C9 C10 A1HZ7 sing 21 n y 
C8 H1 A1HZ7 sing 22 n n 
C9 H2 A1HZ7 sing 23 n n 
C10 H3 A1HZ7 sing 24 n n 
C11 H4 A1HZ7 sing 25 n n 
N1 H5 A1HZ7 sing 26 n n 
C2 H7 A1HZ7 sing 27 n n 
C2 H8 A1HZ7 sing 28 n n 
C3 H9 A1HZ7 sing 29 n n 
C3 H10 A1HZ7 sing 30 n n 
C5 H11 A1HZ7 sing 31 n n 
C5 H12 A1HZ7 sing 32 n n 
#
_atom_sites.entry_id                     8RDP 
_atom_sites.fract_transf_matrix[1][1]    0.017744 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016779 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01138 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ZN A 1 201 150 ZN ZN . 
E 3 A1HZ7 A 1 202 201 A1HZ7 163 . 
F 4 NA A 1 203 1 NA NA . 
G 2 ZN B 1 201 150 ZN ZN . 
H 3 A1HZ7 B 1 202 201 A1HZ7 163 . 
I 5 PO4 B 1 203 1 PO4 PO4 . 
J 2 ZN C 1 201 150 ZN ZN . 
K 3 A1HZ7 C 1 202 201 A1HZ7 163 . 
L 6 HOH A 1 301 86 HOH HOH . 
L 6 HOH A 2 302 74 HOH HOH . 
L 6 HOH A 3 303 32 HOH HOH . 
L 6 HOH A 4 304 94 HOH HOH . 
L 6 HOH A 5 305 15 HOH HOH . 
L 6 HOH A 6 306 24 HOH HOH . 
L 6 HOH A 7 307 37 HOH HOH . 
L 6 HOH A 8 308 12 HOH HOH . 
L 6 HOH A 9 309 65 HOH HOH . 
L 6 HOH A 10 310 14 HOH HOH . 
L 6 HOH A 11 311 21 HOH HOH . 
L 6 HOH A 12 312 73 HOH HOH . 
L 6 HOH A 13 313 38 HOH HOH . 
L 6 HOH A 14 314 36 HOH HOH . 
L 6 HOH A 15 315 5 HOH HOH . 
L 6 HOH A 16 316 78 HOH HOH . 
L 6 HOH A 17 317 66 HOH HOH . 
L 6 HOH A 18 318 89 HOH HOH . 
L 6 HOH A 19 319 55 HOH HOH . 
L 6 HOH A 20 320 62 HOH HOH . 
L 6 HOH A 21 321 106 HOH HOH . 
L 6 HOH A 22 322 77 HOH HOH . 
L 6 HOH A 23 323 79 HOH HOH . 
L 6 HOH A 24 324 46 HOH HOH . 
L 6 HOH A 25 325 6 HOH HOH . 
L 6 HOH A 26 326 1 HOH HOH . 
L 6 HOH A 27 327 48 HOH HOH . 
L 6 HOH A 28 328 35 HOH HOH . 
L 6 HOH A 29 329 44 HOH HOH . 
L 6 HOH A 30 330 42 HOH HOH . 
L 6 HOH A 31 331 31 HOH HOH . 
L 6 HOH A 32 332 104 HOH HOH . 
L 6 HOH A 33 333 75 HOH HOH . 
L 6 HOH A 34 334 4 HOH HOH . 
L 6 HOH A 35 335 82 HOH HOH . 
L 6 HOH A 36 336 98 HOH HOH . 
M 6 HOH B 1 301 83 HOH HOH . 
M 6 HOH B 2 302 54 HOH HOH . 
M 6 HOH B 3 303 18 HOH HOH . 
M 6 HOH B 4 304 100 HOH HOH . 
M 6 HOH B 5 305 63 HOH HOH . 
M 6 HOH B 6 306 25 HOH HOH . 
M 6 HOH B 7 307 67 HOH HOH . 
M 6 HOH B 8 308 33 HOH HOH . 
M 6 HOH B 9 309 69 HOH HOH . 
M 6 HOH B 10 310 28 HOH HOH . 
M 6 HOH B 11 311 56 HOH HOH . 
M 6 HOH B 12 312 26 HOH HOH . 
M 6 HOH B 13 313 20 HOH HOH . 
M 6 HOH B 14 314 39 HOH HOH . 
M 6 HOH B 15 315 88 HOH HOH . 
M 6 HOH B 16 316 13 HOH HOH . 
M 6 HOH B 17 317 81 HOH HOH . 
M 6 HOH B 18 318 22 HOH HOH . 
M 6 HOH B 19 319 27 HOH HOH . 
M 6 HOH B 20 320 11 HOH HOH . 
M 6 HOH B 21 321 10 HOH HOH . 
M 6 HOH B 22 322 19 HOH HOH . 
M 6 HOH B 23 323 23 HOH HOH . 
M 6 HOH B 24 324 34 HOH HOH . 
M 6 HOH B 25 325 17 HOH HOH . 
M 6 HOH B 26 326 2 HOH HOH . 
M 6 HOH B 27 327 45 HOH HOH . 
M 6 HOH B 28 328 97 HOH HOH . 
M 6 HOH B 29 329 60 HOH HOH . 
M 6 HOH B 30 330 105 HOH HOH . 
M 6 HOH B 31 331 103 HOH HOH . 
M 6 HOH B 32 332 3 HOH HOH . 
M 6 HOH B 33 333 8 HOH HOH . 
M 6 HOH B 34 334 84 HOH HOH . 
M 6 HOH B 35 335 80 HOH HOH . 
M 6 HOH B 36 336 107 HOH HOH . 
M 6 HOH B 37 337 68 HOH HOH . 
N 6 HOH C 1 301 101 HOH HOH . 
N 6 HOH C 2 302 51 HOH HOH . 
N 6 HOH C 3 303 47 HOH HOH . 
N 6 HOH C 4 304 76 HOH HOH . 
N 6 HOH C 5 305 41 HOH HOH . 
N 6 HOH C 6 306 43 HOH HOH . 
N 6 HOH C 7 307 64 HOH HOH . 
N 6 HOH C 8 308 90 HOH HOH . 
N 6 HOH C 9 309 102 HOH HOH . 
N 6 HOH C 10 310 50 HOH HOH . 
N 6 HOH C 11 311 95 HOH HOH . 
N 6 HOH C 12 312 40 HOH HOH . 
N 6 HOH C 13 313 59 HOH HOH . 
N 6 HOH C 14 314 16 HOH HOH . 
N 6 HOH C 15 315 61 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C12 A1HZ7 . . . E 3 28.38 21.028 -10.364 1 65.8 ? C12 A1HZ7 202 A 1 
HETATM 2 O O1 A1HZ7 . . . E 3 21.606 16.173 -7.628 1 32.56 ? O1 A1HZ7 202 A 1 
HETATM 3 C C13 A1HZ7 . . . E 3 24.988 16.946 -8.325 1 39.3 ? C13 A1HZ7 202 A 1 
HETATM 4 O O2 A1HZ7 . . . E 3 26.415 18.72 -7.253 1 48.04 ? O2 A1HZ7 202 A 1 
HETATM 5 O O3 A1HZ7 . . . E 3 25.919 16.383 -8.863 1 38.22 ? O3 A1HZ7 202 A 1 
HETATM 6 C C7 A1HZ7 . . . E 3 27.003 20.674 -10.248 1 58.78 ? C7 A1HZ7 202 A 1 
HETATM 7 C C8 A1HZ7 . . . E 3 26.128 21.134 -11.233 1 61.63 ? C8 A1HZ7 202 A 1 
HETATM 8 C C9 A1HZ7 . . . E 3 26.582 21.919 -12.28 1 66.76 ? C9 A1HZ7 202 A 1 
HETATM 9 C C10 A1HZ7 . . . E 3 27.919 22.256 -12.367 1 70.14 ? C10 A1HZ7 202 A 1 
HETATM 10 C C11 A1HZ7 . . . E 3 28.818 21.822 -11.414 1 70.87 ? C11 A1HZ7 202 A 1 
HETATM 11 N N1 A1HZ7 . . . E 3 23.761 16.349 -8.233 1 35.88 ? N1 A1HZ7 202 A 1 
HETATM 12 C C1 A1HZ7 . . . E 3 22.639 16.805 -7.591 1 34.85 ? C1 A1HZ7 202 A 1 
HETATM 13 N N2 A1HZ7 . . . E 3 27.183 19.521 -8.139 1 48.62 ? N2 A1HZ7 202 A 1 
HETATM 14 C C2 A1HZ7 . . . E 3 22.712 18.126 -6.881 1 35.62 ? C2 A1HZ7 202 A 1 
HETATM 15 C C3 A1HZ7 . . . E 3 24.091 18.761 -6.813 1 38.91 ? C3 A1HZ7 202 A 1 
HETATM 16 C C4 A1HZ7 . . . E 3 25.118 18.395 -7.865 1 41.54 ? C4 A1HZ7 202 A 1 
HETATM 17 C C5 A1HZ7 . . . E 3 25.115 19.214 -9.176 1 46.72 ? C5 A1HZ7 202 A 1 
HETATM 18 C C6 A1HZ7 . . . E 3 26.488 19.819 -9.169 1 50.79 ? C6 A1HZ7 202 A 1 
HETATM 19 CL CL1 A1HZ7 . . . E 3 29.579 20.516 -9.194 1 71.83 ? CL1 A1HZ7 202 A 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           19 
#