data_8RDQ
#
_model_server_result.job_id            l7BiZOMjDp2AgVJ3PxHfeQ 
_model_server_result.datetime_utc      '2025-01-10 20:55:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rdq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":202}' 
#
_entry.id    8RDQ 
#
_exptl.entry_id    8RDQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              313.136 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5S)-3-(2,4-dichlorophenyl)-1-oxa-2,9-diazaspiro[4.5]dec-2-ene-8,10-dione 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RDQ 
_cell.length_a            56.536 
_cell.length_b            59.8 
_cell.length_c            88.01 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RDQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,J 1 1 
B,G,H,K 2 1 
C,I,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 25 A CYS 24 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc2 A SG CYS 28 A CYS 27 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc3 A SG CYS 91 A CYS 90 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc4 A SG CYS 94 A CYS 93 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc5 B SG CYS 25 B CYS 24 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc6 B SG CYS 28 B CYS 27 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc7 B SG CYS 91 B CYS 90 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc8 B SG CYS 94 B CYS 93 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc9 C SG CYS 25 C CYS 24 1_555 I ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc10 C SG CYS 28 C CYS 27 1_555 I ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc11 C SG CYS 91 C CYS 90 1_555 I ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc12 C SG CYS 94 C CYS 93 1_555 I ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
#
_chem_comp.formula           'C13 H10 Cl2 N2 O3' 
_chem_comp.formula_weight    313.136 
_chem_comp.id                YQO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5S)-3-(2,4-dichlorophenyl)-1-oxa-2,9-diazaspiro[4.5]dec-2-ene-8,10-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 YQO doub 380 n n 
N1 C1 YQO sing 381 n n 
N1 C13 YQO sing 382 n n 
O3 C13 YQO doub 383 n n 
C1 C2 YQO sing 384 n n 
C13 C4 YQO sing 385 n n 
C2 C3 YQO sing 386 n n 
C3 C4 YQO sing 387 n n 
C4 O2 YQO sing 388 n n 
C4 C5 YQO sing 389 n n 
O2 N2 YQO sing 390 n n 
N2 C6 YQO doub 391 n n 
C5 C6 YQO sing 392 n n 
C6 C7 YQO sing 393 n n 
CL2 C12 YQO sing 394 n n 
C7 C12 YQO doub 395 n y 
C7 C8 YQO sing 396 n y 
C12 C11 YQO sing 397 n y 
C8 C9 YQO doub 398 n y 
C11 C10 YQO doub 399 n y 
C9 C10 YQO sing 400 n y 
C10 CL1 YQO sing 401 n n 
C8 H1 YQO sing 402 n n 
C9 H2 YQO sing 403 n n 
C11 H3 YQO sing 404 n n 
N1 H4 YQO sing 405 n n 
C2 H6 YQO sing 406 n n 
C2 H7 YQO sing 407 n n 
C3 H8 YQO sing 408 n n 
C3 H9 YQO sing 409 n n 
C5 H10 YQO sing 410 n n 
C5 H11 YQO sing 411 n n 
#
_atom_sites.entry_id                     8RDQ 
_atom_sites.fract_transf_matrix[1][1]    0.017688 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016722 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011362 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ZN A 1 201 150 ZN ZN . 
E 3 YQO A 1 202 201 YQO 162 . 
F 4 PO4 A 1 203 1 PO4 PO4 . 
G 2 ZN B 1 201 150 ZN ZN . 
H 3 YQO B 1 202 201 YQO 162 . 
I 2 ZN C 1 201 150 ZN ZN . 
J 5 HOH A 1 301 23 HOH HOH . 
J 5 HOH A 2 302 6 HOH HOH . 
J 5 HOH A 3 303 24 HOH HOH . 
J 5 HOH A 4 304 29 HOH HOH . 
J 5 HOH A 5 305 39 HOH HOH . 
J 5 HOH A 6 306 7 HOH HOH . 
J 5 HOH A 7 307 28 HOH HOH . 
J 5 HOH A 8 308 16 HOH HOH . 
J 5 HOH A 9 309 9 HOH HOH . 
J 5 HOH A 10 310 21 HOH HOH . 
J 5 HOH A 11 311 27 HOH HOH . 
J 5 HOH A 12 312 41 HOH HOH . 
J 5 HOH A 13 313 44 HOH HOH . 
J 5 HOH A 14 314 47 HOH HOH . 
J 5 HOH A 15 315 46 HOH HOH . 
J 5 HOH A 16 316 43 HOH HOH . 
J 5 HOH A 17 317 40 HOH HOH . 
J 5 HOH A 18 318 3 HOH HOH . 
J 5 HOH A 19 319 31 HOH HOH . 
J 5 HOH A 20 320 57 HOH HOH . 
J 5 HOH A 21 321 2 HOH HOH . 
J 5 HOH A 22 322 52 HOH HOH . 
K 5 HOH B 1 301 53 HOH HOH . 
K 5 HOH B 2 302 13 HOH HOH . 
K 5 HOH B 3 303 25 HOH HOH . 
K 5 HOH B 4 304 45 HOH HOH . 
K 5 HOH B 5 305 14 HOH HOH . 
K 5 HOH B 6 306 17 HOH HOH . 
K 5 HOH B 7 307 30 HOH HOH . 
K 5 HOH B 8 308 34 HOH HOH . 
K 5 HOH B 9 309 12 HOH HOH . 
K 5 HOH B 10 310 33 HOH HOH . 
K 5 HOH B 11 311 18 HOH HOH . 
K 5 HOH B 12 312 20 HOH HOH . 
K 5 HOH B 13 313 22 HOH HOH . 
K 5 HOH B 14 314 15 HOH HOH . 
K 5 HOH B 15 315 10 HOH HOH . 
K 5 HOH B 16 316 49 HOH HOH . 
K 5 HOH B 17 317 42 HOH HOH . 
K 5 HOH B 18 318 35 HOH HOH . 
K 5 HOH B 19 319 51 HOH HOH . 
K 5 HOH B 20 320 54 HOH HOH . 
K 5 HOH B 21 321 48 HOH HOH . 
K 5 HOH B 22 322 11 HOH HOH . 
K 5 HOH B 23 323 38 HOH HOH . 
K 5 HOH B 24 324 36 HOH HOH . 
K 5 HOH B 25 325 5 HOH HOH . 
L 5 HOH C 1 301 58 HOH HOH . 
L 5 HOH C 2 302 55 HOH HOH . 
L 5 HOH C 3 303 56 HOH HOH . 
L 5 HOH C 4 304 19 HOH HOH . 
L 5 HOH C 5 305 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C12 YQO . . . H 3 21.884 18.146 30.432 1 63.84 ? C12 YQO 202 B 1 
HETATM 2 O O1 YQO . . . H 3 22.804 11.12 25.483 1 31.13 ? O1 YQO 202 B 1 
HETATM 3 C C13 YQO . . . H 3 22.624 14.555 26.277 1 39.15 ? C13 YQO 202 B 1 
HETATM 4 O O2 YQO . . . H 3 24.216 15.989 27.549 1 44.06 ? O2 YQO 202 B 1 
HETATM 5 O O3 YQO . . . H 3 22.013 15.507 25.852 1 38.9 ? O3 YQO 202 B 1 
HETATM 6 C C7 YQO . . . H 3 21.793 16.779 30.093 1 59.06 ? C7 YQO 202 B 1 
HETATM 7 C C8 YQO . . . H 3 20.839 16.002 30.747 1 62.88 ? C8 YQO 202 B 1 
HETATM 8 C C9 YQO . . . H 3 19.996 16.55 31.695 1 67.27 ? C9 YQO 202 B 1 
HETATM 9 C C10 YQO . . . H 3 20.1 17.891 31.995 1 70.75 ? C10 YQO 202 B 1 
HETATM 10 C C11 YQO . . . H 3 21.035 18.706 31.375 1 69 ? C11 YQO 202 B 1 
HETATM 11 N N1 YQO . . . H 3 22.486 13.328 25.689 1 36.79 ? N1 YQO 202 B 1 
HETATM 12 C C1 YQO . . . H 3 23.1 12.153 26.042 1 35.13 ? C1 YQO 202 B 1 
HETATM 13 N N2 YQO . . . H 3 23.59 16.822 28.505 1 46.77 ? N2 YQO 202 B 1 
HETATM 14 C C2 YQO . . . H 3 24.099 12.209 27.159 1 37.36 ? C2 YQO 202 B 1 
HETATM 15 C C3 YQO . . . H 3 24.608 13.612 27.481 1 39.95 ? C3 YQO 202 B 1 
HETATM 16 C C4 YQO . . . H 3 23.525 14.685 27.498 1 41.76 ? C4 YQO 202 B 1 
HETATM 17 C C5 YQO . . . H 3 22.667 14.696 28.762 1 46.67 ? C5 YQO 202 B 1 
HETATM 18 C C6 YQO . . . H 3 22.685 16.157 29.108 1 50.13 ? C6 YQO 202 B 1 
HETATM 19 CL CL2 YQO . . . H 3 23.037 19.2 29.677 1 72.36 ? CL2 YQO 202 B 1 
HETATM 20 CL CL1 YQO . . . H 3 19.03 18.576 33.18 1 76.16 ? CL1 YQO 202 B 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#