data_8RDS
#
_model_server_result.job_id            h1zwPaFJtDYIquiZpvqggQ 
_model_server_result.datetime_utc      '2024-11-04 22:56:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rds 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":202}' 
#
_entry.id    8RDS 
#
_exptl.entry_id    8RDS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              274.272 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5~{S})-3-(2-methoxyphenyl)-1-oxa-2,9-diazaspiro[4.5]dec-2-ene-8,10-dione 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RDS 
_cell.length_a            56.385 
_cell.length_b            59.297 
_cell.length_c            86.209 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RDS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,J 1 1 
B,G,H,K 2 1 
C,I,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 25 A CYS 24 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc2 A SG CYS 28 A CYS 27 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc3 A SG CYS 91 A CYS 90 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc4 A SG CYS 94 A CYS 93 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc5 B SG CYS 25 B CYS 24 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc6 B SG CYS 28 B CYS 27 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc7 B SG CYS 91 B CYS 90 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc8 B SG CYS 94 B CYS 93 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc9 C SG CYS 25 C CYS 24 1_555 I ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc10 C SG CYS 28 C CYS 27 1_555 I ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc11 C SG CYS 91 C CYS 90 1_555 I ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc12 C SG CYS 94 C CYS 93 1_555 I ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
#
_chem_comp.formula           'C14 H14 N2 O4' 
_chem_comp.formula_weight    274.272 
_chem_comp.id                A1HZ6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5~{S})-3-(2-methoxyphenyl)-1-oxa-2,9-diazaspiro[4.5]dec-2-ene-8,10-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C9 A1HZ6 doub 1 n y 
C10 C11 A1HZ6 sing 2 n y 
C9 C8 A1HZ6 sing 3 n y 
C11 C12 A1HZ6 doub 4 n y 
C8 C7 A1HZ6 doub 5 n y 
C12 C7 A1HZ6 sing 6 n y 
C12 O2 A1HZ6 sing 7 n n 
C7 C6 A1HZ6 sing 8 n n 
C13 O2 A1HZ6 sing 9 n n 
C6 C5 A1HZ6 sing 10 n n 
C6 N2 A1HZ6 doub 11 n n 
C5 C4 A1HZ6 sing 12 n n 
O4 C14 A1HZ6 doub 13 n n 
C14 N1 A1HZ6 sing 14 n n 
C14 C4 A1HZ6 sing 15 n n 
N2 O3 A1HZ6 sing 16 n n 
N1 C1 A1HZ6 sing 17 n n 
C4 O3 A1HZ6 sing 18 n n 
C4 C3 A1HZ6 sing 19 n n 
C1 O1 A1HZ6 doub 20 n n 
C1 C2 A1HZ6 sing 21 n n 
C2 C3 A1HZ6 sing 22 n n 
C5 H1 A1HZ6 sing 23 n n 
C5 H2 A1HZ6 sing 24 n n 
C8 H3 A1HZ6 sing 25 n n 
C10 H4 A1HZ6 sing 26 n n 
C13 H5 A1HZ6 sing 27 n n 
C13 H6 A1HZ6 sing 28 n n 
C13 H7 A1HZ6 sing 29 n n 
C3 H9 A1HZ6 sing 30 n n 
C3 H10 A1HZ6 sing 31 n n 
C9 H11 A1HZ6 sing 32 n n 
C11 H12 A1HZ6 sing 33 n n 
N1 H13 A1HZ6 sing 34 n n 
C2 H14 A1HZ6 sing 35 n n 
C2 H15 A1HZ6 sing 36 n n 
#
_atom_sites.entry_id                     8RDS 
_atom_sites.fract_transf_matrix[1][1]    0.017735 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016864 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0116 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ZN A 1 201 150 ZN ZN . 
E 3 A1HZ6 A 1 202 201 A1HZ6 098 . 
F 4 PO4 A 1 203 1 PO4 PO4 . 
G 2 ZN B 1 201 150 ZN ZN . 
H 3 A1HZ6 B 1 202 201 A1HZ6 098 . 
I 2 ZN C 1 201 150 ZN ZN . 
J 5 HOH A 1 301 2 HOH HOH . 
J 5 HOH A 2 302 25 HOH HOH . 
J 5 HOH A 3 303 8 HOH HOH . 
J 5 HOH A 4 304 13 HOH HOH . 
J 5 HOH A 5 305 10 HOH HOH . 
J 5 HOH A 6 306 1 HOH HOH . 
J 5 HOH A 7 307 36 HOH HOH . 
J 5 HOH A 8 308 19 HOH HOH . 
J 5 HOH A 9 309 38 HOH HOH . 
J 5 HOH A 10 310 27 HOH HOH . 
J 5 HOH A 11 311 43 HOH HOH . 
J 5 HOH A 12 312 35 HOH HOH . 
J 5 HOH A 13 313 15 HOH HOH . 
J 5 HOH A 14 314 9 HOH HOH . 
J 5 HOH A 15 315 14 HOH HOH . 
J 5 HOH A 16 316 23 HOH HOH . 
J 5 HOH A 17 317 7 HOH HOH . 
J 5 HOH A 18 318 40 HOH HOH . 
J 5 HOH A 19 319 45 HOH HOH . 
K 5 HOH B 1 301 28 HOH HOH . 
K 5 HOH B 2 302 4 HOH HOH . 
K 5 HOH B 3 303 20 HOH HOH . 
K 5 HOH B 4 304 17 HOH HOH . 
K 5 HOH B 5 305 42 HOH HOH . 
K 5 HOH B 6 306 41 HOH HOH . 
K 5 HOH B 7 307 12 HOH HOH . 
K 5 HOH B 8 308 22 HOH HOH . 
K 5 HOH B 9 309 33 HOH HOH . 
K 5 HOH B 10 310 21 HOH HOH . 
K 5 HOH B 11 311 44 HOH HOH . 
K 5 HOH B 12 312 34 HOH HOH . 
K 5 HOH B 13 313 24 HOH HOH . 
K 5 HOH B 14 314 32 HOH HOH . 
K 5 HOH B 15 315 3 HOH HOH . 
K 5 HOH B 16 316 48 HOH HOH . 
K 5 HOH B 17 317 29 HOH HOH . 
K 5 HOH B 18 318 46 HOH HOH . 
K 5 HOH B 19 319 47 HOH HOH . 
L 5 HOH C 1 301 6 HOH HOH . 
L 5 HOH C 2 302 39 HOH HOH . 
L 5 HOH C 3 303 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 A1HZ6 . . . E 3 25.127 18.544 -9.005 1 53.97 ? C5 A1HZ6 202 A 1 
HETATM 2 C C7 A1HZ6 . . . E 3 27.131 19.616 -10.34 1 61.15 ? C7 A1HZ6 202 A 1 
HETATM 3 C C8 A1HZ6 . . . E 3 26.329 19.836 -11.469 1 63.36 ? C8 A1HZ6 202 A 1 
HETATM 4 C C10 A1HZ6 . . . E 3 28.147 20.891 -12.602 1 66.99 ? C10 A1HZ6 202 A 1 
HETATM 5 C C13 A1HZ6 . . . E 3 30.626 19.807 -9.335 1 67.92 ? C13 A1HZ6 202 A 1 
HETATM 6 O O1 A1HZ6 . . . E 3 21.632 15.48 -7.474 1 45.81 ? O1 A1HZ6 202 A 1 
HETATM 7 N N2 A1HZ6 . . . E 3 27.299 18.609 -8.158 1 55.46 ? N2 A1HZ6 202 A 1 
HETATM 8 C C3 A1HZ6 . . . E 3 24.19 17.951 -6.709 1 48.66 ? C3 A1HZ6 202 A 1 
HETATM 9 O O4 A1HZ6 . . . E 3 25.983 15.516 -8.68 1 49.78 ? O4 A1HZ6 202 A 1 
HETATM 10 C C9 A1HZ6 . . . E 3 26.836 20.469 -12.592 1 65.65 ? C9 A1HZ6 202 A 1 
HETATM 11 C C11 A1HZ6 . . . E 3 28.962 20.686 -11.509 1 66.76 ? C11 A1HZ6 202 A 1 
HETATM 12 C C12 A1HZ6 . . . E 3 28.467 20.048 -10.37 1 64.43 ? C12 A1HZ6 202 A 1 
HETATM 13 C C14 A1HZ6 . . . E 3 25.04 16.141 -8.221 1 49.96 ? C14 A1HZ6 202 A 1 
HETATM 14 N N1 A1HZ6 . . . E 3 23.794 15.57 -8.116 1 48.11 ? N1 A1HZ6 202 A 1 
HETATM 15 C C4 A1HZ6 . . . E 3 25.192 17.6 -7.801 1 50.12 ? C4 A1HZ6 202 A 1 
HETATM 16 C C2 A1HZ6 . . . E 3 22.768 17.524 -7.048 1 46.64 ? C2 A1HZ6 202 A 1 
HETATM 17 C C1 A1HZ6 . . . E 3 22.665 16.117 -7.546 1 46.5 ? C1 A1HZ6 202 A 1 
HETATM 18 O O3 A1HZ6 . . . E 3 26.537 17.837 -7.246 1 53.48 ? O3 A1HZ6 202 A 1 
HETATM 19 C C6 A1HZ6 . . . E 3 26.571 18.936 -9.16 1 56.27 ? C6 A1HZ6 202 A 1 
HETATM 20 O O2 A1HZ6 . . . E 3 29.202 19.818 -9.238 1 66.13 ? O2 A1HZ6 202 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#