data_8RDT
#
_model_server_result.job_id            UWXbLltd8ufIz_CqqeA9Jw 
_model_server_result.datetime_utc      '2024-11-23 03:19:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rdt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":203}' 
#
_entry.id    8RDT 
#
_exptl.entry_id    8RDT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RDT 
_cell.length_a            56.441 
_cell.length_b            59.488 
_cell.length_c            88.11 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RDT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,J 1 1 
B,G,H,K 2 1 
C,I,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 25 A CYS 24 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc2 A SG CYS 28 A CYS 27 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc3 A SG CYS 91 A CYS 90 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc4 A SG CYS 94 A CYS 93 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc5 B SG CYS 25 B CYS 24 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc6 B SG CYS 28 B CYS 27 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc7 B SG CYS 91 B CYS 90 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc8 B SG CYS 94 B CYS 93 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc9 C SG CYS 25 C CYS 24 1_555 I ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc10 C SG CYS 28 C CYS 27 1_555 I ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc11 C SG CYS 91 C CYS 90 1_555 I ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc12 C SG CYS 94 C CYS 93 1_555 I ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 304 n n 
P O2 PO4 sing 305 n n 
P O3 PO4 sing 306 n n 
P O4 PO4 sing 307 n n 
#
_atom_sites.entry_id                     8RDT 
_atom_sites.fract_transf_matrix[1][1]    0.017718 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01681 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011349 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ZN A 1 201 150 ZN ZN . 
E 3 A1HZ2 A 1 202 201 A1HZ2 069 . 
F 4 PO4 A 1 203 1 PO4 PO4 . 
G 2 ZN B 1 201 150 ZN ZN . 
H 3 A1HZ2 B 1 202 201 A1HZ2 069 . 
I 2 ZN C 1 201 150 ZN ZN . 
J 5 HOH A 1 301 23 HOH HOH . 
J 5 HOH A 2 302 29 HOH HOH . 
J 5 HOH A 3 303 33 HOH HOH . 
J 5 HOH A 4 304 55 HOH HOH . 
J 5 HOH A 5 305 19 HOH HOH . 
J 5 HOH A 6 306 22 HOH HOH . 
J 5 HOH A 7 307 26 HOH HOH . 
J 5 HOH A 8 308 51 HOH HOH . 
J 5 HOH A 9 309 10 HOH HOH . 
J 5 HOH A 10 310 32 HOH HOH . 
J 5 HOH A 11 311 48 HOH HOH . 
J 5 HOH A 12 312 59 HOH HOH . 
J 5 HOH A 13 313 39 HOH HOH . 
J 5 HOH A 14 314 34 HOH HOH . 
J 5 HOH A 15 315 6 HOH HOH . 
J 5 HOH A 16 316 58 HOH HOH . 
J 5 HOH A 17 317 53 HOH HOH . 
J 5 HOH A 18 318 31 HOH HOH . 
J 5 HOH A 19 319 5 HOH HOH . 
J 5 HOH A 20 320 3 HOH HOH . 
J 5 HOH A 21 321 63 HOH HOH . 
J 5 HOH A 22 322 57 HOH HOH . 
K 5 HOH B 1 301 15 HOH HOH . 
K 5 HOH B 2 302 7 HOH HOH . 
K 5 HOH B 3 303 20 HOH HOH . 
K 5 HOH B 4 304 61 HOH HOH . 
K 5 HOH B 5 305 56 HOH HOH . 
K 5 HOH B 6 306 67 HOH HOH . 
K 5 HOH B 7 307 14 HOH HOH . 
K 5 HOH B 8 308 21 HOH HOH . 
K 5 HOH B 9 309 12 HOH HOH . 
K 5 HOH B 10 310 28 HOH HOH . 
K 5 HOH B 11 311 45 HOH HOH . 
K 5 HOH B 12 312 60 HOH HOH . 
K 5 HOH B 13 313 40 HOH HOH . 
K 5 HOH B 14 314 54 HOH HOH . 
K 5 HOH B 15 315 38 HOH HOH . 
K 5 HOH B 16 316 36 HOH HOH . 
K 5 HOH B 17 317 65 HOH HOH . 
K 5 HOH B 18 318 44 HOH HOH . 
K 5 HOH B 19 319 35 HOH HOH . 
K 5 HOH B 20 320 37 HOH HOH . 
K 5 HOH B 21 321 62 HOH HOH . 
K 5 HOH B 22 322 13 HOH HOH . 
K 5 HOH B 23 323 47 HOH HOH . 
K 5 HOH B 24 324 1 HOH HOH . 
K 5 HOH B 25 325 8 HOH HOH . 
K 5 HOH B 26 326 17 HOH HOH . 
K 5 HOH B 27 327 52 HOH HOH . 
K 5 HOH B 28 328 18 HOH HOH . 
K 5 HOH B 29 329 69 HOH HOH . 
K 5 HOH B 30 330 68 HOH HOH . 
K 5 HOH B 31 331 49 HOH HOH . 
L 5 HOH C 1 301 42 HOH HOH . 
L 5 HOH C 2 302 66 HOH HOH . 
L 5 HOH C 3 303 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . F 4 24.064 12.718 12.194 0.8 46.48 ? P PO4 203 A 1 
HETATM 2 O O1 PO4 . . . F 4 23.688 11.849 11.01 0.8 62.32 ? O1 PO4 203 A 1 
HETATM 3 O O2 PO4 . . . F 4 23.607 14.171 11.941 0.8 50.89 ? O2 PO4 203 A 1 
HETATM 4 O O3 PO4 . . . F 4 25.572 12.688 12.398 0.8 42.84 ? O3 PO4 203 A 1 
HETATM 5 O O4 PO4 . . . F 4 23.351 12.184 13.45 0.8 52.06 ? O4 PO4 203 A 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#