data_8REO
#
_model_server_result.job_id            yJ8gZEA9pncU-ZWGUV-Few 
_model_server_result.datetime_utc      '2025-01-10 08:14:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8reo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    8REO 
#
_exptl.entry_id    8REO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.182 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYURIDINE 5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8REO 
_cell.length_a            54.094 
_cell.length_b            115.964 
_cell.length_c            140.527 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8REO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 I N N 
? 2 M N N 
? 2 Q N N 
#
_chem_comp.formula           'C9 H13 N2 O8 P' 
_chem_comp.formula_weight    308.182 
_chem_comp.id                UMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYURIDINE 5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DUMP 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 UMP sing 564 n n 
N1 C6 UMP sing 565 n n 
N1 C1' UMP sing 566 n n 
C2 N3 UMP sing 567 n n 
C2 O2 UMP doub 568 n n 
N3 C4 UMP sing 569 n n 
N3 HN3 UMP sing 570 n n 
C4 C5 UMP sing 571 n n 
C4 O4 UMP doub 572 n n 
C5 C6 UMP doub 573 n n 
C5 H5 UMP sing 574 n n 
C6 H6 UMP sing 575 n n 
C1' C2' UMP sing 576 n n 
C1' O4' UMP sing 577 n n 
C1' H1' UMP sing 578 n n 
C2' C3' UMP sing 579 n n 
C2' H2' UMP sing 580 n n 
C2' "H2''" UMP sing 581 n n 
C3' C4' UMP sing 582 n n 
C3' O3' UMP sing 583 n n 
C3' H3' UMP sing 584 n n 
C4' O4' UMP sing 585 n n 
C4' C5' UMP sing 586 n n 
C4' H4' UMP sing 587 n n 
O3' HO3' UMP sing 588 n n 
C5' O5' UMP sing 589 n n 
C5' H5' UMP sing 590 n n 
C5' "H5''" UMP sing 591 n n 
O5' P UMP sing 592 n n 
P OP1 UMP doub 593 n n 
P OP2 UMP sing 594 n n 
P OP3 UMP sing 595 n n 
OP2 HOP2 UMP sing 596 n n 
OP3 HOP3 UMP sing 597 n n 
#
_atom_sites.entry_id                     8REO 
_atom_sites.fract_transf_matrix[1][1]    0.018486 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008623 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007116 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 UMP A 1 301 301 UMP UMP . 
F 3 P6G A 1 302 302 P6G P6G . 
G 4 FDA A 1 303 2 FDA FDA . 
H 5 PG4 B 1 301 302 PG4 PG4 . 
I 2 UMP B 1 302 304 UMP UMP . 
J 6 PEG B 1 303 305 PEG PEG . 
K 7 PGE B 1 304 306 PGE PGE . 
L 4 FDA B 1 305 4 FDA FDA . 
M 2 UMP C 1 301 301 UMP UMP . 
N 6 PEG C 1 302 302 PEG PEG . 
O 4 FDA C 1 303 1 FDA FDA . 
P 6 PEG C 1 304 5 PEG PEG . 
Q 2 UMP D 1 301 301 UMP UMP . 
R 5 PG4 D 1 302 302 PG4 PG4 . 
S 4 FDA D 1 303 3 FDA FDA . 
T 8 HOH A 1 401 10 HOH HOH . 
T 8 HOH A 2 402 46 HOH HOH . 
T 8 HOH A 3 403 33 HOH HOH . 
T 8 HOH A 4 404 21 HOH HOH . 
T 8 HOH A 5 405 66 HOH HOH . 
T 8 HOH A 6 406 50 HOH HOH . 
T 8 HOH A 7 407 104 HOH HOH . 
T 8 HOH A 8 408 65 HOH HOH . 
T 8 HOH A 9 409 28 HOH HOH . 
T 8 HOH A 10 410 97 HOH HOH . 
T 8 HOH A 11 411 70 HOH HOH . 
T 8 HOH A 12 412 24 HOH HOH . 
T 8 HOH A 13 413 30 HOH HOH . 
T 8 HOH A 14 414 39 HOH HOH . 
T 8 HOH A 15 415 16 HOH HOH . 
T 8 HOH A 16 416 26 HOH HOH . 
T 8 HOH A 17 417 73 HOH HOH . 
T 8 HOH A 18 418 88 HOH HOH . 
T 8 HOH A 19 419 41 HOH HOH . 
T 8 HOH A 20 420 96 HOH HOH . 
T 8 HOH A 21 421 72 HOH HOH . 
U 8 HOH B 1 401 27 HOH HOH . 
U 8 HOH B 2 402 94 HOH HOH . 
U 8 HOH B 3 403 9 HOH HOH . 
U 8 HOH B 4 404 3 HOH HOH . 
U 8 HOH B 5 405 77 HOH HOH . 
U 8 HOH B 6 406 95 HOH HOH . 
U 8 HOH B 7 407 89 HOH HOH . 
U 8 HOH B 8 408 35 HOH HOH . 
U 8 HOH B 9 409 57 HOH HOH . 
U 8 HOH B 10 410 55 HOH HOH . 
U 8 HOH B 11 411 106 HOH HOH . 
U 8 HOH B 12 412 43 HOH HOH . 
U 8 HOH B 13 413 32 HOH HOH . 
U 8 HOH B 14 414 108 HOH HOH . 
U 8 HOH B 15 415 4 HOH HOH . 
U 8 HOH B 16 416 18 HOH HOH . 
U 8 HOH B 17 417 61 HOH HOH . 
U 8 HOH B 18 418 105 HOH HOH . 
U 8 HOH B 19 419 11 HOH HOH . 
U 8 HOH B 20 420 12 HOH HOH . 
U 8 HOH B 21 421 2 HOH HOH . 
U 8 HOH B 22 422 84 HOH HOH . 
U 8 HOH B 23 423 75 HOH HOH . 
U 8 HOH B 24 424 93 HOH HOH . 
U 8 HOH B 25 425 71 HOH HOH . 
U 8 HOH B 26 426 74 HOH HOH . 
V 8 HOH C 1 401 48 HOH HOH . 
V 8 HOH C 2 402 100 HOH HOH . 
V 8 HOH C 3 403 76 HOH HOH . 
V 8 HOH C 4 404 8 HOH HOH . 
V 8 HOH C 5 405 92 HOH HOH . 
V 8 HOH C 6 406 6 HOH HOH . 
V 8 HOH C 7 407 5 HOH HOH . 
V 8 HOH C 8 408 56 HOH HOH . 
V 8 HOH C 9 409 98 HOH HOH . 
V 8 HOH C 10 410 99 HOH HOH . 
V 8 HOH C 11 411 63 HOH HOH . 
V 8 HOH C 12 412 78 HOH HOH . 
V 8 HOH C 13 413 54 HOH HOH . 
V 8 HOH C 14 414 15 HOH HOH . 
V 8 HOH C 15 415 14 HOH HOH . 
V 8 HOH C 16 416 86 HOH HOH . 
V 8 HOH C 17 417 91 HOH HOH . 
V 8 HOH C 18 418 82 HOH HOH . 
V 8 HOH C 19 419 85 HOH HOH . 
V 8 HOH C 20 420 79 HOH HOH . 
V 8 HOH C 21 421 23 HOH HOH . 
V 8 HOH C 22 422 34 HOH HOH . 
V 8 HOH C 23 423 83 HOH HOH . 
V 8 HOH C 24 424 17 HOH HOH . 
V 8 HOH C 25 425 53 HOH HOH . 
V 8 HOH C 26 426 103 HOH HOH . 
V 8 HOH C 27 427 67 HOH HOH . 
V 8 HOH C 28 428 36 HOH HOH . 
V 8 HOH C 29 429 81 HOH HOH . 
V 8 HOH C 30 430 52 HOH HOH . 
V 8 HOH C 31 431 45 HOH HOH . 
V 8 HOH C 32 432 38 HOH HOH . 
W 8 HOH D 1 401 7 HOH HOH . 
W 8 HOH D 2 402 1 HOH HOH . 
W 8 HOH D 3 403 40 HOH HOH . 
W 8 HOH D 4 404 80 HOH HOH . 
W 8 HOH D 5 405 22 HOH HOH . 
W 8 HOH D 6 406 20 HOH HOH . 
W 8 HOH D 7 407 101 HOH HOH . 
W 8 HOH D 8 408 25 HOH HOH . 
W 8 HOH D 9 409 49 HOH HOH . 
W 8 HOH D 10 410 31 HOH HOH . 
W 8 HOH D 11 411 68 HOH HOH . 
W 8 HOH D 12 412 58 HOH HOH . 
W 8 HOH D 13 413 13 HOH HOH . 
W 8 HOH D 14 414 51 HOH HOH . 
W 8 HOH D 15 415 60 HOH HOH . 
W 8 HOH D 16 416 64 HOH HOH . 
W 8 HOH D 17 417 59 HOH HOH . 
W 8 HOH D 18 418 29 HOH HOH . 
W 8 HOH D 19 419 87 HOH HOH . 
W 8 HOH D 20 420 19 HOH HOH . 
W 8 HOH D 21 421 42 HOH HOH . 
W 8 HOH D 22 422 47 HOH HOH . 
W 8 HOH D 23 423 62 HOH HOH . 
W 8 HOH D 24 424 69 HOH HOH . 
W 8 HOH D 25 425 90 HOH HOH . 
W 8 HOH D 26 426 107 HOH HOH . 
W 8 HOH D 27 427 37 HOH HOH . 
W 8 HOH D 28 428 102 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UMP . . . E 2 -2.079 -8.127 -10.835 1 34.51 ? N1 UMP 301 A 1 
HETATM 2 C C2 UMP . . . E 2 -2.219 -7.309 -11.936 1 34.08 ? C2 UMP 301 A 1 
HETATM 3 N N3 UMP . . . E 2 -3.333 -6.513 -11.918 1 33.55 ? N3 UMP 301 A 1 
HETATM 4 C C4 UMP . . . E 2 -4.303 -6.448 -10.941 1 33.53 ? C4 UMP 301 A 1 
HETATM 5 C C5 UMP . . . E 2 -4.093 -7.338 -9.834 1 33.87 ? C5 UMP 301 A 1 
HETATM 6 C C6 UMP . . . E 2 -3.006 -8.126 -9.82 1 34.17 ? C6 UMP 301 A 1 
HETATM 7 O O2 UMP . . . E 2 -1.421 -7.304 -12.87 1 34.24 ? O2 UMP 301 A 1 
HETATM 8 O O4 UMP . . . E 2 -5.252 -5.676 -11.094 1 32.99 ? O4 UMP 301 A 1 
HETATM 9 C C1' UMP . . . E 2 -0.831 -8.907 -10.731 1 35.44 ? C1' UMP 301 A 1 
HETATM 10 C C2' UMP . . . E 2 0.38 -8.032 -10.407 1 35.83 ? C2' UMP 301 A 1 
HETATM 11 C C3' UMP . . . E 2 1.151 -8.82 -9.357 1 36.21 ? C3' UMP 301 A 1 
HETATM 12 C C4' UMP . . . E 2 0.054 -9.627 -8.669 1 36.56 ? C4' UMP 301 A 1 
HETATM 13 O O3' UMP . . . E 2 2.046 -9.719 -10.001 1 36.36 ? O3' UMP 301 A 1 
HETATM 14 O O4' UMP . . . E 2 -0.975 -9.842 -9.667 1 36.15 ? O4' UMP 301 A 1 
HETATM 15 C C5' UMP . . . E 2 -0.537 -8.976 -7.442 1 36.74 ? C5' UMP 301 A 1 
HETATM 16 O O5' UMP . . . E 2 -0.825 -7.586 -7.727 1 37.3 ? O5' UMP 301 A 1 
HETATM 17 P P UMP . . . E 2 -1.669 -6.723 -6.66 1 38.27 ? P UMP 301 A 1 
HETATM 18 O OP1 UMP . . . E 2 -0.958 -6.925 -5.323 1 38.19 ? OP1 UMP 301 A 1 
HETATM 19 O OP2 UMP . . . E 2 -1.591 -5.277 -7.151 1 38.12 ? OP2 UMP 301 A 1 
HETATM 20 O OP3 UMP . . . E 2 -3.088 -7.286 -6.692 1 37.88 ? OP3 UMP 301 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#