data_8RFM # _model_server_result.job_id e37WnLJMr2MwqG9L3nkvog _model_server_result.datetime_utc '2024-11-29 17:11:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rfm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 8RFM # _exptl.entry_id 8RFM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RFM _cell.length_a 61.06 _cell.length_b 106.79 _cell.length_c 196.01 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RFM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 H N N ? 2 J N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 8RFM _atom_sites.fract_transf_matrix[1][1] 0.016377 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009364 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 301 1274 FAD FAD . F 3 NAD A 1 302 1275 NAD NAD . G 2 FAD B 1 301 1274 FAD FAD . H 2 FAD C 1 301 1274 FAD FAD . I 3 NAD C 1 302 1275 NAD NAD . J 2 FAD D 1 301 1274 FAD FAD . K 4 HOH A 1 401 4 HOH HOH . K 4 HOH A 2 402 17 HOH HOH . L 4 HOH B 1 401 3 HOH HOH . M 4 HOH C 1 401 9 HOH HOH . M 4 HOH C 2 402 6 HOH HOH . M 4 HOH C 3 403 13 HOH HOH . M 4 HOH C 4 404 7 HOH HOH . M 4 HOH C 5 405 8 HOH HOH . M 4 HOH C 6 406 10 HOH HOH . M 4 HOH C 7 407 5 HOH HOH . M 4 HOH C 8 408 14 HOH HOH . M 4 HOH C 9 409 2 HOH HOH . N 4 HOH D 1 401 11 HOH HOH . N 4 HOH D 2 402 1 HOH HOH . N 4 HOH D 3 403 15 HOH HOH . N 4 HOH D 4 404 16 HOH HOH . N 4 HOH D 5 405 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 2 20.17 -31.253 -46.072 1 55.87 ? PA FAD 301 A 1 HETATM 2 O O1A FAD . . . E 2 20.021 -29.915 -45.446 1 52.81 ? O1A FAD 301 A 1 HETATM 3 O O2A FAD . . . E 2 21.559 -31.781 -46.102 1 53.4 ? O2A FAD 301 A 1 HETATM 4 O O5B FAD . . . E 2 19.559 -31.298 -47.554 1 61.5 ? O5B FAD 301 A 1 HETATM 5 C C5B FAD . . . E 2 19.899 -32.431 -48.437 1 60.42 ? C5B FAD 301 A 1 HETATM 6 C C4B FAD . . . E 2 20.429 -31.954 -49.779 1 61.89 ? C4B FAD 301 A 1 HETATM 7 O O4B FAD . . . E 2 19.39 -31.241 -50.496 1 60.07 ? O4B FAD 301 A 1 HETATM 8 C C3B FAD . . . E 2 21.639 -31.003 -49.746 1 59.33 ? C3B FAD 301 A 1 HETATM 9 O O3B FAD . . . E 2 22.537 -31.262 -50.814 1 53.23 ? O3B FAD 301 A 1 HETATM 10 C C2B FAD . . . E 2 20.986 -29.63 -49.93 1 58.86 ? C2B FAD 301 A 1 HETATM 11 O O2B FAD . . . E 2 21.856 -28.621 -50.396 1 55.43 ? O2B FAD 301 A 1 HETATM 12 C C1B FAD . . . E 2 19.916 -29.999 -50.955 1 59.89 ? C1B FAD 301 A 1 HETATM 13 N N9A FAD . . . E 2 18.835 -29.021 -51.118 1 60.06 ? N9A FAD 301 A 1 HETATM 14 C C8A FAD . . . E 2 18.488 -27.996 -50.275 1 58.26 ? C8A FAD 301 A 1 HETATM 15 N N7A FAD . . . E 2 17.513 -27.245 -50.728 1 60.88 ? N7A FAD 301 A 1 HETATM 16 C C5A FAD . . . E 2 17.212 -27.796 -51.967 1 63.59 ? C5A FAD 301 A 1 HETATM 17 C C6A FAD . . . E 2 16.269 -27.446 -52.953 1 58.95 ? C6A FAD 301 A 1 HETATM 18 N N6A FAD . . . E 2 15.458 -26.399 -52.845 1 56.13 ? N6A FAD 301 A 1 HETATM 19 N N1A FAD . . . E 2 16.232 -28.193 -54.088 1 59.44 ? N1A FAD 301 A 1 HETATM 20 C C2A FAD . . . E 2 17.063 -29.237 -54.193 1 60.71 ? C2A FAD 301 A 1 HETATM 21 N N3A FAD . . . E 2 17.985 -29.661 -53.333 1 64.08 ? N3A FAD 301 A 1 HETATM 22 C C4A FAD . . . E 2 18.017 -28.893 -52.223 1 65.72 ? C4A FAD 301 A 1 HETATM 23 N N1 FAD . . . E 2 18.21 -39.786 -39.365 1 50.08 ? N1 FAD 301 A 1 HETATM 24 C C2 FAD . . . E 2 17.573 -40.978 -39.198 1 54.87 ? C2 FAD 301 A 1 HETATM 25 O O2 FAD . . . E 2 17.203 -41.656 -40.165 1 49.25 ? O2 FAD 301 A 1 HETATM 26 N N3 FAD . . . E 2 17.382 -41.45 -37.9 1 57.82 ? N3 FAD 301 A 1 HETATM 27 C C4 FAD . . . E 2 17.806 -40.843 -36.735 1 53.48 ? C4 FAD 301 A 1 HETATM 28 O O4 FAD . . . E 2 17.575 -41.319 -35.643 1 63.69 ? O4 FAD 301 A 1 HETATM 29 C C4X FAD . . . E 2 18.419 -39.611 -36.925 1 47.43 ? C4X FAD 301 A 1 HETATM 30 N N5 FAD . . . E 2 18.814 -38.96 -35.856 1 45.85 ? N5 FAD 301 A 1 HETATM 31 C C5X FAD . . . E 2 19.362 -37.719 -36.047 1 47.38 ? C5X FAD 301 A 1 HETATM 32 C C6 FAD . . . E 2 19.731 -36.968 -34.914 1 45.15 ? C6 FAD 301 A 1 HETATM 33 C C7 FAD . . . E 2 20.24 -35.691 -35.034 1 50.28 ? C7 FAD 301 A 1 HETATM 34 C C7M FAD . . . E 2 20.613 -34.909 -33.802 1 52.69 ? C7M FAD 301 A 1 HETATM 35 C C8 FAD . . . E 2 20.419 -35.122 -36.325 1 52.37 ? C8 FAD 301 A 1 HETATM 36 C C8M FAD . . . E 2 20.979 -33.735 -36.495 1 50.64 ? C8M FAD 301 A 1 HETATM 37 C C9 FAD . . . E 2 20.118 -35.873 -37.441 1 51.19 ? C9 FAD 301 A 1 HETATM 38 C C9A FAD . . . E 2 19.557 -37.161 -37.334 1 49.88 ? C9A FAD 301 A 1 HETATM 39 N N10 FAD . . . E 2 19.184 -37.921 -38.448 1 47.28 ? N10 FAD 301 A 1 HETATM 40 C C10 FAD . . . E 2 18.586 -39.146 -38.281 1 46.57 ? C10 FAD 301 A 1 HETATM 41 C C1' FAD . . . E 2 19.354 -37.433 -39.834 1 46.65 ? C1' FAD 301 A 1 HETATM 42 C C2' FAD . . . E 2 18.259 -36.559 -40.407 1 49.23 ? C2' FAD 301 A 1 HETATM 43 O O2' FAD . . . E 2 17.053 -37.291 -40.658 1 50.86 ? O2' FAD 301 A 1 HETATM 44 C C3' FAD . . . E 2 18.774 -35.919 -41.696 1 47.29 ? C3' FAD 301 A 1 HETATM 45 O O3' FAD . . . E 2 19.953 -35.155 -41.439 1 45.5 ? O3' FAD 301 A 1 HETATM 46 C C4' FAD . . . E 2 17.711 -35.035 -42.343 1 47.63 ? C4' FAD 301 A 1 HETATM 47 O O4' FAD . . . E 2 16.502 -35.753 -42.588 1 41.98 ? O4' FAD 301 A 1 HETATM 48 C C5' FAD . . . E 2 18.232 -34.498 -43.655 1 49.44 ? C5' FAD 301 A 1 HETATM 49 O O5' FAD . . . E 2 17.356 -33.464 -44.153 1 52.61 ? O5' FAD 301 A 1 HETATM 50 P P FAD . . . E 2 17.944 -31.993 -44.204 1 48.81 ? P FAD 301 A 1 HETATM 51 O O1P FAD . . . E 2 16.901 -31.06 -44.688 1 50.39 ? O1P FAD 301 A 1 HETATM 52 O O2P FAD . . . E 2 18.472 -31.787 -42.835 1 51.07 ? O2P FAD 301 A 1 HETATM 53 O O3P FAD . . . E 2 19.128 -32.207 -45.287 1 54.23 ? O3P FAD 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #