data_8RFM
#
_model_server_result.job_id            8mcq5rQan0BKABQvf8g2Aw 
_model_server_result.datetime_utc      '2024-11-29 17:06:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rfm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":301}' 
#
_entry.id    8RFM 
#
_exptl.entry_id    8RFM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RFM 
_cell.length_a            61.06 
_cell.length_b            106.79 
_cell.length_c            196.01 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RFM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 J N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     8RFM 
_atom_sites.fract_transf_matrix[1][1]    0.016377 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009364 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005102 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 301 1274 FAD FAD . 
F 3 NAD A 1 302 1275 NAD NAD . 
G 2 FAD B 1 301 1274 FAD FAD . 
H 2 FAD C 1 301 1274 FAD FAD . 
I 3 NAD C 1 302 1275 NAD NAD . 
J 2 FAD D 1 301 1274 FAD FAD . 
K 4 HOH A 1 401 4 HOH HOH . 
K 4 HOH A 2 402 17 HOH HOH . 
L 4 HOH B 1 401 3 HOH HOH . 
M 4 HOH C 1 401 9 HOH HOH . 
M 4 HOH C 2 402 6 HOH HOH . 
M 4 HOH C 3 403 13 HOH HOH . 
M 4 HOH C 4 404 7 HOH HOH . 
M 4 HOH C 5 405 8 HOH HOH . 
M 4 HOH C 6 406 10 HOH HOH . 
M 4 HOH C 7 407 5 HOH HOH . 
M 4 HOH C 8 408 14 HOH HOH . 
M 4 HOH C 9 409 2 HOH HOH . 
N 4 HOH D 1 401 11 HOH HOH . 
N 4 HOH D 2 402 1 HOH HOH . 
N 4 HOH D 3 403 15 HOH HOH . 
N 4 HOH D 4 404 16 HOH HOH . 
N 4 HOH D 5 405 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . J 2 21.299 2.035 -1.712 1 64.16 ? PA FAD 301 D 1 
HETATM 2 O O1A FAD . . . J 2 20.612 3.342 -1.877 1 62.7 ? O1A FAD 301 D 1 
HETATM 3 O O2A FAD . . . J 2 20.494 0.795 -1.77 1 64.47 ? O2A FAD 301 D 1 
HETATM 4 O O5B FAD . . . J 2 22.144 2.018 -0.35 1 75.3 ? O5B FAD 301 D 1 
HETATM 5 C C5B FAD . . . J 2 22.829 0.763 0.034 1 76.25 ? C5B FAD 301 D 1 
HETATM 6 C C4B FAD . . . J 2 22.571 0.409 1.484 1 70.17 ? C4B FAD 301 D 1 
HETATM 7 O O4B FAD . . . J 2 23.432 1.184 2.362 1 62.71 ? O4B FAD 301 D 1 
HETATM 8 C C3B FAD . . . J 2 21.138 0.666 1.958 1 64.26 ? C3B FAD 301 D 1 
HETATM 9 O O3B FAD . . . J 2 20.724 -0.338 2.873 1 61.13 ? O3B FAD 301 D 1 
HETATM 10 C C2B FAD . . . J 2 21.272 2.068 2.562 1 63.16 ? C2B FAD 301 D 1 
HETATM 11 O O2B FAD . . . J 2 20.167 2.415 3.372 1 54.8 ? O2B FAD 301 D 1 
HETATM 12 C C1B FAD . . . J 2 22.622 1.923 3.27 1 63.93 ? C1B FAD 301 D 1 
HETATM 13 N N9A FAD . . . J 2 23.264 3.2 3.608 1 67.54 ? N9A FAD 301 D 1 
HETATM 14 C C8A FAD . . . J 2 22.929 4.445 3.135 1 69.22 ? C8A FAD 301 D 1 
HETATM 15 N N7A FAD . . . J 2 23.635 5.423 3.649 1 68.31 ? N7A FAD 301 D 1 
HETATM 16 C C5A FAD . . . J 2 24.479 4.788 4.544 1 67.69 ? C5A FAD 301 D 1 
HETATM 17 C C6A FAD . . . J 2 25.471 5.282 5.41 1 66.87 ? C6A FAD 301 D 1 
HETATM 18 N N6A FAD . . . J 2 25.779 6.569 5.53 1 68.3 ? N6A FAD 301 D 1 
HETATM 19 N N1A FAD . . . J 2 26.131 4.385 6.177 1 70.79 ? N1A FAD 301 D 1 
HETATM 20 C C2A FAD . . . J 2 25.814 3.089 6.059 1 73.95 ? C2A FAD 301 D 1 
HETATM 21 N N3A FAD . . . J 2 24.902 2.513 5.281 1 76.01 ? N3A FAD 301 D 1 
HETATM 22 C C4A FAD . . . J 2 24.258 3.422 4.532 1 70.72 ? C4A FAD 301 D 1 
HETATM 23 N N1 FAD . . . J 2 23.932 -2.747 -11.217 1 55.7 ? N1 FAD 301 D 1 
HETATM 24 C C2 FAD . . . J 2 24.795 -3.565 -11.893 1 52.14 ? C2 FAD 301 D 1 
HETATM 25 O O2 FAD . . . J 2 25.589 -4.303 -11.307 1 51.91 ? O2 FAD 301 D 1 
HETATM 26 N N3 FAD . . . J 2 24.779 -3.572 -13.281 1 51.78 ? N3 FAD 301 D 1 
HETATM 27 C C4 FAD . . . J 2 23.956 -2.825 -14.088 1 50.55 ? C4 FAD 301 D 1 
HETATM 28 O O4 FAD . . . J 2 24.015 -2.921 -15.3 1 56.27 ? O4 FAD 301 D 1 
HETATM 29 C C4X FAD . . . J 2 23.048 -1.981 -13.366 1 50.09 ? C4X FAD 301 D 1 
HETATM 30 N N5 FAD . . . J 2 22.209 -1.242 -14.057 1 48.95 ? N5 FAD 301 D 1 
HETATM 31 C C5X FAD . . . J 2 21.343 -0.428 -13.37 1 49.99 ? C5X FAD 301 D 1 
HETATM 32 C C6 FAD . . . J 2 20.455 0.373 -14.118 1 50.68 ? C6 FAD 301 D 1 
HETATM 33 C C7 FAD . . . J 2 19.557 1.221 -13.505 1 56.95 ? C7 FAD 301 D 1 
HETATM 34 C C7M FAD . . . J 2 18.611 2.05 -14.34 1 58.13 ? C7M FAD 301 D 1 
HETATM 35 C C8 FAD . . . J 2 19.531 1.301 -12.078 1 54.24 ? C8 FAD 301 D 1 
HETATM 36 C C8M FAD . . . J 2 18.574 2.233 -11.381 1 48.72 ? C8M FAD 301 D 1 
HETATM 37 C C9 FAD . . . J 2 20.39 0.504 -11.337 1 50.25 ? C9 FAD 301 D 1 
HETATM 38 C C9A FAD . . . J 2 21.315 -0.36 -11.956 1 49.98 ? C9A FAD 301 D 1 
HETATM 39 N N10 FAD . . . J 2 22.215 -1.162 -11.247 1 52.04 ? N10 FAD 301 D 1 
HETATM 40 C C10 FAD . . . J 2 23.103 -1.999 -11.921 1 52.8 ? C10 FAD 301 D 1 
HETATM 41 C C1' FAD . . . J 2 22.218 -1.192 -9.771 1 53.29 ? C1' FAD 301 D 1 
HETATM 42 C C2' FAD . . . J 2 23.186 -0.243 -9.099 1 57.94 ? C2' FAD 301 D 1 
HETATM 43 O O2' FAD . . . J 2 24.543 -0.506 -9.469 1 58.58 ? O2' FAD 301 D 1 
HETATM 44 C C3' FAD . . . J 2 22.981 -0.354 -7.587 1 58.73 ? C3' FAD 301 D 1 
HETATM 45 O O3' FAD . . . J 2 21.597 -0.269 -7.251 1 50.38 ? O3' FAD 301 D 1 
HETATM 46 C C4' FAD . . . J 2 23.754 0.715 -6.824 1 61.65 ? C4' FAD 301 D 1 
HETATM 47 O O4' FAD . . . J 2 25.109 0.681 -7.268 1 56.04 ? O4' FAD 301 D 1 
HETATM 48 C C5' FAD . . . J 2 23.677 0.484 -5.324 1 66.97 ? C5' FAD 301 D 1 
HETATM 49 O O5' FAD . . . J 2 24.097 1.643 -4.561 1 68.12 ? O5' FAD 301 D 1 
HETATM 50 P P FAD . . . J 2 23.033 2.734 -4.094 1 60.82 ? P FAD 301 D 1 
HETATM 51 O O1P FAD . . . J 2 23.855 3.908 -3.714 1 53.73 ? O1P FAD 301 D 1 
HETATM 52 O O2P FAD . . . J 2 21.983 2.942 -5.121 1 54.25 ? O2P FAD 301 D 1 
HETATM 53 O O3P FAD . . . J 2 22.442 1.899 -2.84 1 68.56 ? O3P FAD 301 D 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           53 
#