data_8RFM # _model_server_result.job_id 9HmjImw7ttWte285oqxczA _model_server_result.datetime_utc '2024-11-05 16:29:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rfm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 8RFM # _exptl.entry_id 8RFM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RFM _cell.length_a 61.06 _cell.length_b 106.79 _cell.length_c 196.01 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RFM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 H N N ? 2 J N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 8RFM _atom_sites.fract_transf_matrix[1][1] 0.016377 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009364 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 301 1274 FAD FAD . F 3 NAD A 1 302 1275 NAD NAD . G 2 FAD B 1 301 1274 FAD FAD . H 2 FAD C 1 301 1274 FAD FAD . I 3 NAD C 1 302 1275 NAD NAD . J 2 FAD D 1 301 1274 FAD FAD . K 4 HOH A 1 401 4 HOH HOH . K 4 HOH A 2 402 17 HOH HOH . L 4 HOH B 1 401 3 HOH HOH . M 4 HOH C 1 401 9 HOH HOH . M 4 HOH C 2 402 6 HOH HOH . M 4 HOH C 3 403 13 HOH HOH . M 4 HOH C 4 404 7 HOH HOH . M 4 HOH C 5 405 8 HOH HOH . M 4 HOH C 6 406 10 HOH HOH . M 4 HOH C 7 407 5 HOH HOH . M 4 HOH C 8 408 14 HOH HOH . M 4 HOH C 9 409 2 HOH HOH . N 4 HOH D 1 401 11 HOH HOH . N 4 HOH D 2 402 1 HOH HOH . N 4 HOH D 3 403 15 HOH HOH . N 4 HOH D 4 404 16 HOH HOH . N 4 HOH D 5 405 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . J 2 21.299 2.035 -1.712 1 64.16 ? PA FAD 301 D 1 HETATM 2 O O1A FAD . . . J 2 20.612 3.342 -1.877 1 62.7 ? O1A FAD 301 D 1 HETATM 3 O O2A FAD . . . J 2 20.494 0.795 -1.77 1 64.47 ? O2A FAD 301 D 1 HETATM 4 O O5B FAD . . . J 2 22.144 2.018 -0.35 1 75.3 ? O5B FAD 301 D 1 HETATM 5 C C5B FAD . . . J 2 22.829 0.763 0.034 1 76.25 ? C5B FAD 301 D 1 HETATM 6 C C4B FAD . . . J 2 22.571 0.409 1.484 1 70.17 ? C4B FAD 301 D 1 HETATM 7 O O4B FAD . . . J 2 23.432 1.184 2.362 1 62.71 ? O4B FAD 301 D 1 HETATM 8 C C3B FAD . . . J 2 21.138 0.666 1.958 1 64.26 ? C3B FAD 301 D 1 HETATM 9 O O3B FAD . . . J 2 20.724 -0.338 2.873 1 61.13 ? O3B FAD 301 D 1 HETATM 10 C C2B FAD . . . J 2 21.272 2.068 2.562 1 63.16 ? C2B FAD 301 D 1 HETATM 11 O O2B FAD . . . J 2 20.167 2.415 3.372 1 54.8 ? O2B FAD 301 D 1 HETATM 12 C C1B FAD . . . J 2 22.622 1.923 3.27 1 63.93 ? C1B FAD 301 D 1 HETATM 13 N N9A FAD . . . J 2 23.264 3.2 3.608 1 67.54 ? N9A FAD 301 D 1 HETATM 14 C C8A FAD . . . J 2 22.929 4.445 3.135 1 69.22 ? C8A FAD 301 D 1 HETATM 15 N N7A FAD . . . J 2 23.635 5.423 3.649 1 68.31 ? N7A FAD 301 D 1 HETATM 16 C C5A FAD . . . J 2 24.479 4.788 4.544 1 67.69 ? C5A FAD 301 D 1 HETATM 17 C C6A FAD . . . J 2 25.471 5.282 5.41 1 66.87 ? C6A FAD 301 D 1 HETATM 18 N N6A FAD . . . J 2 25.779 6.569 5.53 1 68.3 ? N6A FAD 301 D 1 HETATM 19 N N1A FAD . . . J 2 26.131 4.385 6.177 1 70.79 ? N1A FAD 301 D 1 HETATM 20 C C2A FAD . . . J 2 25.814 3.089 6.059 1 73.95 ? C2A FAD 301 D 1 HETATM 21 N N3A FAD . . . J 2 24.902 2.513 5.281 1 76.01 ? N3A FAD 301 D 1 HETATM 22 C C4A FAD . . . J 2 24.258 3.422 4.532 1 70.72 ? C4A FAD 301 D 1 HETATM 23 N N1 FAD . . . J 2 23.932 -2.747 -11.217 1 55.7 ? N1 FAD 301 D 1 HETATM 24 C C2 FAD . . . J 2 24.795 -3.565 -11.893 1 52.14 ? C2 FAD 301 D 1 HETATM 25 O O2 FAD . . . J 2 25.589 -4.303 -11.307 1 51.91 ? O2 FAD 301 D 1 HETATM 26 N N3 FAD . . . J 2 24.779 -3.572 -13.281 1 51.78 ? N3 FAD 301 D 1 HETATM 27 C C4 FAD . . . J 2 23.956 -2.825 -14.088 1 50.55 ? C4 FAD 301 D 1 HETATM 28 O O4 FAD . . . J 2 24.015 -2.921 -15.3 1 56.27 ? O4 FAD 301 D 1 HETATM 29 C C4X FAD . . . J 2 23.048 -1.981 -13.366 1 50.09 ? C4X FAD 301 D 1 HETATM 30 N N5 FAD . . . J 2 22.209 -1.242 -14.057 1 48.95 ? N5 FAD 301 D 1 HETATM 31 C C5X FAD . . . J 2 21.343 -0.428 -13.37 1 49.99 ? C5X FAD 301 D 1 HETATM 32 C C6 FAD . . . J 2 20.455 0.373 -14.118 1 50.68 ? C6 FAD 301 D 1 HETATM 33 C C7 FAD . . . J 2 19.557 1.221 -13.505 1 56.95 ? C7 FAD 301 D 1 HETATM 34 C C7M FAD . . . J 2 18.611 2.05 -14.34 1 58.13 ? C7M FAD 301 D 1 HETATM 35 C C8 FAD . . . J 2 19.531 1.301 -12.078 1 54.24 ? C8 FAD 301 D 1 HETATM 36 C C8M FAD . . . J 2 18.574 2.233 -11.381 1 48.72 ? C8M FAD 301 D 1 HETATM 37 C C9 FAD . . . J 2 20.39 0.504 -11.337 1 50.25 ? C9 FAD 301 D 1 HETATM 38 C C9A FAD . . . J 2 21.315 -0.36 -11.956 1 49.98 ? C9A FAD 301 D 1 HETATM 39 N N10 FAD . . . J 2 22.215 -1.162 -11.247 1 52.04 ? N10 FAD 301 D 1 HETATM 40 C C10 FAD . . . J 2 23.103 -1.999 -11.921 1 52.8 ? C10 FAD 301 D 1 HETATM 41 C C1' FAD . . . J 2 22.218 -1.192 -9.771 1 53.29 ? C1' FAD 301 D 1 HETATM 42 C C2' FAD . . . J 2 23.186 -0.243 -9.099 1 57.94 ? C2' FAD 301 D 1 HETATM 43 O O2' FAD . . . J 2 24.543 -0.506 -9.469 1 58.58 ? O2' FAD 301 D 1 HETATM 44 C C3' FAD . . . J 2 22.981 -0.354 -7.587 1 58.73 ? C3' FAD 301 D 1 HETATM 45 O O3' FAD . . . J 2 21.597 -0.269 -7.251 1 50.38 ? O3' FAD 301 D 1 HETATM 46 C C4' FAD . . . J 2 23.754 0.715 -6.824 1 61.65 ? C4' FAD 301 D 1 HETATM 47 O O4' FAD . . . J 2 25.109 0.681 -7.268 1 56.04 ? O4' FAD 301 D 1 HETATM 48 C C5' FAD . . . J 2 23.677 0.484 -5.324 1 66.97 ? C5' FAD 301 D 1 HETATM 49 O O5' FAD . . . J 2 24.097 1.643 -4.561 1 68.12 ? O5' FAD 301 D 1 HETATM 50 P P FAD . . . J 2 23.033 2.734 -4.094 1 60.82 ? P FAD 301 D 1 HETATM 51 O O1P FAD . . . J 2 23.855 3.908 -3.714 1 53.73 ? O1P FAD 301 D 1 HETATM 52 O O2P FAD . . . J 2 21.983 2.942 -5.121 1 54.25 ? O2P FAD 301 D 1 HETATM 53 O O3P FAD . . . J 2 22.442 1.899 -2.84 1 68.56 ? O3P FAD 301 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #