data_8RFM
#
_model_server_result.job_id            4bI3Y4W-BEWYjvDL2MhCUA 
_model_server_result.datetime_utc      '2024-11-26 05:31:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rfm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":302}' 
#
_entry.id    8RFM 
#
_exptl.entry_id    8RFM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RFM 
_cell.length_a            61.06 
_cell.length_b            106.79 
_cell.length_c            196.01 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RFM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 328 n n 
PA O2A NAD sing 329 n n 
PA O5B NAD sing 330 n n 
PA O3 NAD sing 331 n n 
O2A HOA2 NAD sing 332 n n 
O5B C5B NAD sing 333 n n 
C5B C4B NAD sing 334 n n 
C5B H51A NAD sing 335 n n 
C5B H52A NAD sing 336 n n 
C4B O4B NAD sing 337 n n 
C4B C3B NAD sing 338 n n 
C4B H4B NAD sing 339 n n 
O4B C1B NAD sing 340 n n 
C3B O3B NAD sing 341 n n 
C3B C2B NAD sing 342 n n 
C3B H3B NAD sing 343 n n 
O3B HO3A NAD sing 344 n n 
C2B O2B NAD sing 345 n n 
C2B C1B NAD sing 346 n n 
C2B H2B NAD sing 347 n n 
O2B HO2A NAD sing 348 n n 
C1B N9A NAD sing 349 n n 
C1B H1B NAD sing 350 n n 
N9A C8A NAD sing 351 n y 
N9A C4A NAD sing 352 n y 
C8A N7A NAD doub 353 n y 
C8A H8A NAD sing 354 n n 
N7A C5A NAD sing 355 n y 
C5A C6A NAD sing 356 n y 
C5A C4A NAD doub 357 n y 
C6A N6A NAD sing 358 n n 
C6A N1A NAD doub 359 n y 
N6A H61A NAD sing 360 n n 
N6A H62A NAD sing 361 n n 
N1A C2A NAD sing 362 n y 
C2A N3A NAD doub 363 n y 
C2A H2A NAD sing 364 n n 
N3A C4A NAD sing 365 n y 
O3 PN NAD sing 366 n n 
PN O1N NAD doub 367 n n 
PN O2N NAD sing 368 n n 
PN O5D NAD sing 369 n n 
O5D C5D NAD sing 370 n n 
C5D C4D NAD sing 371 n n 
C5D H51N NAD sing 372 n n 
C5D H52N NAD sing 373 n n 
C4D O4D NAD sing 374 n n 
C4D C3D NAD sing 375 n n 
C4D H4D NAD sing 376 n n 
O4D C1D NAD sing 377 n n 
C3D O3D NAD sing 378 n n 
C3D C2D NAD sing 379 n n 
C3D H3D NAD sing 380 n n 
O3D HO3N NAD sing 381 n n 
C2D O2D NAD sing 382 n n 
C2D C1D NAD sing 383 n n 
C2D H2D NAD sing 384 n n 
O2D HO2N NAD sing 385 n n 
C1D N1N NAD sing 386 n n 
C1D H1D NAD sing 387 n n 
N1N C2N NAD sing 388 n y 
N1N C6N NAD doub 389 n y 
C2N C3N NAD doub 390 n y 
C2N H2N NAD sing 391 n n 
C3N C7N NAD sing 392 n n 
C3N C4N NAD sing 393 n y 
C7N O7N NAD doub 394 n n 
C7N N7N NAD sing 395 n n 
N7N H71N NAD sing 396 n n 
N7N H72N NAD sing 397 n n 
C4N C5N NAD doub 398 n y 
C4N H4N NAD sing 399 n n 
C5N C6N NAD sing 400 n y 
C5N H5N NAD sing 401 n n 
C6N H6N NAD sing 402 n n 
#
_atom_sites.entry_id                     8RFM 
_atom_sites.fract_transf_matrix[1][1]    0.016377 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009364 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005102 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 301 1274 FAD FAD . 
F 3 NAD A 1 302 1275 NAD NAD . 
G 2 FAD B 1 301 1274 FAD FAD . 
H 2 FAD C 1 301 1274 FAD FAD . 
I 3 NAD C 1 302 1275 NAD NAD . 
J 2 FAD D 1 301 1274 FAD FAD . 
K 4 HOH A 1 401 4 HOH HOH . 
K 4 HOH A 2 402 17 HOH HOH . 
L 4 HOH B 1 401 3 HOH HOH . 
M 4 HOH C 1 401 9 HOH HOH . 
M 4 HOH C 2 402 6 HOH HOH . 
M 4 HOH C 3 403 13 HOH HOH . 
M 4 HOH C 4 404 7 HOH HOH . 
M 4 HOH C 5 405 8 HOH HOH . 
M 4 HOH C 6 406 10 HOH HOH . 
M 4 HOH C 7 407 5 HOH HOH . 
M 4 HOH C 8 408 14 HOH HOH . 
M 4 HOH C 9 409 2 HOH HOH . 
N 4 HOH D 1 401 11 HOH HOH . 
N 4 HOH D 2 402 1 HOH HOH . 
N 4 HOH D 3 403 15 HOH HOH . 
N 4 HOH D 4 404 16 HOH HOH . 
N 4 HOH D 5 405 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . F 3 -10.144 -40.382 -10.743 1 218.93 ? PA NAD 302 A 1 
HETATM 2 O O1A NAD . . . F 3 -9.949 -41.399 -11.817 1 240.34 ? O1A NAD 302 A 1 
HETATM 3 O O2A NAD . . . F 3 -8.925 -39.766 -10.138 1 231.36 ? O2A NAD 302 A 1 
HETATM 4 O O5B NAD . . . F 3 -11.067 -41.002 -9.58 1 182.63 ? O5B NAD 302 A 1 
HETATM 5 C C5B NAD . . . F 3 -12.279 -41.743 -9.887 1 156.62 ? C5B NAD 302 A 1 
HETATM 6 C C4B NAD . . . F 3 -11.958 -43.173 -10.261 1 167.49 ? C4B NAD 302 A 1 
HETATM 7 O O4B NAD . . . F 3 -10.736 -43.615 -9.625 1 185.65 ? O4B NAD 302 A 1 
HETATM 8 C C3B NAD . . . F 3 -12.976 -44.226 -9.817 1 163.24 ? C3B NAD 302 A 1 
HETATM 9 O O3B NAD . . . F 3 -14.039 -44.305 -10.758 1 159.44 ? O3B NAD 302 A 1 
HETATM 10 C C2B NAD . . . F 3 -12.148 -45.518 -9.753 1 167.2 ? C2B NAD 302 A 1 
HETATM 11 O O2B NAD . . . F 3 -12.306 -46.302 -10.916 1 181.55 ? O2B NAD 302 A 1 
HETATM 12 C C1B NAD . . . F 3 -10.706 -45.027 -9.601 1 171.37 ? C1B NAD 302 A 1 
HETATM 13 N N9A NAD . . . F 3 -10.067 -45.445 -8.357 1 170.48 ? N9A NAD 302 A 1 
HETATM 14 C C8A NAD . . . F 3 -9.272 -46.547 -8.155 1 146.81 ? C8A NAD 302 A 1 
HETATM 15 N N7A NAD . . . F 3 -8.83 -46.647 -6.927 1 148.29 ? N7A NAD 302 A 1 
HETATM 16 C C5A NAD . . . F 3 -9.365 -45.543 -6.275 1 172.19 ? C5A NAD 302 A 1 
HETATM 17 C C6A NAD . . . F 3 -9.271 -45.08 -4.945 1 158.52 ? C6A NAD 302 A 1 
HETATM 18 N N6A NAD . . . F 3 -8.579 -45.701 -3.994 1 146.76 ? N6A NAD 302 A 1 
HETATM 19 N N1A NAD . . . F 3 -9.93 -43.938 -4.628 1 140.23 ? N1A NAD 302 A 1 
HETATM 20 C C2A NAD . . . F 3 -10.628 -43.313 -5.585 1 131.69 ? C2A NAD 302 A 1 
HETATM 21 N N3A NAD . . . F 3 -10.79 -43.656 -6.859 1 155.76 ? N3A NAD 302 A 1 
HETATM 22 C C4A NAD . . . F 3 -10.127 -44.791 -7.148 1 176.36 ? C4A NAD 302 A 1 
HETATM 23 O O3 NAD . . . F 3 -11.061 -39.202 -11.326 1 215.21 ? O3 NAD 302 A 1 
HETATM 24 P PN NAD . . . F 3 -11.033 -38.372 -12.704 1 197.74 ? PN NAD 302 A 1 
HETATM 25 O O1N NAD . . . F 3 -11.95 -37.201 -12.578 1 168.26 ? O1N NAD 302 A 1 
HETATM 26 O O2N NAD . . . F 3 -11.281 -39.317 -13.834 1 206.25 ? O2N NAD 302 A 1 
HETATM 27 O O5D NAD . . . F 3 -9.509 -37.853 -12.762 1 215.33 ? O5D NAD 302 A 1 
HETATM 28 C C5D NAD . . . F 3 -8.648 -38.36 -13.822 1 213.06 ? C5D NAD 302 A 1 
HETATM 29 C C4D NAD . . . F 3 -7.297 -37.679 -13.789 1 192.85 ? C4D NAD 302 A 1 
HETATM 30 O O4D NAD . . . F 3 -6.289 -38.596 -14.279 1 199.67 ? O4D NAD 302 A 1 
HETATM 31 C C3D NAD . . . F 3 -7.148 -36.423 -14.661 1 171.55 ? C3D NAD 302 A 1 
HETATM 32 O O3D NAD . . . F 3 -7.527 -35.244 -13.957 1 111.59 ? O3D NAD 302 A 1 
HETATM 33 C C2D NAD . . . F 3 -5.654 -36.429 -15.01 1 180.22 ? C2D NAD 302 A 1 
HETATM 34 O O2D NAD . . . F 3 -4.839 -35.894 -13.98 1 165.55 ? O2D NAD 302 A 1 
HETATM 35 C C1D NAD . . . F 3 -5.37 -37.929 -15.149 1 183.32 ? C1D NAD 302 A 1 
HETATM 36 N N1N NAD . . . F 3 -5.523 -38.461 -16.533 1 175.39 ? N1N NAD 302 A 1 
HETATM 37 C C2N NAD . . . F 3 -4.428 -38.538 -17.369 1 148.32 ? C2N NAD 302 A 1 
HETATM 38 C C3N NAD . . . F 3 -4.571 -39.081 -18.646 1 144.28 ? C3N NAD 302 A 1 
HETATM 39 C C7N NAD . . . F 3 -3.409 -39.169 -19.583 1 128.53 ? C7N NAD 302 A 1 
HETATM 40 O O7N NAD . . . F 3 -2.464 -38.371 -19.47 1 125.53 ? O7N NAD 302 A 1 
HETATM 41 N N7N NAD . . . F 3 -3.387 -40.192 -20.431 1 100.98 ? N7N NAD 302 A 1 
HETATM 42 C C4N NAD . . . F 3 -5.821 -39.456 -19.114 1 150.75 ? C4N NAD 302 A 1 
HETATM 43 C C5N NAD . . . F 3 -6.914 -39.358 -18.278 1 164.1 ? C5N NAD 302 A 1 
HETATM 44 C C6N NAD . . . F 3 -6.757 -38.863 -16.996 1 178.65 ? C6N NAD 302 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           44 
#