data_8RFM # _model_server_result.job_id lJbjsnMi81Jo5GNHxJzvCA _model_server_result.datetime_utc '2024-11-05 16:42:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rfm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 8RFM # _exptl.entry_id 8RFM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RFM _cell.length_a 61.06 _cell.length_b 106.79 _cell.length_c 196.01 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RFM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 328 n n PA O2A NAD sing 329 n n PA O5B NAD sing 330 n n PA O3 NAD sing 331 n n O2A HOA2 NAD sing 332 n n O5B C5B NAD sing 333 n n C5B C4B NAD sing 334 n n C5B H51A NAD sing 335 n n C5B H52A NAD sing 336 n n C4B O4B NAD sing 337 n n C4B C3B NAD sing 338 n n C4B H4B NAD sing 339 n n O4B C1B NAD sing 340 n n C3B O3B NAD sing 341 n n C3B C2B NAD sing 342 n n C3B H3B NAD sing 343 n n O3B HO3A NAD sing 344 n n C2B O2B NAD sing 345 n n C2B C1B NAD sing 346 n n C2B H2B NAD sing 347 n n O2B HO2A NAD sing 348 n n C1B N9A NAD sing 349 n n C1B H1B NAD sing 350 n n N9A C8A NAD sing 351 n y N9A C4A NAD sing 352 n y C8A N7A NAD doub 353 n y C8A H8A NAD sing 354 n n N7A C5A NAD sing 355 n y C5A C6A NAD sing 356 n y C5A C4A NAD doub 357 n y C6A N6A NAD sing 358 n n C6A N1A NAD doub 359 n y N6A H61A NAD sing 360 n n N6A H62A NAD sing 361 n n N1A C2A NAD sing 362 n y C2A N3A NAD doub 363 n y C2A H2A NAD sing 364 n n N3A C4A NAD sing 365 n y O3 PN NAD sing 366 n n PN O1N NAD doub 367 n n PN O2N NAD sing 368 n n PN O5D NAD sing 369 n n O5D C5D NAD sing 370 n n C5D C4D NAD sing 371 n n C5D H51N NAD sing 372 n n C5D H52N NAD sing 373 n n C4D O4D NAD sing 374 n n C4D C3D NAD sing 375 n n C4D H4D NAD sing 376 n n O4D C1D NAD sing 377 n n C3D O3D NAD sing 378 n n C3D C2D NAD sing 379 n n C3D H3D NAD sing 380 n n O3D HO3N NAD sing 381 n n C2D O2D NAD sing 382 n n C2D C1D NAD sing 383 n n C2D H2D NAD sing 384 n n O2D HO2N NAD sing 385 n n C1D N1N NAD sing 386 n n C1D H1D NAD sing 387 n n N1N C2N NAD sing 388 n y N1N C6N NAD doub 389 n y C2N C3N NAD doub 390 n y C2N H2N NAD sing 391 n n C3N C7N NAD sing 392 n n C3N C4N NAD sing 393 n y C7N O7N NAD doub 394 n n C7N N7N NAD sing 395 n n N7N H71N NAD sing 396 n n N7N H72N NAD sing 397 n n C4N C5N NAD doub 398 n y C4N H4N NAD sing 399 n n C5N C6N NAD sing 400 n y C5N H5N NAD sing 401 n n C6N H6N NAD sing 402 n n # _atom_sites.entry_id 8RFM _atom_sites.fract_transf_matrix[1][1] 0.016377 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009364 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 301 1274 FAD FAD . F 3 NAD A 1 302 1275 NAD NAD . G 2 FAD B 1 301 1274 FAD FAD . H 2 FAD C 1 301 1274 FAD FAD . I 3 NAD C 1 302 1275 NAD NAD . J 2 FAD D 1 301 1274 FAD FAD . K 4 HOH A 1 401 4 HOH HOH . K 4 HOH A 2 402 17 HOH HOH . L 4 HOH B 1 401 3 HOH HOH . M 4 HOH C 1 401 9 HOH HOH . M 4 HOH C 2 402 6 HOH HOH . M 4 HOH C 3 403 13 HOH HOH . M 4 HOH C 4 404 7 HOH HOH . M 4 HOH C 5 405 8 HOH HOH . M 4 HOH C 6 406 10 HOH HOH . M 4 HOH C 7 407 5 HOH HOH . M 4 HOH C 8 408 14 HOH HOH . M 4 HOH C 9 409 2 HOH HOH . N 4 HOH D 1 401 11 HOH HOH . N 4 HOH D 2 402 1 HOH HOH . N 4 HOH D 3 403 15 HOH HOH . N 4 HOH D 4 404 16 HOH HOH . N 4 HOH D 5 405 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . F 3 -10.144 -40.382 -10.743 1 218.93 ? PA NAD 302 A 1 HETATM 2 O O1A NAD . . . F 3 -9.949 -41.399 -11.817 1 240.34 ? O1A NAD 302 A 1 HETATM 3 O O2A NAD . . . F 3 -8.925 -39.766 -10.138 1 231.36 ? O2A NAD 302 A 1 HETATM 4 O O5B NAD . . . F 3 -11.067 -41.002 -9.58 1 182.63 ? O5B NAD 302 A 1 HETATM 5 C C5B NAD . . . F 3 -12.279 -41.743 -9.887 1 156.62 ? C5B NAD 302 A 1 HETATM 6 C C4B NAD . . . F 3 -11.958 -43.173 -10.261 1 167.49 ? C4B NAD 302 A 1 HETATM 7 O O4B NAD . . . F 3 -10.736 -43.615 -9.625 1 185.65 ? O4B NAD 302 A 1 HETATM 8 C C3B NAD . . . F 3 -12.976 -44.226 -9.817 1 163.24 ? C3B NAD 302 A 1 HETATM 9 O O3B NAD . . . F 3 -14.039 -44.305 -10.758 1 159.44 ? O3B NAD 302 A 1 HETATM 10 C C2B NAD . . . F 3 -12.148 -45.518 -9.753 1 167.2 ? C2B NAD 302 A 1 HETATM 11 O O2B NAD . . . F 3 -12.306 -46.302 -10.916 1 181.55 ? O2B NAD 302 A 1 HETATM 12 C C1B NAD . . . F 3 -10.706 -45.027 -9.601 1 171.37 ? C1B NAD 302 A 1 HETATM 13 N N9A NAD . . . F 3 -10.067 -45.445 -8.357 1 170.48 ? N9A NAD 302 A 1 HETATM 14 C C8A NAD . . . F 3 -9.272 -46.547 -8.155 1 146.81 ? C8A NAD 302 A 1 HETATM 15 N N7A NAD . . . F 3 -8.83 -46.647 -6.927 1 148.29 ? N7A NAD 302 A 1 HETATM 16 C C5A NAD . . . F 3 -9.365 -45.543 -6.275 1 172.19 ? C5A NAD 302 A 1 HETATM 17 C C6A NAD . . . F 3 -9.271 -45.08 -4.945 1 158.52 ? C6A NAD 302 A 1 HETATM 18 N N6A NAD . . . F 3 -8.579 -45.701 -3.994 1 146.76 ? N6A NAD 302 A 1 HETATM 19 N N1A NAD . . . F 3 -9.93 -43.938 -4.628 1 140.23 ? N1A NAD 302 A 1 HETATM 20 C C2A NAD . . . F 3 -10.628 -43.313 -5.585 1 131.69 ? C2A NAD 302 A 1 HETATM 21 N N3A NAD . . . F 3 -10.79 -43.656 -6.859 1 155.76 ? N3A NAD 302 A 1 HETATM 22 C C4A NAD . . . F 3 -10.127 -44.791 -7.148 1 176.36 ? C4A NAD 302 A 1 HETATM 23 O O3 NAD . . . F 3 -11.061 -39.202 -11.326 1 215.21 ? O3 NAD 302 A 1 HETATM 24 P PN NAD . . . F 3 -11.033 -38.372 -12.704 1 197.74 ? PN NAD 302 A 1 HETATM 25 O O1N NAD . . . F 3 -11.95 -37.201 -12.578 1 168.26 ? O1N NAD 302 A 1 HETATM 26 O O2N NAD . . . F 3 -11.281 -39.317 -13.834 1 206.25 ? O2N NAD 302 A 1 HETATM 27 O O5D NAD . . . F 3 -9.509 -37.853 -12.762 1 215.33 ? O5D NAD 302 A 1 HETATM 28 C C5D NAD . . . F 3 -8.648 -38.36 -13.822 1 213.06 ? C5D NAD 302 A 1 HETATM 29 C C4D NAD . . . F 3 -7.297 -37.679 -13.789 1 192.85 ? C4D NAD 302 A 1 HETATM 30 O O4D NAD . . . F 3 -6.289 -38.596 -14.279 1 199.67 ? O4D NAD 302 A 1 HETATM 31 C C3D NAD . . . F 3 -7.148 -36.423 -14.661 1 171.55 ? C3D NAD 302 A 1 HETATM 32 O O3D NAD . . . F 3 -7.527 -35.244 -13.957 1 111.59 ? O3D NAD 302 A 1 HETATM 33 C C2D NAD . . . F 3 -5.654 -36.429 -15.01 1 180.22 ? C2D NAD 302 A 1 HETATM 34 O O2D NAD . . . F 3 -4.839 -35.894 -13.98 1 165.55 ? O2D NAD 302 A 1 HETATM 35 C C1D NAD . . . F 3 -5.37 -37.929 -15.149 1 183.32 ? C1D NAD 302 A 1 HETATM 36 N N1N NAD . . . F 3 -5.523 -38.461 -16.533 1 175.39 ? N1N NAD 302 A 1 HETATM 37 C C2N NAD . . . F 3 -4.428 -38.538 -17.369 1 148.32 ? C2N NAD 302 A 1 HETATM 38 C C3N NAD . . . F 3 -4.571 -39.081 -18.646 1 144.28 ? C3N NAD 302 A 1 HETATM 39 C C7N NAD . . . F 3 -3.409 -39.169 -19.583 1 128.53 ? C7N NAD 302 A 1 HETATM 40 O O7N NAD . . . F 3 -2.464 -38.371 -19.47 1 125.53 ? O7N NAD 302 A 1 HETATM 41 N N7N NAD . . . F 3 -3.387 -40.192 -20.431 1 100.98 ? N7N NAD 302 A 1 HETATM 42 C C4N NAD . . . F 3 -5.821 -39.456 -19.114 1 150.75 ? C4N NAD 302 A 1 HETATM 43 C C5N NAD . . . F 3 -6.914 -39.358 -18.278 1 164.1 ? C5N NAD 302 A 1 HETATM 44 C C6N NAD . . . F 3 -6.757 -38.863 -16.996 1 178.65 ? C6N NAD 302 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 44 #