data_8RFM
#
_model_server_result.job_id            beCE2KkplDLgOKc9n9vpag 
_model_server_result.datetime_utc      '2024-11-05 16:24:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rfm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":302}' 
#
_entry.id    8RFM 
#
_exptl.entry_id    8RFM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RFM 
_cell.length_a            61.06 
_cell.length_b            106.79 
_cell.length_c            196.01 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RFM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 328 n n 
PA O2A NAD sing 329 n n 
PA O5B NAD sing 330 n n 
PA O3 NAD sing 331 n n 
O2A HOA2 NAD sing 332 n n 
O5B C5B NAD sing 333 n n 
C5B C4B NAD sing 334 n n 
C5B H51A NAD sing 335 n n 
C5B H52A NAD sing 336 n n 
C4B O4B NAD sing 337 n n 
C4B C3B NAD sing 338 n n 
C4B H4B NAD sing 339 n n 
O4B C1B NAD sing 340 n n 
C3B O3B NAD sing 341 n n 
C3B C2B NAD sing 342 n n 
C3B H3B NAD sing 343 n n 
O3B HO3A NAD sing 344 n n 
C2B O2B NAD sing 345 n n 
C2B C1B NAD sing 346 n n 
C2B H2B NAD sing 347 n n 
O2B HO2A NAD sing 348 n n 
C1B N9A NAD sing 349 n n 
C1B H1B NAD sing 350 n n 
N9A C8A NAD sing 351 n y 
N9A C4A NAD sing 352 n y 
C8A N7A NAD doub 353 n y 
C8A H8A NAD sing 354 n n 
N7A C5A NAD sing 355 n y 
C5A C6A NAD sing 356 n y 
C5A C4A NAD doub 357 n y 
C6A N6A NAD sing 358 n n 
C6A N1A NAD doub 359 n y 
N6A H61A NAD sing 360 n n 
N6A H62A NAD sing 361 n n 
N1A C2A NAD sing 362 n y 
C2A N3A NAD doub 363 n y 
C2A H2A NAD sing 364 n n 
N3A C4A NAD sing 365 n y 
O3 PN NAD sing 366 n n 
PN O1N NAD doub 367 n n 
PN O2N NAD sing 368 n n 
PN O5D NAD sing 369 n n 
O5D C5D NAD sing 370 n n 
C5D C4D NAD sing 371 n n 
C5D H51N NAD sing 372 n n 
C5D H52N NAD sing 373 n n 
C4D O4D NAD sing 374 n n 
C4D C3D NAD sing 375 n n 
C4D H4D NAD sing 376 n n 
O4D C1D NAD sing 377 n n 
C3D O3D NAD sing 378 n n 
C3D C2D NAD sing 379 n n 
C3D H3D NAD sing 380 n n 
O3D HO3N NAD sing 381 n n 
C2D O2D NAD sing 382 n n 
C2D C1D NAD sing 383 n n 
C2D H2D NAD sing 384 n n 
O2D HO2N NAD sing 385 n n 
C1D N1N NAD sing 386 n n 
C1D H1D NAD sing 387 n n 
N1N C2N NAD sing 388 n y 
N1N C6N NAD doub 389 n y 
C2N C3N NAD doub 390 n y 
C2N H2N NAD sing 391 n n 
C3N C7N NAD sing 392 n n 
C3N C4N NAD sing 393 n y 
C7N O7N NAD doub 394 n n 
C7N N7N NAD sing 395 n n 
N7N H71N NAD sing 396 n n 
N7N H72N NAD sing 397 n n 
C4N C5N NAD doub 398 n y 
C4N H4N NAD sing 399 n n 
C5N C6N NAD sing 400 n y 
C5N H5N NAD sing 401 n n 
C6N H6N NAD sing 402 n n 
#
_atom_sites.entry_id                     8RFM 
_atom_sites.fract_transf_matrix[1][1]    0.016377 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009364 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005102 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 301 1274 FAD FAD . 
F 3 NAD A 1 302 1275 NAD NAD . 
G 2 FAD B 1 301 1274 FAD FAD . 
H 2 FAD C 1 301 1274 FAD FAD . 
I 3 NAD C 1 302 1275 NAD NAD . 
J 2 FAD D 1 301 1274 FAD FAD . 
K 4 HOH A 1 401 4 HOH HOH . 
K 4 HOH A 2 402 17 HOH HOH . 
L 4 HOH B 1 401 3 HOH HOH . 
M 4 HOH C 1 401 9 HOH HOH . 
M 4 HOH C 2 402 6 HOH HOH . 
M 4 HOH C 3 403 13 HOH HOH . 
M 4 HOH C 4 404 7 HOH HOH . 
M 4 HOH C 5 405 8 HOH HOH . 
M 4 HOH C 6 406 10 HOH HOH . 
M 4 HOH C 7 407 5 HOH HOH . 
M 4 HOH C 8 408 14 HOH HOH . 
M 4 HOH C 9 409 2 HOH HOH . 
N 4 HOH D 1 401 11 HOH HOH . 
N 4 HOH D 2 402 1 HOH HOH . 
N 4 HOH D 3 403 15 HOH HOH . 
N 4 HOH D 4 404 16 HOH HOH . 
N 4 HOH D 5 405 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . I 3 18.698 -11.268 -4.506 1 211.27 ? PA NAD 302 C 1 
HETATM 2 O O1A NAD . . . I 3 18.093 -12.499 -5.092 1 196.35 ? O1A NAD 302 C 1 
HETATM 3 O O2A NAD . . . I 3 20.177 -11.221 -4.312 1 211.23 ? O2A NAD 302 C 1 
HETATM 4 O O5B NAD . . . I 3 17.98 -10.966 -3.105 1 202.51 ? O5B NAD 302 C 1 
HETATM 5 C C5B NAD . . . I 3 17.661 -12.102 -2.253 1 197.33 ? C5B NAD 302 C 1 
HETATM 6 C C4B NAD . . . I 3 18.924 -12.645 -1.627 1 206.92 ? C4B NAD 302 C 1 
HETATM 7 O O4B NAD . . . I 3 18.623 -13.159 -0.303 1 195.69 ? O4B NAD 302 C 1 
HETATM 8 C C3B NAD . . . I 3 19.608 -13.803 -2.373 1 216.21 ? C3B NAD 302 C 1 
HETATM 9 O O3B NAD . . . I 3 21.021 -13.647 -2.351 1 225.05 ? O3B NAD 302 C 1 
HETATM 10 C C2B NAD . . . I 3 19.151 -15.032 -1.584 1 212.62 ? C2B NAD 302 C 1 
HETATM 11 O O2B NAD . . . I 3 20.03 -16.128 -1.704 1 212.56 ? O2B NAD 302 C 1 
HETATM 12 C C1B NAD . . . I 3 19.144 -14.461 -0.173 1 197.48 ? C1B NAD 302 C 1 
HETATM 13 N N9A NAD . . . I 3 18.312 -15.209 0.76 1 167.29 ? N9A NAD 302 C 1 
HETATM 14 C C8A NAD . . . I 3 17.166 -14.77 1.371 1 130.52 ? C8A NAD 302 C 1 
HETATM 15 N N7A NAD . . . I 3 16.625 -15.661 2.163 1 125.36 ? N7A NAD 302 C 1 
HETATM 16 C C5A NAD . . . I 3 17.467 -16.759 2.07 1 133.83 ? C5A NAD 302 C 1 
HETATM 17 C C6A NAD . . . I 3 17.436 -18.029 2.676 1 117.88 ? C6A NAD 302 C 1 
HETATM 18 N N6A NAD . . . I 3 16.49 -18.419 3.525 1 104.61 ? N6A NAD 302 C 1 
HETATM 19 N N1A NAD . . . I 3 18.43 -18.893 2.367 1 118.26 ? N1A NAD 302 C 1 
HETATM 20 C C2A NAD . . . I 3 19.379 -18.494 1.511 1 121.05 ? C2A NAD 302 C 1 
HETATM 21 N N3A NAD . . . I 3 19.512 -17.33 0.884 1 146.81 ? N3A NAD 302 C 1 
HETATM 22 C C4A NAD . . . I 3 18.512 -16.493 1.207 1 157.37 ? C4A NAD 302 C 1 
HETATM 23 O O3 NAD . . . I 3 18.287 -10.02 -5.427 1 236.69 ? O3 NAD 302 C 1 
HETATM 24 P PN NAD . . . I 3 18.787 -9.689 -6.918 1 246.99 ? PN NAD 302 C 1 
HETATM 25 O O1N NAD . . . I 3 18.117 -10.63 -7.862 1 263.97 ? O1N NAD 302 C 1 
HETATM 26 O O2N NAD . . . I 3 20.279 -9.638 -6.921 1 224.75 ? O2N NAD 302 C 1 
HETATM 27 O O5D NAD . . . I 3 18.22 -8.21 -7.165 1 226.66 ? O5D NAD 302 C 1 
HETATM 28 C C5D NAD . . . I 3 18.437 -7.64 -8.483 1 203.08 ? C5D NAD 302 C 1 
HETATM 29 C C4D NAD . . . I 3 19.241 -6.37 -8.355 1 195.02 ? C4D NAD 302 C 1 
HETATM 30 O O4D NAD . . . I 3 20.199 -6.272 -9.427 1 186.32 ? O4D NAD 302 C 1 
HETATM 31 C C3D NAD . . . I 3 18.449 -5.065 -8.479 1 185.89 ? C3D NAD 302 C 1 
HETATM 32 O O3D NAD . . . I 3 17.752 -4.772 -7.275 1 195.55 ? O3D NAD 302 C 1 
HETATM 33 C C2D NAD . . . I 3 19.57 -4.062 -8.774 1 172.92 ? C2D NAD 302 C 1 
HETATM 34 O O2D NAD . . . I 3 20.246 -3.643 -7.6 1 160.78 ? O2D NAD 302 C 1 
HETATM 35 C C1D NAD . . . I 3 20.527 -4.898 -9.634 1 157.65 ? C1D NAD 302 C 1 
HETATM 36 N N1N NAD . . . I 3 20.426 -4.601 -11.078 1 150.16 ? N1N NAD 302 C 1 
HETATM 37 C C2N NAD . . . I 3 21.224 -5.271 -11.974 1 153.47 ? C2N NAD 302 C 1 
HETATM 38 C C3N NAD . . . I 3 21.128 -4.988 -13.331 1 141.82 ? C3N NAD 302 C 1 
HETATM 39 C C7N NAD . . . I 3 22.002 -5.725 -14.296 1 118.85 ? C7N NAD 302 C 1 
HETATM 40 O O7N NAD . . . I 3 22.053 -5.36 -15.481 1 96.53 ? O7N NAD 302 C 1 
HETATM 41 N N7N NAD . . . I 3 22.71 -6.747 -13.836 1 110.05 ? N7N NAD 302 C 1 
HETATM 42 C C4N NAD . . . I 3 20.237 -4.026 -13.776 1 145.21 ? C4N NAD 302 C 1 
HETATM 43 C C5N NAD . . . I 3 19.451 -3.353 -12.864 1 138.51 ? C5N NAD 302 C 1 
HETATM 44 C C6N NAD . . . I 3 19.547 -3.645 -11.522 1 136.46 ? C6N NAD 302 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#