data_8RFN # _model_server_result.job_id zCYN364y7C9p6GkOunHy2g _model_server_result.datetime_utc '2024-10-19 14:36:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rfn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 8RFN # _exptl.entry_id 8RFN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RFN _cell.length_a 62 _cell.length_b 108 _cell.length_c 200 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RFN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 116 n n PA O2A FAD sing 117 n n PA O5B FAD sing 118 n n PA O3P FAD sing 119 n n O2A HOA2 FAD sing 120 n n O5B C5B FAD sing 121 n n C5B C4B FAD sing 122 n n C5B H51A FAD sing 123 n n C5B H52A FAD sing 124 n n C4B O4B FAD sing 125 n n C4B C3B FAD sing 126 n n C4B H4B FAD sing 127 n n O4B C1B FAD sing 128 n n C3B O3B FAD sing 129 n n C3B C2B FAD sing 130 n n C3B H3B FAD sing 131 n n O3B HO3A FAD sing 132 n n C2B O2B FAD sing 133 n n C2B C1B FAD sing 134 n n C2B H2B FAD sing 135 n n O2B HO2A FAD sing 136 n n C1B N9A FAD sing 137 n n C1B H1B FAD sing 138 n n N9A C8A FAD sing 139 n y N9A C4A FAD sing 140 n y C8A N7A FAD doub 141 n y C8A H8A FAD sing 142 n n N7A C5A FAD sing 143 n y C5A C6A FAD sing 144 n y C5A C4A FAD doub 145 n y C6A N6A FAD sing 146 n n C6A N1A FAD doub 147 n y N6A H61A FAD sing 148 n n N6A H62A FAD sing 149 n n N1A C2A FAD sing 150 n y C2A N3A FAD doub 151 n y C2A H2A FAD sing 152 n n N3A C4A FAD sing 153 n y N1 C2 FAD sing 154 n n N1 C10 FAD doub 155 n n C2 O2 FAD doub 156 n n C2 N3 FAD sing 157 n n N3 C4 FAD sing 158 n n N3 HN3 FAD sing 159 n n C4 O4 FAD doub 160 n n C4 C4X FAD sing 161 n n C4X N5 FAD doub 162 n n C4X C10 FAD sing 163 n n N5 C5X FAD sing 164 n n C5X C6 FAD doub 165 n y C5X C9A FAD sing 166 n y C6 C7 FAD sing 167 n y C6 H6 FAD sing 168 n n C7 C7M FAD sing 169 n n C7 C8 FAD doub 170 n y C7M HM71 FAD sing 171 n n C7M HM72 FAD sing 172 n n C7M HM73 FAD sing 173 n n C8 C8M FAD sing 174 n n C8 C9 FAD sing 175 n y C8M HM81 FAD sing 176 n n C8M HM82 FAD sing 177 n n C8M HM83 FAD sing 178 n n C9 C9A FAD doub 179 n y C9 H9 FAD sing 180 n n C9A N10 FAD sing 181 n n N10 C10 FAD sing 182 n n N10 C1' FAD sing 183 n n C1' C2' FAD sing 184 n n C1' "H1'1" FAD sing 185 n n C1' "H1'2" FAD sing 186 n n C2' O2' FAD sing 187 n n C2' C3' FAD sing 188 n n C2' H2' FAD sing 189 n n O2' HO2' FAD sing 190 n n C3' O3' FAD sing 191 n n C3' C4' FAD sing 192 n n C3' H3' FAD sing 193 n n O3' HO3' FAD sing 194 n n C4' O4' FAD sing 195 n n C4' C5' FAD sing 196 n n C4' H4' FAD sing 197 n n O4' HO4' FAD sing 198 n n C5' O5' FAD sing 199 n n C5' "H5'1" FAD sing 200 n n C5' "H5'2" FAD sing 201 n n O5' P FAD sing 202 n n P O1P FAD doub 203 n n P O2P FAD sing 204 n n P O3P FAD sing 205 n n O2P HOP2 FAD sing 206 n n # _atom_sites.entry_id 8RFN _atom_sites.fract_transf_matrix[1][1] 0.016129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 301 1274 FAD FAD . F 2 FAD B 1 301 1274 FAD FAD . G 3 EPE B 1 302 1 EPE EPE . H 2 FAD C 1 301 1274 FAD FAD . I 2 FAD D 1 301 1274 FAD FAD . J 4 HOH A 1 401 7 HOH HOH . J 4 HOH A 2 402 18 HOH HOH . J 4 HOH A 3 403 11 HOH HOH . J 4 HOH A 4 404 28 HOH HOH . J 4 HOH A 5 405 49 HOH HOH . J 4 HOH A 6 406 33 HOH HOH . J 4 HOH A 7 407 27 HOH HOH . J 4 HOH A 8 408 30 HOH HOH . J 4 HOH A 9 409 51 HOH HOH . J 4 HOH A 10 410 32 HOH HOH . J 4 HOH A 11 411 34 HOH HOH . J 4 HOH A 12 412 31 HOH HOH . J 4 HOH A 13 413 62 HOH HOH . J 4 HOH A 14 414 35 HOH HOH . K 4 HOH B 1 401 13 HOH HOH . K 4 HOH B 2 402 10 HOH HOH . K 4 HOH B 3 403 26 HOH HOH . K 4 HOH B 4 404 6 HOH HOH . K 4 HOH B 5 405 40 HOH HOH . K 4 HOH B 6 406 21 HOH HOH . K 4 HOH B 7 407 76 HOH HOH . K 4 HOH B 8 408 52 HOH HOH . K 4 HOH B 9 409 29 HOH HOH . K 4 HOH B 10 410 48 HOH HOH . K 4 HOH B 11 411 14 HOH HOH . K 4 HOH B 12 412 22 HOH HOH . K 4 HOH B 13 413 68 HOH HOH . K 4 HOH B 14 414 46 HOH HOH . K 4 HOH B 15 415 44 HOH HOH . K 4 HOH B 16 416 39 HOH HOH . K 4 HOH B 17 417 45 HOH HOH . K 4 HOH B 18 418 50 HOH HOH . K 4 HOH B 19 419 42 HOH HOH . K 4 HOH B 20 420 43 HOH HOH . K 4 HOH B 21 421 60 HOH HOH . K 4 HOH B 22 422 41 HOH HOH . K 4 HOH B 23 423 47 HOH HOH . K 4 HOH B 24 424 53 HOH HOH . K 4 HOH B 25 425 59 HOH HOH . K 4 HOH B 26 426 37 HOH HOH . K 4 HOH B 27 427 38 HOH HOH . K 4 HOH B 28 428 61 HOH HOH . K 4 HOH B 29 429 36 HOH HOH . K 4 HOH B 30 430 57 HOH HOH . L 4 HOH C 1 401 17 HOH HOH . L 4 HOH C 2 402 63 HOH HOH . L 4 HOH C 3 403 73 HOH HOH . L 4 HOH C 4 404 19 HOH HOH . L 4 HOH C 5 405 1 HOH HOH . L 4 HOH C 6 406 12 HOH HOH . L 4 HOH C 7 407 3 HOH HOH . L 4 HOH C 8 408 2 HOH HOH . L 4 HOH C 9 409 20 HOH HOH . L 4 HOH C 10 410 5 HOH HOH . L 4 HOH C 11 411 24 HOH HOH . L 4 HOH C 12 412 54 HOH HOH . L 4 HOH C 13 413 8 HOH HOH . L 4 HOH C 14 414 67 HOH HOH . L 4 HOH C 15 415 55 HOH HOH . L 4 HOH C 16 416 65 HOH HOH . L 4 HOH C 17 417 66 HOH HOH . L 4 HOH C 18 418 56 HOH HOH . L 4 HOH C 19 419 64 HOH HOH . M 4 HOH D 1 401 4 HOH HOH . M 4 HOH D 2 402 25 HOH HOH . M 4 HOH D 3 403 74 HOH HOH . M 4 HOH D 4 404 16 HOH HOH . M 4 HOH D 5 405 23 HOH HOH . M 4 HOH D 6 406 75 HOH HOH . M 4 HOH D 7 407 9 HOH HOH . M 4 HOH D 8 408 71 HOH HOH . M 4 HOH D 9 409 70 HOH HOH . M 4 HOH D 10 410 58 HOH HOH . M 4 HOH D 11 411 72 HOH HOH . M 4 HOH D 12 412 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 2 20.523 -31.632 -46.865 1 62.81 ? PA FAD 301 A 1 HETATM 2 O O1A FAD . . . E 2 20.449 -30.259 -46.295 1 61.29 ? O1A FAD 301 A 1 HETATM 3 O O2A FAD . . . E 2 21.808 -32.367 -46.783 1 64.25 ? O2A FAD 301 A 1 HETATM 4 O O5B FAD . . . E 2 20.07 -31.615 -48.402 1 75.92 ? O5B FAD 301 A 1 HETATM 5 C C5B FAD . . . E 2 20.31 -32.81 -49.249 1 74.1 ? C5B FAD 301 A 1 HETATM 6 C C4B FAD . . . E 2 20.792 -32.416 -50.636 1 74.29 ? C4B FAD 301 A 1 HETATM 7 O O4B FAD . . . E 2 19.76 -31.688 -51.353 1 70.14 ? O4B FAD 301 A 1 HETATM 8 C C3B FAD . . . E 2 22.032 -31.508 -50.666 1 74.99 ? C3B FAD 301 A 1 HETATM 9 O O3B FAD . . . E 2 22.918 -31.87 -51.716 1 62.19 ? O3B FAD 301 A 1 HETATM 10 C C2B FAD . . . E 2 21.398 -30.119 -50.833 1 74.35 ? C2B FAD 301 A 1 HETATM 11 O O2B FAD . . . E 2 22.342 -29.149 -51.23 1 64.49 ? O2B FAD 301 A 1 HETATM 12 C C1B FAD . . . E 2 20.295 -30.457 -51.84 1 71.31 ? C1B FAD 301 A 1 HETATM 13 N N9A FAD . . . E 2 19.22 -29.465 -52.012 1 68 ? N9A FAD 301 A 1 HETATM 14 C C8A FAD . . . E 2 18.866 -28.431 -51.18 1 67.06 ? C8A FAD 301 A 1 HETATM 15 N N7A FAD . . . E 2 17.883 -27.69 -51.637 1 67.05 ? N7A FAD 301 A 1 HETATM 16 C C5A FAD . . . E 2 17.578 -28.261 -52.865 1 69.36 ? C5A FAD 301 A 1 HETATM 17 C C6A FAD . . . E 2 16.624 -27.933 -53.851 1 68.85 ? C6A FAD 301 A 1 HETATM 18 N N6A FAD . . . E 2 15.783 -26.909 -53.761 1 71.7 ? N6A FAD 301 A 1 HETATM 19 N N1A FAD . . . E 2 16.58 -28.699 -54.964 1 64.66 ? N1A FAD 301 A 1 HETATM 20 C C2A FAD . . . E 2 17.436 -29.722 -55.064 1 68.73 ? C2A FAD 301 A 1 HETATM 21 N N3A FAD . . . E 2 18.365 -30.129 -54.205 1 69.17 ? N3A FAD 301 A 1 HETATM 22 C C4A FAD . . . E 2 18.393 -29.351 -53.108 1 67.49 ? C4A FAD 301 A 1 HETATM 23 N N1 FAD . . . E 2 18.6 -40.346 -40.236 1 54.55 ? N1 FAD 301 A 1 HETATM 24 C C2 FAD . . . E 2 17.934 -41.521 -40.07 1 58.63 ? C2 FAD 301 A 1 HETATM 25 O O2 FAD . . . E 2 17.591 -42.224 -41.027 1 63.1 ? O2 FAD 301 A 1 HETATM 26 N N3 FAD . . . E 2 17.608 -41.922 -38.782 1 60.7 ? N3 FAD 301 A 1 HETATM 27 C C4 FAD . . . E 2 17.962 -41.294 -37.615 1 57.09 ? C4 FAD 301 A 1 HETATM 28 O O4 FAD . . . E 2 17.604 -41.715 -36.535 1 71 ? O4 FAD 301 A 1 HETATM 29 C C4X FAD . . . E 2 18.642 -40.102 -37.797 1 55.44 ? C4X FAD 301 A 1 HETATM 30 N N5 FAD . . . E 2 18.999 -39.441 -36.721 1 55.87 ? N5 FAD 301 A 1 HETATM 31 C C5X FAD . . . E 2 19.636 -38.241 -36.888 1 54.32 ? C5X FAD 301 A 1 HETATM 32 C C6 FAD . . . E 2 19.98 -37.489 -35.744 1 52.84 ? C6 FAD 301 A 1 HETATM 33 C C7 FAD . . . E 2 20.56 -36.242 -35.851 1 55.13 ? C7 FAD 301 A 1 HETATM 34 C C7M FAD . . . E 2 20.907 -35.442 -34.62 1 52.37 ? C7M FAD 301 A 1 HETATM 35 C C8 FAD . . . E 2 20.835 -35.72 -37.139 1 58.7 ? C8 FAD 301 A 1 HETATM 36 C C8M FAD . . . E 2 21.493 -34.379 -37.3 1 60.89 ? C8M FAD 301 A 1 HETATM 37 C C9 FAD . . . E 2 20.547 -36.467 -38.262 1 57.18 ? C9 FAD 301 A 1 HETATM 38 C C9A FAD . . . E 2 19.918 -37.72 -38.171 1 55.37 ? C9A FAD 301 A 1 HETATM 39 N N10 FAD . . . E 2 19.58 -38.487 -39.29 1 55.16 ? N10 FAD 301 A 1 HETATM 40 C C10 FAD . . . E 2 18.922 -39.685 -39.148 1 56.35 ? C10 FAD 301 A 1 HETATM 41 C C1' FAD . . . E 2 19.819 -38.01 -40.666 1 56.55 ? C1' FAD 301 A 1 HETATM 42 C C2' FAD . . . E 2 18.75 -37.035 -41.148 1 56.1 ? C2' FAD 301 A 1 HETATM 43 O O2' FAD . . . E 2 17.468 -37.673 -41.23 1 49.83 ? O2' FAD 301 A 1 HETATM 44 C C3' FAD . . . E 2 19.188 -36.382 -42.471 1 56.82 ? C3' FAD 301 A 1 HETATM 45 O O3' FAD . . . E 2 20.35 -35.567 -42.293 1 53.55 ? O3' FAD 301 A 1 HETATM 46 C C4' FAD . . . E 2 18.127 -35.493 -43.12 1 56.91 ? C4' FAD 301 A 1 HETATM 47 O O4' FAD . . . E 2 16.931 -36.225 -43.393 1 54.6 ? O4' FAD 301 A 1 HETATM 48 C C5' FAD . . . E 2 18.657 -34.89 -44.405 1 54.57 ? C5' FAD 301 A 1 HETATM 49 O O5' FAD . . . E 2 17.767 -33.847 -44.811 1 54.17 ? O5' FAD 301 A 1 HETATM 50 P P FAD . . . E 2 18.318 -32.367 -44.947 1 59.21 ? P FAD 301 A 1 HETATM 51 O O1P FAD . . . E 2 17.164 -31.558 -45.404 1 56.17 ? O1P FAD 301 A 1 HETATM 52 O O2P FAD . . . E 2 19.053 -31.98 -43.714 1 60.94 ? O2P FAD 301 A 1 HETATM 53 O O3P FAD . . . E 2 19.376 -32.521 -46.156 1 68.93 ? O3P FAD 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #