data_8RGJ # _model_server_result.job_id frXbIUGFzJCY1JYkS-lZ6w _model_server_result.datetime_utc '2025-03-01 07:27:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rgj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 8RGJ # _exptl.entry_id 8RGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RGJ _cell.length_a 135.85 _cell.length_b 135.85 _cell.length_c 78.634 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ILE 217 B ILE 199 1_555 B N CSO 218 B CSO 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale2 B C CSO 218 B CSO 200 1_555 B N GLU 219 B GLU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 200 n n C1 C2 GOL sing 201 n n C1 H11 GOL sing 202 n n C1 H12 GOL sing 203 n n O1 HO1 GOL sing 204 n n C2 O2 GOL sing 205 n n C2 C3 GOL sing 206 n n C2 H2 GOL sing 207 n n O2 HO2 GOL sing 208 n n C3 O3 GOL sing 209 n n C3 H31 GOL sing 210 n n C3 H32 GOL sing 211 n n O3 HO3 GOL sing 212 n n # _atom_sites.entry_id 8RGJ _atom_sites.fract_transf_matrix[1][1] 0.007361 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007361 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012717 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ACP A 1 401 401 ACP ACP . D 4 ACT A 1 402 1 ACT ACT . E 5 GOL A 1 403 1 GOL GOL . F 3 ACP B 1 401 401 ACP ACP . G 6 HOH A 1 501 20 HOH HOH . G 6 HOH A 2 502 18 HOH HOH . G 6 HOH A 3 503 27 HOH HOH . G 6 HOH A 4 504 112 HOH HOH . G 6 HOH A 5 505 15 HOH HOH . G 6 HOH A 6 506 35 HOH HOH . G 6 HOH A 7 507 166 HOH HOH . G 6 HOH A 8 508 145 HOH HOH . G 6 HOH A 9 509 69 HOH HOH . G 6 HOH A 10 510 38 HOH HOH . G 6 HOH A 11 511 4 HOH HOH . G 6 HOH A 12 512 148 HOH HOH . G 6 HOH A 13 513 9 HOH HOH . G 6 HOH A 14 514 28 HOH HOH . G 6 HOH A 15 515 32 HOH HOH . G 6 HOH A 16 516 1 HOH HOH . G 6 HOH A 17 517 82 HOH HOH . G 6 HOH A 18 518 63 HOH HOH . G 6 HOH A 19 519 19 HOH HOH . G 6 HOH A 20 520 40 HOH HOH . G 6 HOH A 21 521 171 HOH HOH . G 6 HOH A 22 522 190 HOH HOH . G 6 HOH A 23 523 111 HOH HOH . G 6 HOH A 24 524 110 HOH HOH . G 6 HOH A 25 525 106 HOH HOH . G 6 HOH A 26 526 33 HOH HOH . G 6 HOH A 27 527 184 HOH HOH . G 6 HOH A 28 528 109 HOH HOH . G 6 HOH A 29 529 167 HOH HOH . G 6 HOH A 30 530 174 HOH HOH . G 6 HOH A 31 531 195 HOH HOH . G 6 HOH A 32 532 198 HOH HOH . G 6 HOH A 33 533 54 HOH HOH . G 6 HOH A 34 534 161 HOH HOH . G 6 HOH A 35 535 14 HOH HOH . G 6 HOH A 36 536 183 HOH HOH . G 6 HOH A 37 537 156 HOH HOH . G 6 HOH A 38 538 144 HOH HOH . G 6 HOH A 39 539 2 HOH HOH . G 6 HOH A 40 540 157 HOH HOH . G 6 HOH A 41 541 107 HOH HOH . G 6 HOH A 42 542 73 HOH HOH . G 6 HOH A 43 543 11 HOH HOH . G 6 HOH A 44 544 97 HOH HOH . G 6 HOH A 45 545 165 HOH HOH . G 6 HOH A 46 546 48 HOH HOH . G 6 HOH A 47 547 136 HOH HOH . G 6 HOH A 48 548 154 HOH HOH . G 6 HOH A 49 549 158 HOH HOH . G 6 HOH A 50 550 147 HOH HOH . G 6 HOH A 51 551 31 HOH HOH . G 6 HOH A 52 552 10 HOH HOH . G 6 HOH A 53 553 188 HOH HOH . G 6 HOH A 54 554 113 HOH HOH . G 6 HOH A 55 555 176 HOH HOH . G 6 HOH A 56 556 140 HOH HOH . G 6 HOH A 57 557 64 HOH HOH . G 6 HOH A 58 558 72 HOH HOH . G 6 HOH A 59 559 143 HOH HOH . G 6 HOH A 60 560 138 HOH HOH . G 6 HOH A 61 561 191 HOH HOH . G 6 HOH A 62 562 189 HOH HOH . G 6 HOH A 63 563 101 HOH HOH . G 6 HOH A 64 564 173 HOH HOH . G 6 HOH A 65 565 146 HOH HOH . G 6 HOH A 66 566 41 HOH HOH . G 6 HOH A 67 567 175 HOH HOH . G 6 HOH A 68 568 59 HOH HOH . G 6 HOH A 69 569 36 HOH HOH . G 6 HOH A 70 570 70 HOH HOH . G 6 HOH A 71 571 181 HOH HOH . H 6 HOH B 1 501 45 HOH HOH . H 6 HOH B 2 502 24 HOH HOH . H 6 HOH B 3 503 115 HOH HOH . H 6 HOH B 4 504 5 HOH HOH . H 6 HOH B 5 505 23 HOH HOH . H 6 HOH B 6 506 26 HOH HOH . H 6 HOH B 7 507 37 HOH HOH . H 6 HOH B 8 508 62 HOH HOH . H 6 HOH B 9 509 43 HOH HOH . H 6 HOH B 10 510 21 HOH HOH . H 6 HOH B 11 511 170 HOH HOH . H 6 HOH B 12 512 6 HOH HOH . H 6 HOH B 13 513 83 HOH HOH . H 6 HOH B 14 514 177 HOH HOH . H 6 HOH B 15 515 178 HOH HOH . H 6 HOH B 16 516 84 HOH HOH . H 6 HOH B 17 517 13 HOH HOH . H 6 HOH B 18 518 60 HOH HOH . H 6 HOH B 19 519 193 HOH HOH . H 6 HOH B 20 520 102 HOH HOH . H 6 HOH B 21 521 117 HOH HOH . H 6 HOH B 22 522 58 HOH HOH . H 6 HOH B 23 523 87 HOH HOH . H 6 HOH B 24 524 44 HOH HOH . H 6 HOH B 25 525 34 HOH HOH . H 6 HOH B 26 526 104 HOH HOH . H 6 HOH B 27 527 137 HOH HOH . H 6 HOH B 28 528 79 HOH HOH . H 6 HOH B 29 529 65 HOH HOH . H 6 HOH B 30 530 153 HOH HOH . H 6 HOH B 31 531 125 HOH HOH . H 6 HOH B 32 532 159 HOH HOH . H 6 HOH B 33 533 197 HOH HOH . H 6 HOH B 34 534 128 HOH HOH . H 6 HOH B 35 535 123 HOH HOH . H 6 HOH B 36 536 29 HOH HOH . H 6 HOH B 37 537 39 HOH HOH . H 6 HOH B 38 538 194 HOH HOH . H 6 HOH B 39 539 164 HOH HOH . H 6 HOH B 40 540 103 HOH HOH . H 6 HOH B 41 541 91 HOH HOH . H 6 HOH B 42 542 3 HOH HOH . H 6 HOH B 43 543 131 HOH HOH . H 6 HOH B 44 544 126 HOH HOH . H 6 HOH B 45 545 187 HOH HOH . H 6 HOH B 46 546 132 HOH HOH . H 6 HOH B 47 547 169 HOH HOH . H 6 HOH B 48 548 118 HOH HOH . H 6 HOH B 49 549 196 HOH HOH . H 6 HOH B 50 550 96 HOH HOH . H 6 HOH B 51 551 129 HOH HOH . H 6 HOH B 52 552 180 HOH HOH . H 6 HOH B 53 553 68 HOH HOH . H 6 HOH B 54 554 150 HOH HOH . H 6 HOH B 55 555 114 HOH HOH . H 6 HOH B 56 556 152 HOH HOH . H 6 HOH B 57 557 88 HOH HOH . H 6 HOH B 58 558 55 HOH HOH . H 6 HOH B 59 559 119 HOH HOH . H 6 HOH B 60 560 163 HOH HOH . H 6 HOH B 61 561 8 HOH HOH . H 6 HOH B 62 562 149 HOH HOH . H 6 HOH B 63 563 185 HOH HOH . H 6 HOH B 64 564 77 HOH HOH . H 6 HOH B 65 565 50 HOH HOH . H 6 HOH B 66 566 81 HOH HOH . H 6 HOH B 67 567 179 HOH HOH . H 6 HOH B 68 568 86 HOH HOH . H 6 HOH B 69 569 186 HOH HOH . H 6 HOH B 70 570 121 HOH HOH . H 6 HOH B 71 571 71 HOH HOH . H 6 HOH B 72 572 99 HOH HOH . H 6 HOH B 73 573 172 HOH HOH . H 6 HOH B 74 574 182 HOH HOH . H 6 HOH B 75 575 192 HOH HOH . H 6 HOH B 76 576 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 -50.622 -0.491 20.603 1 69.09 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . E 5 -49.241 -0.277 20.862 1 68.97 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . E 5 -50.833 -1.67 19.677 1 69.16 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . E 5 -50.011 -1.526 18.514 1 69.18 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . E 5 -50.547 -2.998 20.344 1 69.12 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . E 5 -51.458 -3.252 21.406 1 69.08 ? O3 GOL 403 A 1 HETATM 7 H H11 GOL . . . E 5 -51.011 0.424 20.148 1 69.09 ? H11 GOL 403 A 1 HETATM 8 H H12 GOL . . . E 5 -51.118 -0.647 21.565 1 69.09 ? H12 GOL 403 A 1 HETATM 9 H HO1 GOL . . . E 5 -49.158 0.545 21.373 1 68.97 ? HO1 GOL 403 A 1 HETATM 10 H H2 GOL . . . E 5 -51.861 -1.662 19.304 1 69.16 ? H2 GOL 403 A 1 HETATM 11 H HO2 GOL . . . E 5 -49.078 -1.524 18.789 1 69.18 ? HO2 GOL 403 A 1 HETATM 12 H H31 GOL . . . E 5 -49.539 -3.008 20.765 1 69.11 ? H31 GOL 403 A 1 HETATM 13 H H32 GOL . . . E 5 -50.642 -3.816 19.626 1 69.11 ? H32 GOL 403 A 1 HETATM 14 H HO3 GOL . . . E 5 -51.13 -4.024 21.898 1 69.08 ? HO3 GOL 403 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #