data_8RHG
#
_model_server_result.job_id            5qeqMWPRxN4xizHTdG1NAA 
_model_server_result.datetime_utc      '2024-11-07 23:35:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rhg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"BA","auth_seq_id":502}' 
#
_entry.id    8RHG 
#
_exptl.entry_id    8RHG 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RHG 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RHG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 M N N 
? 3 N N N 
? 3 R N N 
? 3 S N N 
? 3 W N N 
? 3 X N N 
? 3 AA N N 
? 3 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 198 A CYS 198 1_555 A SG CYS 212 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 198 B CYS 198 1_555 B SG CYS 212 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 C SG CYS 198 C CYS 198 1_555 C SG CYS 212 C CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 D SG CYS 198 D CYS 198 1_555 D SG CYS 212 D CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 E SG CYS 198 E CYS 198 1_555 E SG CYS 212 E CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 B ND2 ASN 234 B ASN 234 1_555 N C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale2 D ND2 ASN 234 D ASN 234 1_555 X C1 NAG . D NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? 
covale ? covale3 E ND2 ASN 234 E ASN 234 1_555 BA C1 NAG . E NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 331 n n 
C1 O1 NAG sing 332 n n 
C1 O5 NAG sing 333 n n 
C1 H1 NAG sing 334 n n 
C2 C3 NAG sing 335 n n 
C2 N2 NAG sing 336 n n 
C2 H2 NAG sing 337 n n 
C3 C4 NAG sing 338 n n 
C3 O3 NAG sing 339 n n 
C3 H3 NAG sing 340 n n 
C4 C5 NAG sing 341 n n 
C4 O4 NAG sing 342 n n 
C4 H4 NAG sing 343 n n 
C5 C6 NAG sing 344 n n 
C5 O5 NAG sing 345 n n 
C5 H5 NAG sing 346 n n 
C6 O6 NAG sing 347 n n 
C6 H61 NAG sing 348 n n 
C6 H62 NAG sing 349 n n 
C7 C8 NAG sing 350 n n 
C7 N2 NAG sing 351 n n 
C7 O7 NAG doub 352 n n 
C8 H81 NAG sing 353 n n 
C8 H82 NAG sing 354 n n 
C8 H83 NAG sing 355 n n 
N2 HN2 NAG sing 356 n n 
O1 HO1 NAG sing 357 n n 
O3 HO3 NAG sing 358 n n 
O4 HO4 NAG sing 359 n n 
O6 HO6 NAG sing 360 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8RHG 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 ABU A 1 601 601 ABU ABU . 
G 3 NAG A 1 602 602 NAG NAG . 
H 3 NAG A 1 603 603 NAG NAG . 
I 4 OCT A 1 604 702 OCT OCT . 
J 2 ABU A 1 605 601 ABU ABU . 
K 5 A8W A 1 606 601 A8W A8W . 
L 2 ABU B 1 601 601 ABU ABU . 
M 3 NAG B 1 602 602 NAG NAG . 
N 3 NAG B 1 603 603 NAG NAG . 
O 4 OCT B 1 604 702 OCT OCT . 
P 6 HEX B 1 605 705 HEX HEX . 
Q 2 ABU C 1 601 601 ABU ABU . 
R 3 NAG C 1 602 602 NAG NAG . 
S 3 NAG C 1 603 603 NAG NAG . 
T 4 OCT C 1 604 702 OCT OCT . 
U 6 HEX C 1 605 705 HEX HEX . 
V 2 ABU D 1 601 601 ABU ABU . 
W 3 NAG D 1 602 602 NAG NAG . 
X 3 NAG D 1 603 603 NAG NAG . 
Y 4 OCT D 1 604 702 OCT OCT . 
Z 6 HEX D 1 605 705 HEX HEX . 
AA 3 NAG E 1 501 602 NAG NAG . 
BA 3 NAG E 1 502 603 NAG NAG . 
CA 4 OCT E 1 503 702 OCT OCT . 
DA 6 HEX E 1 504 705 HEX HEX . 
EA 7 CL E 1 505 602 CL CL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . BA 3 102.916 127.163 106.032 1 64.2 ? C1 NAG 502 E 1 
HETATM 2 C C2 NAG . . . BA 3 102.128 127.992 107.041 1 64.2 ? C2 NAG 502 E 1 
HETATM 3 C C3 NAG . . . BA 3 100.649 127.626 106.983 1 64.2 ? C3 NAG 502 E 1 
HETATM 4 C C4 NAG . . . BA 3 100.129 127.747 105.556 1 64.2 ? C4 NAG 502 E 1 
HETATM 5 C C5 NAG . . . BA 3 101 126.932 104.605 1 64.2 ? C5 NAG 502 E 1 
HETATM 6 C C6 NAG . . . BA 3 100.616 127.103 103.155 1 64.2 ? C6 NAG 502 E 1 
HETATM 7 C C7 NAG . . . BA 3 103.29 128.765 109.061 1 64.2 ? C7 NAG 502 E 1 
HETATM 8 C C8 NAG . . . BA 3 103.761 128.399 110.436 1 64.2 ? C8 NAG 502 E 1 
HETATM 9 N N2 NAG . . . BA 3 102.649 127.804 108.386 1 64.2 ? N2 NAG 502 E 1 
HETATM 10 O O3 NAG . . . BA 3 99.913 128.486 107.844 1 64.2 ? O3 NAG 502 E 1 
HETATM 11 O O4 NAG . . . BA 3 98.788 127.278 105.482 1 64.2 ? O4 NAG 502 E 1 
HETATM 12 O O5 NAG . . . BA 3 102.369 127.349 104.723 1 64.2 ? O5 NAG 502 E 1 
HETATM 13 O O6 NAG . . . BA 3 101.222 128.257 102.59 1 64.2 ? O6 NAG 502 E 1 
HETATM 14 O O7 NAG . . . BA 3 103.481 129.878 108.583 1 64.2 ? O7 NAG 502 E 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           14 
#