data_8RHG # _model_server_result.job_id YEp6RDlyrLQnXz_1K-Kgmg _model_server_result.datetime_utc '2024-11-07 23:51:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rhg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":604}' # _entry.id 8RHG # _exptl.entry_id 8RHG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 114.229 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OCTANE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RHG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RHG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 O N N ? 4 T N N ? 4 Y N N ? 4 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 198 A CYS 198 1_555 A SG CYS 212 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 198 B CYS 198 1_555 B SG CYS 212 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 198 C CYS 198 1_555 C SG CYS 212 C CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 D SG CYS 198 D CYS 198 1_555 D SG CYS 212 D CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 E SG CYS 198 E CYS 198 1_555 E SG CYS 212 E CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 B ND2 ASN 234 B ASN 234 1_555 N C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 D ND2 ASN 234 D ASN 234 1_555 X C1 NAG . D NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? covale ? covale3 E ND2 ASN 234 E ASN 234 1_555 BA C1 NAG . E NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? # _chem_comp.formula 'C8 H18' _chem_comp.formula_weight 114.229 _chem_comp.id OCT _chem_comp.mon_nstd_flag . _chem_comp.name N-OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCT sing 361 n n C1 H11 OCT sing 362 n n C1 H12 OCT sing 363 n n C1 H13 OCT sing 364 n n C2 C3 OCT sing 365 n n C2 H21 OCT sing 366 n n C2 H22 OCT sing 367 n n C3 C4 OCT sing 368 n n C3 H31 OCT sing 369 n n C3 H32 OCT sing 370 n n C4 C5 OCT sing 371 n n C4 H41 OCT sing 372 n n C4 H42 OCT sing 373 n n C5 C6 OCT sing 374 n n C5 H51 OCT sing 375 n n C5 H52 OCT sing 376 n n C6 C7 OCT sing 377 n n C6 H61 OCT sing 378 n n C6 H62 OCT sing 379 n n C7 C8 OCT sing 380 n n C7 H71 OCT sing 381 n n C7 H72 OCT sing 382 n n C8 H81 OCT sing 383 n n C8 H82 OCT sing 384 n n C8 H83 OCT sing 385 n n # _atom_sites.entry_id 8RHG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ABU A 1 601 601 ABU ABU . G 3 NAG A 1 602 602 NAG NAG . H 3 NAG A 1 603 603 NAG NAG . I 4 OCT A 1 604 702 OCT OCT . J 2 ABU A 1 605 601 ABU ABU . K 5 A8W A 1 606 601 A8W A8W . L 2 ABU B 1 601 601 ABU ABU . M 3 NAG B 1 602 602 NAG NAG . N 3 NAG B 1 603 603 NAG NAG . O 4 OCT B 1 604 702 OCT OCT . P 6 HEX B 1 605 705 HEX HEX . Q 2 ABU C 1 601 601 ABU ABU . R 3 NAG C 1 602 602 NAG NAG . S 3 NAG C 1 603 603 NAG NAG . T 4 OCT C 1 604 702 OCT OCT . U 6 HEX C 1 605 705 HEX HEX . V 2 ABU D 1 601 601 ABU ABU . W 3 NAG D 1 602 602 NAG NAG . X 3 NAG D 1 603 603 NAG NAG . Y 4 OCT D 1 604 702 OCT OCT . Z 6 HEX D 1 605 705 HEX HEX . AA 3 NAG E 1 501 602 NAG NAG . BA 3 NAG E 1 502 603 NAG NAG . CA 4 OCT E 1 503 702 OCT OCT . DA 6 HEX E 1 504 705 HEX HEX . EA 7 CL E 1 505 602 CL CL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCT . . . Y 4 146.645 110.503 138.829 1 95.15 ? C1 OCT 604 D 1 HETATM 2 C C2 OCT . . . Y 4 147.557 110.746 140.03 1 95.15 ? C2 OCT 604 D 1 HETATM 3 C C3 OCT . . . Y 4 146.804 111.545 141.091 1 95.15 ? C3 OCT 604 D 1 HETATM 4 C C4 OCT . . . Y 4 147.651 111.626 142.358 1 95.15 ? C4 OCT 604 D 1 HETATM 5 C C5 OCT . . . Y 4 146.868 112.348 143.453 1 95.15 ? C5 OCT 604 D 1 HETATM 6 C C6 OCT . . . Y 4 146.836 113.845 143.155 1 95.15 ? C6 OCT 604 D 1 HETATM 7 C C7 OCT . . . Y 4 146.174 114.58 144.318 1 95.15 ? C7 OCT 604 D 1 HETATM 8 C C8 OCT . . . Y 4 146.305 116.086 144.107 1 95.15 ? C8 OCT 604 D 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 8 #