data_8RHH # _model_server_result.job_id hczhtMMnV9ZGlsouVY9lOA _model_server_result.datetime_utc '2024-11-21 09:31:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rhh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1001}' # _entry.id 8RHH # _exptl.entry_id 8RHH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RHH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RHH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG1 THR 92 K THR 92 1_555 J MG MG . K MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc2 B OG SER 202 K SER 202 1_555 J MG MG . K MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc3 I O3G ANP . K ANP 1001 1_555 J MG MG . K MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc4 I O2B ANP . K ANP 1001 1_555 J MG MG . K MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc5 K MG MG . L MG 1001 1_555 L O2G ANP . L ANP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc6 K MG MG . L MG 1001 1_555 L O1B ANP . L ANP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc7 D OE1 GLU 71 A GLU 71 1_555 N MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc8 D OE2 GLU 71 A GLU 71 1_555 N MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc9 M O3G GTP . A GTP 501 1_555 N MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc10 M O1B GTP . A GTP 501 1_555 N MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8RHH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 GDP B 1 501 501 GDP GDP . H 5 TA1 B 1 502 502 TA1 TA1 . I 6 ANP K 1 1001 602 ANP ANP . J 7 MG K 1 1002 502 MG MG . K 7 MG L 1 1001 501 MG MG . L 6 ANP L 1 1002 500 ANP ANP . M 8 GTP A 1 501 501 GTP GTP . N 7 MG A 1 502 502 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . I 6 130.498 146.884 98.511 1 57.5 ? PG ANP 1001 K 1 HETATM 2 O O1G ANP . . . I 6 131.955 146.843 98.828 1 64.68 ? O1G ANP 1001 K 1 HETATM 3 O O2G ANP . . . I 6 130.135 148.251 97.842 1 48.62 ? O2G ANP 1001 K 1 HETATM 4 O O3G ANP . . . I 6 129.644 146.662 99.808 1 67.31 ? O3G ANP 1001 K 1 HETATM 5 P PB ANP . . . I 6 130.293 144.141 97.96 1 58.89 ? PB ANP 1001 K 1 HETATM 6 O O1B ANP . . . I 6 131.722 143.742 97.94 1 58.11 ? O1B ANP 1001 K 1 HETATM 7 O O2B ANP . . . I 6 129.637 143.84 99.344 1 63.55 ? O2B ANP 1001 K 1 HETATM 8 N N3B ANP . . . I 6 130.074 145.701 97.412 1 54.6 ? N3B ANP 1001 K 1 HETATM 9 P PA ANP . . . I 6 128.931 142.081 96.901 1 70.06 ? PA ANP 1001 K 1 HETATM 10 O O1A ANP . . . I 6 127.732 142.019 97.769 1 58.81 ? O1A ANP 1001 K 1 HETATM 11 O O2A ANP . . . I 6 129.771 140.84 96.58 1 68.37 ? O2A ANP 1001 K 1 HETATM 12 O O3A ANP . . . I 6 129.607 143.433 96.796 1 57.65 ? O3A ANP 1001 K 1 HETATM 13 O O5' ANP . . . I 6 128.339 142.34 95.504 1 60.77 ? O5' ANP 1001 K 1 HETATM 14 C C5' ANP . . . I 6 127.413 141.382 95.489 1 58.08 ? C5' ANP 1001 K 1 HETATM 15 C C4' ANP . . . I 6 126.814 140.916 94.227 1 47.72 ? C4' ANP 1001 K 1 HETATM 16 O O4' ANP . . . I 6 127.84 140.291 93.421 1 44.12 ? O4' ANP 1001 K 1 HETATM 17 C C3' ANP . . . I 6 125.903 139.819 94.758 1 51.3 ? C3' ANP 1001 K 1 HETATM 18 O O3' ANP . . . I 6 124.519 139.868 94.446 1 55.17 ? O3' ANP 1001 K 1 HETATM 19 C C2' ANP . . . I 6 126.643 138.52 94.455 1 55.44 ? C2' ANP 1001 K 1 HETATM 20 O O2' ANP . . . I 6 125.783 137.469 94.044 1 63.5 ? O2' ANP 1001 K 1 HETATM 21 C C1' ANP . . . I 6 127.64 138.89 93.361 1 54.67 ? C1' ANP 1001 K 1 HETATM 22 N N9 ANP . . . I 6 128.867 138.147 93.624 1 51.23 ? N9 ANP 1001 K 1 HETATM 23 C C8 ANP . . . I 6 129.946 138.509 94.386 1 54.57 ? C8 ANP 1001 K 1 HETATM 24 N N7 ANP . . . I 6 130.846 137.563 94.517 1 55.67 ? N7 ANP 1001 K 1 HETATM 25 C C5 ANP . . . I 6 130.295 136.486 93.836 1 50.88 ? C5 ANP 1001 K 1 HETATM 26 C C6 ANP . . . I 6 130.757 135.173 93.603 1 56.07 ? C6 ANP 1001 K 1 HETATM 27 N N6 ANP . . . I 6 131.922 134.706 94.058 1 60.45 ? N6 ANP 1001 K 1 HETATM 28 N N1 ANP . . . I 6 129.963 134.343 92.884 1 55.32 ? N1 ANP 1001 K 1 HETATM 29 C C2 ANP . . . I 6 128.794 134.805 92.431 1 56.19 ? C2 ANP 1001 K 1 HETATM 30 N N3 ANP . . . I 6 128.261 136.021 92.59 1 56.2 ? N3 ANP 1001 K 1 HETATM 31 C C4 ANP . . . I 6 129.065 136.821 93.305 1 49.21 ? C4 ANP 1001 K 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #