data_8RHH # _model_server_result.job_id p-a14NSCYzOtfQVTU9kGXg _model_server_result.datetime_utc '2024-11-21 10:12:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rhh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1002}' # _entry.id 8RHH # _exptl.entry_id 8RHH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RHH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RHH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG1 THR 92 K THR 92 1_555 J MG MG . K MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc2 B OG SER 202 K SER 202 1_555 J MG MG . K MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc3 I O3G ANP . K ANP 1001 1_555 J MG MG . K MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc4 I O2B ANP . K ANP 1001 1_555 J MG MG . K MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc5 K MG MG . L MG 1001 1_555 L O2G ANP . L ANP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc6 K MG MG . L MG 1001 1_555 L O1B ANP . L ANP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc7 D OE1 GLU 71 A GLU 71 1_555 N MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc8 D OE2 GLU 71 A GLU 71 1_555 N MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc9 M O3G GTP . A GTP 501 1_555 N MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc10 M O1B GTP . A GTP 501 1_555 N MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8RHH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 GDP B 1 501 501 GDP GDP . H 5 TA1 B 1 502 502 TA1 TA1 . I 6 ANP K 1 1001 602 ANP ANP . J 7 MG K 1 1002 502 MG MG . K 7 MG L 1 1001 501 MG MG . L 6 ANP L 1 1002 500 ANP ANP . M 8 GTP A 1 501 501 GTP GTP . N 7 MG A 1 502 502 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . L 6 112.856 102.563 148.565 1 105.19 ? PG ANP 1002 L 1 HETATM 2 O O1G ANP . . . L 6 112.532 101.276 147.879 1 106.42 ? O1G ANP 1002 L 1 HETATM 3 O O2G ANP . . . L 6 113.625 103.493 147.584 1 99.88 ? O2G ANP 1002 L 1 HETATM 4 O O3G ANP . . . L 6 113.784 102.249 149.796 1 106.9 ? O3G ANP 1002 L 1 HETATM 5 P PB ANP . . . L 6 111.141 104.878 149.298 1 105.47 ? PB ANP 1002 L 1 HETATM 6 O O1B ANP . . . L 6 111.752 105.88 148.398 1 100.3 ? O1B ANP 1002 L 1 HETATM 7 O O2B ANP . . . L 6 110.866 105.204 150.775 1 108.76 ? O2B ANP 1002 L 1 HETATM 8 N N3B ANP . . . L 6 111.379 103.27 148.951 1 101.95 ? N3B ANP 1002 L 1 HETATM 9 P PA ANP . . . L 6 109.082 105.932 147.746 1 110.65 ? PA ANP 1002 L 1 HETATM 10 O O1A ANP . . . L 6 108.995 105.36 146.39 1 104.63 ? O1A ANP 1002 L 1 HETATM 11 O O2A ANP . . . L 6 109.024 107.415 148.087 1 102.33 ? O2A ANP 1002 L 1 HETATM 12 O O3A ANP . . . L 6 109.677 104.992 148.87 1 107.39 ? O3A ANP 1002 L 1 HETATM 13 O O5' ANP . . . L 6 107.6 105.738 147.988 1 106.83 ? O5' ANP 1002 L 1 HETATM 14 C C5' ANP . . . L 6 106.929 104.891 148.891 1 105.68 ? C5' ANP 1002 L 1 HETATM 15 C C4' ANP . . . L 6 105.565 104.709 148.254 1 104 ? C4' ANP 1002 L 1 HETATM 16 O O4' ANP . . . L 6 104.57 105.436 149.008 1 106.77 ? O4' ANP 1002 L 1 HETATM 17 C C3' ANP . . . L 6 105.417 105.232 146.827 1 103.56 ? C3' ANP 1002 L 1 HETATM 18 O O3' ANP . . . L 6 104.403 104.506 146.139 1 102.7 ? O3' ANP 1002 L 1 HETATM 19 C C2' ANP . . . L 6 105.039 106.702 147.054 1 104.13 ? C2' ANP 1002 L 1 HETATM 20 O O2' ANP . . . L 6 104.343 107.272 145.95 1 103.48 ? O2' ANP 1002 L 1 HETATM 21 C C1' ANP . . . L 6 104.172 106.61 148.315 1 106.4 ? C1' ANP 1002 L 1 HETATM 22 N N9 ANP . . . L 6 104.287 107.756 149.226 1 106.94 ? N9 ANP 1002 L 1 HETATM 23 C C8 ANP . . . L 6 105.322 108.038 150.078 1 105.7 ? C8 ANP 1002 L 1 HETATM 24 N N7 ANP . . . L 6 105.15 109.129 150.788 1 106.01 ? N7 ANP 1002 L 1 HETATM 25 C C5 ANP . . . L 6 103.912 109.597 150.376 1 103.85 ? C5 ANP 1002 L 1 HETATM 26 C C6 ANP . . . L 6 103.149 110.721 150.751 1 103.28 ? C6 ANP 1002 L 1 HETATM 27 N N6 ANP . . . L 6 103.539 111.616 151.662 1 103.89 ? N6 ANP 1002 L 1 HETATM 28 N N1 ANP . . . L 6 101.952 110.896 150.144 1 105.18 ? N1 ANP 1002 L 1 HETATM 29 C C2 ANP . . . L 6 101.554 110.003 149.231 1 105.29 ? C2 ANP 1002 L 1 HETATM 30 N N3 ANP . . . L 6 102.186 108.909 148.8 1 104.06 ? N3 ANP 1002 L 1 HETATM 31 C C4 ANP . . . L 6 103.366 108.76 149.416 1 104.7 ? C4 ANP 1002 L 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 63 _model_server_stats.query_time_ms 1161 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #